PDB: 11109 resultsInfo pagesStatus searchChemie searchBIRD

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3KO9	DTD from Plasmodium falciparum in complex with D-Arginine Descriptor: D-ARGININE, D-tyrosyl-tRNA(Tyr) deacylase Authors: Manickam, Y, Bhatt, T.K, Sharma, A. Deposit date: 2009-11-13 Release date: 2009-12-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase J.Biol.Chem., 285, 2010
7Z0E	Crystal structure of the M state of bacteriorhodopsin at 1.22 Angstrom resolution Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, ... Authors: Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. Deposit date: 2022-02-22 Release date: 2022-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.22 Å) Cite: True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
4MXV	Structure of Lymphotoxin alpha bound to anti-LTa Fab Descriptor: Lymphotoxin-alpha, anti-Lymphotoxin alpha antibody heavy chain, anti-Lymphotoxin alpha antibody light chain Authors: Yin, J.P, Hymowitz, S.G. Deposit date: 2013-09-26 Release date: 2013-11-13 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dimerization of LT beta R by LT alpha 1 beta 2 is necessary and sufficient for signal transduction. Proc.Natl.Acad.Sci.USA, 110, 2013
3KO5	D-Tyr-tRNA(Tyr) deacylase from Plasmodium falciparum in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-tyrosyl-tRNA(Tyr) deacylase Authors: Manickam, Y, Bhatt, T.K, Sharma, A. Deposit date: 2009-11-13 Release date: 2009-12-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase J.Biol.Chem., 285, 2010
7ZB9	Crystal structure of CYP124 in complex with inhibitor carbethoxyhexyl imidazole in the absence of glycerol (NoCryo) Descriptor: CHLORIDE ION, CYP124 in complex with inhibitor carbethoxyhexyl imidazole, MAGNESIUM ION, ... Authors: Bukhdruker, S, Varaksa, T, Marin, E, Gilep, A, Strushkevich, N, Borshchevskiy, V. Deposit date: 2022-03-23 Release date: 2023-01-11 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Structural insights into the effects of glycerol on ligand binding to cytochrome P450. Acta Crystallogr D Struct Biol, 79, 2023
3X1D	Crystal Structure of Atlastin from Drosophila melanogaster Descriptor: Atlastin, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Liu, X. Deposit date: 2014-11-14 Release date: 2015-10-28 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.87 Å) Cite: Comparison of human and Drosophila atlastin GTPases Protein Cell, 6, 2015
4O6D	West Nile Virus Non-structural protein 1 (NS1) Form 1 crystal Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NS1, ... Authors: Akey, D.L, Smith, J.L. Deposit date: 2013-12-20 Release date: 2014-02-19 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.5936 Å) Cite: Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system. Science, 343, 2014
4OGE	Crystal structure of the Type II-C Cas9 enzyme from Actinomyces naeslundii Descriptor: HNH endonuclease domain protein, MAGNESIUM ION, SPERMIDINE, ... Authors: Jiang, F, Ma, E, Lin, S, Doudna, J.A. Deposit date: 2014-01-15 Release date: 2014-02-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.201 Å) Cite: Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science, 343, 2014
4ONE	Crystal Structure of a 3-oxoacyl-[acyl-carrier protein] reductase from Brucella melitensis Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-oxoacyl-(Acyl-carrier protein) reductase, CHLORIDE ION Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2014-01-28 Release date: 2014-02-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal Structure of a 3-oxoacyl-[acyl-carrier protein] reductase from Brucella melitensis To be Published
6KFZ	SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec at 1.96 angstrom resolution Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE Authors: Nakamura, R, Takahashi, Y, Fujishiro, T. Deposit date: 2019-07-09 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020
6QO8	Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis anaerobically soaked with ferrous ions Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ... Authors: Grave, K, Hogbom, M. Deposit date: 2019-02-12 Release date: 2019-08-21 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.31921768 Å) Cite: Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access. J.Biol.Inorg.Chem., 24, 2019
6QO9	Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis soaked with manganese ions Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ... Authors: Grave, K, Hogbom, M. Deposit date: 2019-02-12 Release date: 2019-08-21 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.299 Å) Cite: Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access. J.Biol.Inorg.Chem., 24, 2019
8C6C	Light SFX structure of D.m(6-4)photolyase at 300ps time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C6H	Light SFX structure of D.m(6-4)photolyase at 2ps time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C1U	SFX structure of D.m(6-4)photolyase Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2022-12-21 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C69	Light SFX structure of D.m(6-4)photolyase at 100 microsecond time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C6A	Light SFX structure of D.m(6-4)photolyase at 1ps time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C6B	Light SFX structure of D.m(6-4)photolyase at 20ps time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8C6F	Light SFX structure of D.m(6-4)photolyase at 400fs time delay Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL Authors: Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S. Deposit date: 2023-01-11 Release date: 2023-11-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography. Nat.Chem., 16, 2024
8CI4	Crystal structure of doubly S-methanethiolated rabbit M-type creatine kinase Descriptor: CITRATE ANION, Creatine kinase M-type Authors: Joergensen, M.H, Andersen, D.G, Andersen, G.R. Deposit date: 2023-02-08 Release date: 2023-12-13 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Chemical Zymogens and Transmembrane Activation of Transcription in Synthetic Cells. Adv Mater, 36, 2024
6QO7	Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis aerobically soaked with ferrous ions (photo-reduced) Descriptor: CHLORIDE ION, FE (II) ION, Ribonucleoside-diphosphate reductase subunit beta Authors: Grave, K, Hogbom, M. Deposit date: 2019-02-12 Release date: 2019-08-21 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.628 Å) Cite: Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access. J.Biol.Inorg.Chem., 24, 2019
6KQQ	NSD1 SET domain in complex with BT3 and SAM Descriptor: 2-azanyl-6-[(2-azanyl-4-oxidanyl-1,3-benzothiazol-6-yl)disulfanyl]-1,3-benzothiazol-4-ol, 2-azanyl-6-sulfanyl-1,3-benzothiazol-4-ol, CALCIUM ION, ... Authors: Cho, H.J, Cierpicki, T. Deposit date: 2019-08-18 Release date: 2020-09-02 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Covalent inhibition of NSD1 histone methyltransferase. Nat.Chem.Biol., 16, 2020
6KR0	Crystal structure of HL homo-diabody Descriptor: HL diabody Authors: Tanaka, Y. Deposit date: 2019-08-20 Release date: 2020-08-26 Last modified: 2021-09-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Association behavior and control of the quality of cancer therapeutic bispecific diabodies expressed in Escherichia coli Biochem Eng J, 160, 2020
8CPR	G13D mutant of KRAS4b (2-169) bound to GDP with the switch-I in fully open conformation crystallized in sodium potassium phosphate buffer Descriptor: GTPase KRas, N-terminally processed, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Moche, M, Jungholm, O, Strandback, E, Ampah-Korsah, H, Nyman, T, Orwar, O. Deposit date: 2023-03-03 Release date: 2024-06-12 Last modified: 2024-09-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Novel druggable space in human KRAS G13D discovered using structural bioinformatics and a P-loop targeting monoclonal antibody. Sci Rep, 14, 2024
6HB8	Crystal structure of OXA-517 beta-lactamase Descriptor: 1,2-ETHANEDIOL, 2-ETHOXYETHANOL, Beta-lactamase, ... Authors: Raczynska, J.E, Dabos, L, Zavala, A, Retailleau, P, Iorga, B, Jaskolski, M, Naas, T. Deposit date: 2018-08-09 Release date: 2019-08-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Genetic, biochemical and structural characterization of OXA-517, an OXA-48-like extended-spectrum cephalosporins and carbapenems-hydrolyzing beta-lactamase To Be Published

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