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5N2H
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BU of 5n2h by Molmil
Structure of the E9 DNA polymerase exonuclease deficient mutant (D166A+E168A) from vaccinia virus
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Tarbouriech, N, Burmeister, W.P, Iseni, F.
Deposit date:2017-02-07
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding.
Nat Commun, 8, 2017
4R54
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BU of 4r54 by Molmil
Complex crystal structure of sp-Aspartate-Semialdehyde-Dehydrogenase with 3-carboxy-ethyl-phthalic acid
Descriptor: 3-(2-carboxyethyl)benzene-1,2-dicarboxylic acid, ACETATE ION, Aspartate-semialdehyde dehydrogenase, ...
Authors:Pavlovsky, A.G, Viola, R.E.
Deposit date:2014-08-20
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway.
Acta Crystallogr.,Sect.D, 70, 2014
6HES
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BU of 6hes by Molmil
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with the NVP-BHG712 derivative AT050
Descriptor: 1,2-ETHANEDIOL, 4-methyl-3-[(2-pyridin-3-ylquinazolin-4-yl)amino]-~{N}-[3-(trifluoromethyl)phenyl]benzamide, Ephrin type-A receptor 2
Authors:Kudlinzki, D, Troester, A, Witt, K, Linhard, V.L, Gande, S.L, Saxena, K, Schwalbe, H.
Deposit date:2018-08-20
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.128 Å)
Cite:Effects of NVP-BHG712 chemical modifications on EPHA2 binding and affinity
To Be Published
9OMW
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BU of 9omw by Molmil
Crystal structure of E. coli ApaH in complex with Ap4U
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], GLYCEROL, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-14
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
8XB1
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BU of 8xb1 by Molmil
Crystal structure of FLT3 in complex with a Pyrazinamide Macrocycle derivative
Descriptor: 3^3-ethyl-5^4-morpholino-6,9-dioxa-2,4-diaza-3(2,6)-pyrazina-1(4,1)-piperidina-5(1,3)-benzenacycloundecaphane-3^5-carboxamide, Receptor-type tyrosine-protein kinase FLT3
Authors:Guo, M, Chen, Y.
Deposit date:2023-12-05
Release date:2024-12-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure-Based Optimization of Pyrazinamide-Containing Macrocyclic Derivatives as Fms-like Tyrosine Kinase 3 (FLT3) Inhibitors to Overcome Clinical Mutations.
Acs Pharmacol Transl Sci, 7, 2024
6HIY
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BU of 6hiy by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, MAGNESIUM ION, SPERMIDINE, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
9OP2
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BU of 9op2 by Molmil
Crystal structure of E. coli ApaH in complex with Ap4GUAA
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], MAGNESIUM ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-16
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
9OMU
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BU of 9omu by Molmil
Crystal structure of E. coli ApaH in complex with Ap4G
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], MAGNESIUM ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-14
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
4ZF5
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BU of 4zf5 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
8E4R
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BU of 8e4r by Molmil
Room-temperature X-ray structure of SARS-CoV-2 main protease H41A miniprecursor mutant in complex with GC373
Descriptor: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, Replicase polyprotein 1ab
Authors:Coates, L, Kneller, D.W, Kovalevsky, A.
Deposit date:2022-08-18
Release date:2022-11-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unmasking the Conformational Stability and Inhibitor Binding to SARS-CoV-2 Main Protease Active Site Mutants and Miniprecursor.
J.Mol.Biol., 434, 2022
5J71
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BU of 5j71 by Molmil
Crystal structure of pyruvate dehydrogenase kinase isoform 2 in complex with inhibitor PS35
Descriptor: 4-({5-[(piperidin-4-yl)amino]-1,3-dihydro-2H-isoindol-2-yl}sulfonyl)benzene-1,3-diol, L(+)-TARTARIC ACID, [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, ...
Authors:Gui, W.J, Tso, S.C, Chuang, J.L, Wu, C.Y, Qi, X, Wynn, R.M, Chuang, D.T.
Deposit date:2016-04-05
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Development of Dihydroxyphenyl Sulfonylisoindoline Derivatives as Liver-Targeting Pyruvate Dehydrogenase Kinase Inhibitors.
J. Med. Chem., 60, 2017
6HS2
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BU of 6hs2 by Molmil
EthR2 in complex with compound 31 (BDM76150)
Descriptor: (1~{S},5~{R})-8-[2-[4-(trifluoromethyl)phenyl]ethyl]-8-azabicyclo[3.2.1]octan-3-one, Probable transcriptional regulatory protein
Authors:Wintjens, R, Wohlkonig, A, Tanina, A.
Deposit date:2018-09-28
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:A fragment-based approach towards the discovery of N-substituted tropinones as inhibitors of Mycobacterium tuberculosis transcriptional regulator EthR2.
Eur J Med Chem, 167, 2019
7UEI
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BU of 7uei by Molmil
Horse liver alcohol dehydrogenase with NAD and pentafluorobenzyl alcohol at 100 K, 1.2 A, crystal 16
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL, Alcohol dehydrogenase E chain, ...
Authors:Plapp, B.V, Gakhar, L.
Deposit date:2022-03-21
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Dependence of crystallographic atomic displacement factors on temperature (25-150 K) for complexes of horse liver alcohol dehydrogenases
Acta Crystallogr.,Sect.D, D78, 2022
7TPO
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BU of 7tpo by Molmil
Selenium-incorporated nitrogenase Fe-protein (Av2-Se) from A. vinelandii (1 mM KSeCN)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Fe4-Se4 cluster, IRON/SULFUR CLUSTER, ...
Authors:Buscagan, T.M, Kaiser, J.T, Rees, D.C.
Deposit date:2022-01-25
Release date:2022-09-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Selenocyanate derived Se-incorporation into the Nitrogenase Fe protein cluster.
Elife, 11, 2022
7TQK
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BU of 7tqk by Molmil
Selenium-incorporated nitrogenase Fe protein (Av2-Se) from A. vinelandii (1 mM KSeCN)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Fe4-Se4 cluster, IRON/SULFUR CLUSTER, ...
Authors:Buscagan, T.M, Kaiser, J.T, Rees, D.C.
Deposit date:2022-01-26
Release date:2022-09-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Selenocyanate derived Se-incorporation into the Nitrogenase Fe protein cluster.
Elife, 11, 2022
9OPH
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BU of 9oph by Molmil
Crystal structure of E. coli ApaH in complex with Up4AG
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], MAGNESIUM ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-19
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
5JOF
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BU of 5jof by Molmil
Crystal structure of VRC03 gHVgLV antigen-binding fragment.
Descriptor: SULFATE ION, VRC03 gHV heavy chain, VRC03 gLV light chain
Authors:Joyce, M.G, Mascola, J.R, Kwong, P.D.
Deposit date:2016-05-02
Release date:2016-07-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.208 Å)
Cite:Somatic Hypermutation-Induced Changes in the Structure and Dynamics of HIV-1 Broadly Neutralizing Antibodies.
Structure, 24, 2016
9PLK
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BU of 9plk by Molmil
Interaction of human CYP3A4 with the drug darifenacin
Descriptor: Cytochrome P450 3A4, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Sevrioukova, I.F.
Deposit date:2025-07-15
Release date:2025-09-17
Last modified:2025-10-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Interaction of cytochrome P450 3A4 with cannabinoids and the drug darifenacin.
J.Biol.Chem., 301, 2025
8S42
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BU of 8s42 by Molmil
Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 80 (1124898)
Descriptor: 14-3-3 protein sigma, 2-chloranyl-1-[8-[3-fluoranyl-4-(trifluoromethyl)phenyl]sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]ethanone, CHLORIDE ION, ...
Authors:Konstantinidou, M, Vickery, H, Pennings, M.A.M, Virta, J, Visser, E.J, Oetelaar, M.C.M, Overmans, M, Neitz, J, Ottmann, C, Brunsveld, L, Arkin, M.R.
Deposit date:2024-02-21
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Small molecule stabilization of the 14-3-3sigma/CRAF complex inhibits the MAPK pathway
To Be Published
8XTV
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BU of 8xtv by Molmil
Crystal structure of AaHPPD-Y14150 complex
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION, [3-ethyl-1-methyl-2,2-bis(oxidanylidene)-2$l^{6},1,3-benzothiadiazol-5-yl]-(1-methyl-5-oxidanyl-pyrazol-4-yl)methanone
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2024-01-11
Release date:2025-01-15
Last modified:2025-07-02
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Repurposing 4-Hydroxyphenylpyruvate dioxygenase inhibitors as novel agents for mosquito control: A structure-based design approach.
Int.J.Biol.Macromol., 315, 2025
5L88
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BU of 5l88 by Molmil
AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSILATED, CRYSTAL FORM I, non-parsimonious model
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Anti-afamin antibody N14, Fab fragment, ...
Authors:Rupp, B, Naschberger, A.
Deposit date:2016-06-07
Release date:2016-08-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling.
Acta Crystallogr D Struct Biol, 72, 2016
6HWS
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BU of 6hws by Molmil
Keap1 - inhibitor complex
Descriptor: 1,2-ETHANEDIOL, 2-[[4-[2-hydroxy-2-oxoethyl-(4-methoxyphenyl)sulfonyl-amino]-3-phenylmethoxy-phenyl]-(4-methoxyphenyl)sulfonyl-amino]ethanoic acid, Kelch-like ECH-associated protein 1, ...
Authors:Talapatra, S.K, Kozielski, F, Wells, G, Georgakopoulos, N.D.
Deposit date:2018-10-13
Release date:2019-10-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Keap1-inhibitor complex
To Be Published
5NDC
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BU of 5ndc by Molmil
Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide IIA, ...
Authors:Andersson, R, Safari, C, Dods, R, Nango, E, Tanaka, R, Nakane, T, Tono, K, Joti, Y, Bath, P, Dunevall, E, Bosman, E, Nureki, O, Iwata, S, Neutze, R, Branden, G.
Deposit date:2017-03-08
Release date:2017-08-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature.
Sci Rep, 7, 2017
5JMF
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BU of 5jmf by Molmil
Heparinase III-BT4657 gene product
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Heparinase III protein, ...
Authors:Ulaganathan, T.S, Shi, R, Yao, D, Garron, M.-L, Cherney, M, Cygler, M.
Deposit date:2016-04-28
Release date:2016-05-25
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (1.854 Å)
Cite:Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657).
Glycobiology, 27, 2017
7CB8
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BU of 7cb8 by Molmil
Structure of a FIC-domain protein from Mycobacterium marinum in complex with CDP
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CYTIDINE-5'-DIPHOSPHATE, ...
Authors:Kumar, S, Singh, A, Penmatsa, A, Surolia, A.
Deposit date:2020-06-11
Release date:2021-08-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of of a FIC-domain protein from Mycobacterium marinum
To Be Published

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