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7AD1
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BU of 7ad1 by Molmil
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Authors:Rutten, L, Renault, L.L.R, Juraszek, J, Langedijk, J.P.M.
Deposit date:2020-09-14
Release date:2020-11-04
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Stabilizing the closed SARS-CoV-2 spike trimer.
Nat Commun, 12, 2021
7U53
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BU of 7u53 by Molmil
Nucleosome core particle with AP-site at SHL0
Descriptor: DNA (144-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
3JWU
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BU of 3jwu by Molmil
Structure of rat neuronal nitric oxide synthase R349A mutant heme domain in complex with N1-{(3'R,4'S)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine, ...
Authors:Delker, S.L, Li, H, Poulos, T.L.
Deposit date:2009-09-18
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Unexpected binding modes of nitric oxide synthase inhibitors effective in the prevention of a cerebral palsy phenotype in an animal model.
J.Am.Chem.Soc., 132, 2010
3JX4
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BU of 3jx4 by Molmil
Structure of rat neuronal nitric oxide synthase D597N/M336V mutant heme domain in complex with N1-{(3'R,4'S)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine, ...
Authors:Delker, S.L, Li, H, Poulos, T.L.
Deposit date:2009-09-18
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Unexpected binding modes of nitric oxide synthase inhibitors effective in the prevention of a cerebral palsy phenotype in an animal model.
J.Am.Chem.Soc., 132, 2010
7TW8
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BU of 7tw8 by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, Transcription factor ETV6,Proofreading exoribonuclease nsp14 chimera, ZINC ION
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2022-02-06
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-resolution structures of the SARS-CoV-2 N7-methyltransferase inform therapeutic development.
Nat.Struct.Mol.Biol., 29, 2022
3JXP
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BU of 3jxp by Molmil
Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida
Descriptor: CHLORIDE ION, Coenzyme PQQ synthesis protein B, ZINC ION
Authors:Metlitzky, M, Schwarzenbacher, R.
Deposit date:2009-09-21
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of PqqB from Pseudomonas putida at 2.2 A resolution
J. Biophys. Chem., 3, 2012
7U2X
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BU of 7u2x by Molmil
Cryo-EM structure of the pancreatic ATP-sensitive potassium channel in the presence of carbamazepine and ATP with Kir6.2-CTD in the down conformation
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Shyng, S.L, Sung, M.W, Driggers, C.M.
Deposit date:2022-02-25
Release date:2022-08-31
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Ligand-mediated Structural Dynamics of a Mammalian Pancreatic K ATP Channel.
J.Mol.Biol., 434, 2022
5LOU
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BU of 5lou by Molmil
human NUDT22
Descriptor: Nucleoside diphosphate-linked moiety X motif 22, PHOSPHATE ION
Authors:Carter, M, Stenmark, P.
Deposit date:2016-08-10
Release date:2017-09-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Human NUDT22 Is a UDP-Glucose/Galactose Hydrolase Exhibiting a Unique Structural Fold.
Structure, 26, 2018
3AMB
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BU of 3amb by Molmil
Protein kinase A sixfold mutant model of Aurora B with inhibitor VX-680
Descriptor: CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Pflug, A, de Oliveira, T.M, Bossemeyer, D, Engh, R.A.
Deposit date:2010-08-18
Release date:2011-08-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mutants of protein kinase A that mimic the ATP-binding site of Aurora kinase
Biochem.J., 440, 2011
2JGL
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BU of 2jgl by Molmil
Crystal structure of mouse acetylcholinesterase inhibited by aged VX and sarin
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYLCHOLINESTERASE, ...
Authors:Hornberg, A, Tunemalm, A.-K, Ekstrom, F.
Deposit date:2007-02-13
Release date:2007-04-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of Acetylcholinesterase in Complex with Organophosphorus Compounds Suggest that the Acyl Pocket Modulates the Aging Reaction by Precluding the Formation of the Trigonal Bipyramidal Transition State.
Biochemistry, 46, 2007
7LMW
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BU of 7lmw by Molmil
Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid
Descriptor: 7-methyl-3-(1~{H}-pyrazol-4-yl)-1~{H}-indole-2-carboxylic acid, ACETATE ION, Advanced glycosylation end product-specific receptor, ...
Authors:Salay, L.E, Kozlyuk, N, Gilston, B.A, Gogliotti, R.D, Christov, P.P, Kim, K, Ovee, M, Waterson, A.G, Chazin, W.J.
Deposit date:2021-02-06
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Proteins, 89, 2021
3AOG
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BU of 3aog by Molmil
Crystal structure of glutamate dehydrogenase (GdhB) from Thermus thermophilus (Glu bound form)
Descriptor: AMMONIUM ION, GLUTAMIC ACID, Glutamate dehydrogenase, ...
Authors:Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2010-09-28
Release date:2011-09-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An unique allosteric regulation revealed by crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
2JBM
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BU of 2jbm by Molmil
QPRTASE STRUCTURE FROM HUMAN
Descriptor: NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE, S,R MESO-TARTARIC ACID
Authors:Liu, H, Naismith, J.H.
Deposit date:2006-12-08
Release date:2007-11-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Kinetic Characterization of Quinolinate Phosphoribosyltransferase (Hqprtase) from Homo Sapiens.
J.Mol.Biol., 373, 2007
5LTQ
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BU of 5ltq by Molmil
Structure of the Yellow Fluorescent Protein lanYFP from Branchiostoma lanceolatum at pH 7.5
Descriptor: CHLORIDE ION, Green fluorescent protein blFP-Y3
Authors:Clavel, D, Gotthard, G, Royant, A.
Deposit date:2016-09-07
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural analysis of the bright monomeric yellow-green fluorescent protein mNeonGreen obtained by directed evolution.
Acta Crystallogr D Struct Biol, 72, 2016
3JAV
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BU of 3jav by Molmil
Structure of full-length IP3R1 channel in the apo-state determined by single particle cryo-EM
Descriptor: Inositol 1,4,5-trisphosphate receptor type 1
Authors:Fan, G, Baker, M.L, Wang, Z, Baker, M.R, Sinyagovskiy, P.A, Chiu, W, Ludtke, S.J, Serysheva, I.I.
Deposit date:2015-06-30
Release date:2015-10-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Gating machinery of InsP3R channels revealed by electron cryomicroscopy.
Nature, 527, 2015
2N6P
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BU of 2n6p by Molmil
Solution NMR structure of Outer Membrane Protein G P92A mutant from Pseudomonas aeruginosa
Descriptor: Outer membrane protein OprG
Authors:Kucharska, I, Seelheim, P, Edrington, T.C, Liang, B, Tamm, L.K.
Deposit date:2015-08-27
Release date:2015-12-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:OprG Harnesses the Dynamics of its Extracellular Loops to Transport Small Amino Acids across the Outer Membrane of Pseudomonas aeruginosa.
Structure, 23, 2015
3J92
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BU of 3j92 by Molmil
Structure and assembly pathway of the ribosome quality control complex
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Shao, S, Brown, A, Santhanam, B, Hegde, R.S.
Deposit date:2014-12-02
Release date:2015-01-21
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure and Assembly Pathway of the Ribosome Quality Control Complex.
Mol.Cell, 57, 2015
7PMZ
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BU of 7pmz by Molmil
Crystal structure of Streptomyces coelicolor guaB (IMP dehydrogenase) bound to ATP and ppGpp at 2.0 A resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-5'-monophosphate dehydrogenase, ...
Authors:Fernandez-Justel, D, Revuelta, J.L, Buey, R.M.
Deposit date:2021-09-04
Release date:2022-05-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Diversity of mechanisms to control bacterial GTP homeostasis by the mutually exclusive binding of adenine and guanine nucleotides to IMP dehydrogenase.
Protein Sci., 31, 2022
5LVL
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BU of 5lvl by Molmil
Human PDK1 Kinase Domain in Complex with Compound PS653 Bound to the ATP-Binding Site
Descriptor: 2,6-DIHYDROANTHRA/1,9-CD/PYRAZOL-6-ONE, 3-phosphoinositide-dependent protein kinase 1, DIMETHYL SULFOXIDE, ...
Authors:Schulze, J.O, Saladino, G, Busschots, K, Neimanis, S, Suess, E, Odadzic, D, Zeuzem, S, Hindie, V, Herbrand, A.K, Lisa, M.N, Alzari, P.M, Gervasio, F.L, Biondi, R.M.
Deposit date:2016-09-14
Release date:2016-10-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Bidirectional Allosteric Communication between the ATP-Binding Site and the Regulatory PIF Pocket in PDK1 Protein Kinase.
Cell Chem Biol, 23, 2016
3AF7
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BU of 3af7 by Molmil
Crystal Structure of 25Pd(allyl)/apo-Fr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Abe, S, Hikage, T, Watanabe, Y, Kitagawa, S, Ueno, T.
Deposit date:2010-02-24
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Mechanism of Accumulation and Incorporation of Organometallic Pd Complexes into the Protein Nanocage of apo-Ferritin.
Inorg.Chem., 49, 2010
3JCA
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BU of 3jca by Molmil
Core model of the Mouse Mammary Tumor Virus intasome
Descriptor: 5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*CP*TP*G)-3', 5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*GP*CP*GP*GP*CP*A)-3', Integrase, ...
Authors:Lyumkis, D.L, Ballandras-Colas, A, Brown, M, Cook, N.J, Dewdney, T.G, Demeler, B, Cherepanov, P, Engelman, A.N.
Deposit date:2015-11-24
Release date:2016-02-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function.
Nature, 530, 2016
7PVH
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BU of 7pvh by Molmil
Crystal structure of the folded domain of PorN
Descriptor: Por secretion system protein porN/gldN
Authors:Fuchsbauer, O, Roussel, A, Leone, P.
Deposit date:2021-10-04
Release date:2022-05-18
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional analyses of the Porphyromonas gingivalis type IX secretion system PorN protein.
J.Biol.Chem., 298, 2022
7LVI
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BU of 7lvi by Molmil
CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND (2R)-2-AMINO-N-[3-METHOXY-4- (1,3-OXAZOL-5-YL)PHENYL]-4-METHYLPENTANAMIDE
Descriptor: (2R,3R)-N-[3-methoxy-4-(1,3-oxazol-5-yl)phenyl]-3-(propan-2-yl)piperidine-2-carboxamide, 5-[(4-aminopiperidin-1-yl)methyl]-N-{3-[5-(propan-2-yl)-1,3,4-thiadiazol-2-yl]phenyl}pyrrolo[2,1-f][1,2,4]triazin-4-amine, AP2-associated protein kinase 1, ...
Authors:Muckelbauer, J.K.
Deposit date:2021-02-25
Release date:2021-07-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery, Structure-Activity Relationships, and In Vivo Evaluation of Novel Aryl Amides as Brain Penetrant Adaptor Protein 2-Associated Kinase 1 (AAK1) Inhibitors for the Treatment of Neuropathic Pain.
J.Med.Chem., 64, 2021
2NA0
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BU of 2na0 by Molmil
NMR structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) mutant V77E in a Ca2+-free/Mg2+-bound Activator State
Descriptor: Guanylyl cyclase-activating protein 1
Authors:Lim, S, Ames, J.B.
Deposit date:2015-12-16
Release date:2015-12-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) Mutant V77E in a Ca2+-free/Mg2+-bound Activator State.
J.Biol.Chem., 291, 2016
5LWD
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BU of 5lwd by Molmil
Thermolysin in complex with inhibitor (JC96)
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Krimmer, S.G, Cramer, J, Heine, A, Klebe, G.
Deposit date:2016-09-15
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Elucidating the Origin of Long Residence Time Binding for Inhibitors of the Metalloprotease Thermolysin.
ACS Chem. Biol., 12, 2017

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