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8UT8
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BU of 8ut8 by Molmil
CryoEM structure of A/Shanghai/1/2013 H7 in complex with polyclonal Fab from mice immunized with H7 stem nanoparticles-15 days post-immunization
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Huang, J, Han, J, Ward, A.B.
Deposit date:2023-10-30
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses.
Immunity, 57, 2024
3J9O
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BU of 3j9o by Molmil
CryoEM structure of a type VI secretion system
Descriptor: Intracellular growth locus protein A, Intracellular growth locus protein B
Authors:Clemens, D.L, Ge, P, Lee, B.-Y, Horwitz, M.A, Zhou, Z.H.
Deposit date:2015-02-11
Release date:2015-03-18
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Atomic Structure of T6SS Reveals Interlaced Array Essential to Function.
Cell(Cambridge,Mass.), 160, 2015
3JV5
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BU of 3jv5 by Molmil
Crystal structure of the dimerization domains p52 homodimer
Descriptor: Nuclear factor NF-kappa-B p100 subunit
Authors:Vu, D, Huang, D.B, Ghosh, G.
Deposit date:2009-09-15
Release date:2010-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Instability of the RelB dimerization domain is functionally important
To be Published
6N1O
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BU of 6n1o by Molmil
Oxidized rat cytochrome c mutant (S47E)
Descriptor: 1,2-ETHANEDIOL, Cytochrome c, somatic, ...
Authors:Huttemann, M, Edwards, B.F.P.
Deposit date:2018-11-09
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Serine-47 phosphorylation of cytochromecin the mammalian brain regulates cytochromecoxidase and caspase-3 activity.
Faseb J., 33, 2019
5TJN
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BU of 5tjn by Molmil
Crystal structure of GTB + B trisaccharide (native)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Histo-blood group ABO system transferase, alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]octyl beta-D-galactopyranoside
Authors:Legg, M.S.G, Gagnon, S.M.L, Evans, S.V.
Deposit date:2016-10-04
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:High-resolution crystal structures and STD NMR mapping of human ABO(H) blood group glycosyltransferases in complex with trisaccharide reaction products suggest a molecular basis for product release.
Glycobiology, 27, 2017
2IBM
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BU of 2ibm by Molmil
A novel dimer interface and conformational changes revealed by an X-ray structure of B. subtilis SecA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Preprotein translocase secA subunit
Authors:Zimmer, J, Li, W, Rapoport, T.A.
Deposit date:2006-09-11
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A Novel Dimer Interface and Conformational Changes Revealed by an X-ray Structure of B. subtilis SecA.
J.Mol.Biol., 364, 2006
6CBO
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BU of 6cbo by Molmil
X-ray structure of GenB1 from micromonospora echinospora in complex with neamine and PLP (as the external aldimine)
Descriptor: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2-amino-2,6-dideoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-glucopyranoside, 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ...
Authors:Dow, G.T, Thoden, J.B, Holden, H.M.
Deposit date:2018-02-03
Release date:2018-02-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin.
Protein Sci., 27, 2018
1VMH
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BU of 1vmh by Molmil
Crystal structure of an uncharacterized conserved protein yjbq/upf0047 family, ortholog yugu b.subtilis (ca_c0907) from clostridium acetobutylicum at 1.31 A resolution
Descriptor: SODIUM ION, Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2004-09-24
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Crystal structure of Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (15023806) from Clostridium acetobutylicum at 1.31 A resolution
To be published
4NHH
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BU of 4nhh by Molmil
Structure of 2G12 IgG Dimer
Descriptor: 2G12 IgG dimer heavy chain, 2G12 IgG dimer light chain, Hepatitis B virus receptor binding protein
Authors:Wu, Y, West Jr, A.P, Kim, H.J, Thornton, M.E, Ward, A.B, Bjorkman, P.J.
Deposit date:2013-11-05
Release date:2014-02-26
Method:X-RAY DIFFRACTION (6.5 Å)
Cite:Structural basis for enhanced HIV-1 neutralization by a dimeric immunoglobulin G form of the glycan-recognizing antibody 2G12.
Cell Rep, 5, 2013
1KAZ
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BU of 1kaz by Molmil
70KD HEAT SHOCK COGNATE PROTEIN ATPASE DOMAIN, K71E MUTANT
Descriptor: 70KD HEAT SHOCK COGNATE PROTEIN, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
Authors:O'Brien, M.C, Flaherty, K.M, Mckay, D.B.
Deposit date:1996-04-15
Release date:1996-11-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Lysine 71 of the chaperone protein Hsc70 Is essential for ATP hydrolysis.
J.Biol.Chem., 271, 1996
6Z1H
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BU of 6z1h by Molmil
Ancestral glycosidase (family 1)
Descriptor: ANCESTRAL RECONSTRUCTED GLYCOSIDASE, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Gavira, J.A, Risso, V.A, Sanchez-Ruiz, J.M, Gamiz-Arco, G, Gutierrez-Rus, L, Ibarra-Molero, B, Hoshino, Y, Petrovic, D, Romero-Rivera, A, Seelig, B, Kamerlin, S.C.L, Gaucher, E.A.
Deposit date:2020-05-13
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Heme-binding enables allosteric modulation in an ancient TIM-barrel glycosidase.
Nat Commun, 12, 2021
1KAX
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BU of 1kax by Molmil
70KD HEAT SHOCK COGNATE PROTEIN ATPASE DOMAIN, K71M MUTANT
Descriptor: 70KD HEAT SHOCK COGNATE PROTEIN, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
Authors:O'Brien, M.C, Flaherty, K.M, Mckay, D.B.
Deposit date:1996-04-15
Release date:1996-11-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Lysine 71 of the chaperone protein Hsc70 Is essential for ATP hydrolysis.
J.Biol.Chem., 271, 1996
2FCI
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BU of 2fci by Molmil
Structural basis for the requirement of two phosphotyrosines in signaling mediated by Syk tyrosine kinase
Descriptor: C-termainl SH2 domain from phospholipase C-gamma-1 comprising residues 663-759, Doubly phosphorylated peptide derived from Syk kinase comprising residues 338-350
Authors:Groesch, T.D, Zhou, F, Mattila, S, Geahlen, R.L, Post, C.B.
Deposit date:2005-12-12
Release date:2006-01-31
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structural basis for the requirement of two phosphotyrosine residues in signaling mediated by syk tyrosine kinase
J.Mol.Biol., 356, 2006
1VRF
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BU of 1vrf by Molmil
SOLUTION STRUCTURE OF COMPONENT IV GLYCERA DIBRANCHIATA MONOMERIC HEMOGLOBIN-CO
Descriptor: CARBON MONOXIDE, PROTEIN (GLOBIN, MONOMERIC COMPONENT M-IV), ...
Authors:Volkman, B.F, Alam, S.L, Satterlee, J.D, Markley, J.L.
Deposit date:1999-03-25
Release date:1999-04-01
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO.
Biochemistry, 37, 1998
6C9O
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BU of 6c9o by Molmil
Selenomethionine mutant (V29Sem) of protein GB1 examined by X-ray diffraction
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Immunoglobulin G-binding protein G
Authors:Chen, Q.
Deposit date:2018-01-28
Release date:2019-07-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:77Se NMR Probes the Protein Environment of Selenomethionine.
J.Phys.Chem.B, 2020
1KIP
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BU of 1kip by Molmil
FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor: LYSOZYME, MONOCLONAL ANTIBODY D1.3
Authors:Fields, B.A, Poljak, R.J, Mariuzza, R.A.
Deposit date:1996-10-23
Release date:1996-12-23
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme.
Biochemistry, 35, 1996
7RSO
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BU of 7rso by Molmil
AMC016 SOSIP.v4.2 in complex with PGV04 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, AMC016 gp120, ...
Authors:Bader, D.L.V, Cottrell, C.A, Ward, A.B.
Deposit date:2021-08-11
Release date:2021-09-15
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization.
J.Virol., 96, 2022
1KIQ
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BU of 1kiq by Molmil
FV MUTANT Y(B 101)F (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor: LYSOZYME, MONOCLONAL ANTIBODY D1.3
Authors:Fields, B.A, Poljak, R.J, Mariuzza, R.A.
Deposit date:1996-10-23
Release date:1996-12-23
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme.
Biochemistry, 35, 1996
7RSN
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BU of 7rsn by Molmil
AMC018 SOSIP.v4.2 in complex with PGV04 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, AMC018 gp120, ...
Authors:Cottrell, C.A, Ward, A.B.
Deposit date:2021-08-11
Release date:2021-09-15
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization.
J.Virol., 96, 2022
6IZ5
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BU of 6iz5 by Molmil
Crystal Structure Analysis of a Eukaryotic Membrane Protein
Descriptor: Trimeric intracellular cation channel type B-B
Authors:Li, D, Su, M, Hendrickson, W.A, Chen, Y.H.
Deposit date:2018-12-18
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.701 Å)
Cite:Structural basis for activity of TRIC counter-ion channels in calcium release.
Proc.Natl.Acad.Sci.USA, 116, 2019
6G6W
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BU of 6g6w by Molmil
HUMAN PI3KDELTA IN COMPLEX WITH LIGAND LASW1976
Descriptor: Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform, ~{N}-[3-[4-[[(1~{S})-1-(5-methyl-4-oxidanylidene-3-phenyl-pyrrolo[2,1-f][1,2,4]triazin-2-yl)ethyl]amino]-7~{H}-pyrrolo[ 2,3-d]pyrimidin-5-yl]-5-oxidanyl-phenyl]methanesulfonamide
Authors:Segarra, V, Hernandez, B, Jestel, A, Mortel, M, Nagel, S.
Deposit date:2018-04-03
Release date:2018-11-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Discovery of a Novel Inhaled PI3K delta Inhibitor for the Treatment of Respiratory Diseases.
J. Med. Chem., 61, 2018
6IZ6
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BU of 6iz6 by Molmil
Crystal Structure Analysis of TRIC counter-ion channels in calcium release
Descriptor: CALCIUM ION, Trimeric intracellular cation channel type B-B
Authors:Liu, X.L, Wang, X.H, Su, M, Hendrickson, W.A, Chen, Y.H.
Deposit date:2018-12-18
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.293 Å)
Cite:Structural basis for activity of TRIC counter-ion channels in calcium release.
Proc.Natl.Acad.Sci.USA, 116, 2019
3PBY
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BU of 3pby by Molmil
Crystal structure of the mutant L123S of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-monophosphate decarboxylase
Authors:Fedorov, A.A, Fedorov, E.V, Iiams, V, Wood, B.M, Gerlt, J.A, Almo, S.C.
Deposit date:2010-10-21
Release date:2011-09-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: importance of residues in the orotate binding site.
Biochemistry, 50, 2011
2CBN
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BU of 2cbn by Molmil
Crystal structure of ZipD from Escherichia coli
Descriptor: RIBONUCLEASE Z, ZINC ION
Authors:Pohl, E, Meyer-Klaucke, W, Kostelecky, B.
Deposit date:2006-01-06
Release date:2006-02-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Crystal Structure of the Zinc Phosphodiesterase from Escherichia Coli Provides Insight Into Function and Cooperativity of Trnase Z-Family Proteins.
J.Bacteriol., 188, 2006
3PBW
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BU of 3pbw by Molmil
Crystal structure of the mutant L123N of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, Orotidine 5'-monophosphate decarboxylase
Authors:Fedorov, A.A, Fedorov, E.V, Iiams, V, Wood, B.M, Gerlt, J.A, Almo, S.C.
Deposit date:2010-10-21
Release date:2011-09-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: importance of residues in the orotate binding site.
Biochemistry, 50, 2011

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