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4FBC
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BU of 4fbc by Molmil
Structure of mutant RIP from barley seeds in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Protein synthesis inhibitor I
Authors:Lee, B.-G, Kim, M.K, Suh, S.W, Song, H.K.
Deposit date:2012-05-22
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the ribosome-inactivating protein from barley seeds reveal a unique activation mechanism.
Acta Crystallogr.,Sect.D, 68, 2012
5ICH
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BU of 5ich by Molmil
Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with 8BO-AMP
Descriptor: 5'-O-[(S)-[(8-bromooctanoyl)oxy](hydroxy)phosphoryl]adenosine, Lipoate--protein ligase
Authors:Hughes, S.J, Song, J.H, Antoshchenko, T, Park, H.W.
Deposit date:2016-02-23
Release date:2017-03-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with 8BO-AMP
to be published
2CGH
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BU of 2cgh by Molmil
crystal structure of biotin ligase from Mycobacterium tuberculosis
Descriptor: BIOTIN LIGASE
Authors:Ma, Q, Wilmanns, M.
Deposit date:2006-03-06
Release date:2007-05-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Active Site Conformational Changes Upon Reaction Intermediate Biotinyl-5'-AMP Binding in Biotin Protein Ligase from Mycobacterium Tuberculosis.
Protein Sci., 23, 2014
4NO5
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BU of 4no5 by Molmil
Crystal structure of non-phosphorylated form of AMPD2 phosphopeptide bound to HLA-A2
Descriptor: 1,2-ETHANEDIOL, AMP deaminase 2, Beta-2-microglobulin, ...
Authors:Mohammed, F, Stones, D.H, Willcox, B.E.
Deposit date:2013-11-19
Release date:2014-12-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:The antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status.
Oncotarget, 8, 2017
7XMV
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BU of 7xmv by Molmil
E.coli phosphoribosylpyrophosphate (PRPP) synthetase type A(AMP/ADP) filament bound with ADP, AMP and R5P
Descriptor: 5-O-phosphono-alpha-D-ribofuranose, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Hu, H.H, Lu, G.M, Chang, C.C, Liu, J.L.
Deposit date:2022-04-27
Release date:2022-06-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Filamentation modulates allosteric regulation of PRPS.
Elife, 11, 2022
3UK2
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BU of 3uk2 by Molmil
The structure of Pantothenate synthetase from Burkholderia thailandensis
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-11-08
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Combining functional and structural genomics to sample the essential Burkholderia structome.
Plos One, 8, 2013
3DAH
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BU of 3dah by Molmil
2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei
Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, Ribose-phosphate pyrophosphokinase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2008-05-29
Release date:2008-06-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Combining functional and structural genomics to sample the essential Burkholderia structome.
Plos One, 8, 2013
2VFY
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BU of 2vfy by Molmil
AKAP18 delta central domain
Descriptor: AKAP18 DELTA
Authors:Gold, M.G, Smith, F.D, Scott, J.D, Barford, D.
Deposit date:2007-11-06
Release date:2008-05-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Akap18 Contains a Phosphoesterase Domain that Binds AMP
J.Mol.Biol., 375, 2008
5EY8
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BU of 5ey8 by Molmil
Structure of FadD32 from Mycobacterium smegmatis complexed to AMPC20
Descriptor: Acyl-CoA synthase, GLYCEROL, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl icosyl hydrogen phosphate
Authors:Guillet, V, Maveyraud, L, Mourey, L.
Deposit date:2015-11-24
Release date:2015-12-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insight into Structure-Function Relationships and Inhibition of the Fatty Acyl-AMP Ligase (FadD32) Orthologs from Mycobacteria.
J.Biol.Chem., 291, 2016
3NGN
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BU of 3ngn by Molmil
Crystal structure of the human CNOT6L nuclease domain in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CCR4-NOT transcription complex subunit 6-like
Authors:Wang, H, Morita, M, Yang, W, Bartlam, M, Yamamoto, T, Rao, Z.
Deposit date:2010-06-12
Release date:2010-07-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity.
Embo J., 2010
9AVR
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BU of 9avr by Molmil
Human eIF4A-1 in complex with AMP-PNP, RNA, and the inhibitor silvestrol
Descriptor: Eukaryotic initiation factor 4A-I, IODIDE ION, MAGNESIUM ION, ...
Authors:Bhatt, G.B, Naineni, S.K, Cencic, R.C, Jiramongkolsiri, E.J, Huang, S.H, Pelletier, J.P, Nagar, B.N.
Deposit date:2024-03-04
Release date:2024-10-23
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Human eIF4A-1 in complex with AMP-PNP, RNA, and the inhibitor silvestrol
To Be Published
4R78
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BU of 4r78 by Molmil
Crystal structure of LicA in complex with AMP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, Choline kinase
Authors:Wang, L, Jiang, Y.L, Zhou, C.Z, Chen, Y.X.
Deposit date:2014-08-27
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and enzymatic characterization of the choline kinase LicA from Streptococcus pneumoniae
Plos One, 10, 2015
2BZK
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BU of 2bzk by Molmil
CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH AMPPNP AND PIMTIDE
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PIMTIDE, PROTO-ONCOGENE SERINE THREONINE PROTEIN KINASE PIM1
Authors:Debreczeni, J.E, Bullock, A, Knapp, S, von Delft, F, Sundstrom, M, Arrowsmith, C, Weigelt, J, Edwards, A.
Deposit date:2005-08-18
Release date:2005-11-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of the Human Pim1 in Complex with Amppnp and Pimtide
To be Published
3SGI
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BU of 3sgi by Molmil
Crystal structure of DNA ligase A BRCT domain deleted mutant of Mycobacterium tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase
Authors:Kukshal, V, Ravishankar, R.
Deposit date:2011-06-15
Release date:2012-06-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal Structure of Domain deleted mutant of Mycobacterium tuberculosis NAD+ dependent DNA ligase capture the AMP cofactor in a new state
To be Published
5E7J
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BU of 5e7j by Molmil
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMP
Descriptor: ADENOSINE MONOPHOSPHATE, ATP-dependent RNA helicase DDX3X
Authors:Floor, S.N, Condon, K.J, Doudna, J.A.
Deposit date:2015-10-12
Release date:2015-12-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3.
J.Biol.Chem., 291, 2016
4FWK
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BU of 4fwk by Molmil
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with AMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013
3TW2
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BU of 3tw2 by Molmil
High resolution structure of human histidine triad nucleotide-binding protein 1 (hHINT1)/AMP complex in a monoclinic space group
Descriptor: ADENOSINE MONOPHOSPHATE, Histidine triad nucleotide-binding protein 1
Authors:Dolot, R.M, Wlodarczyk, A, Ozga, M, Krakowiak, A, Nawrot, B.
Deposit date:2011-09-21
Release date:2011-11-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A new crystal form of human histidine triad nucleotide-binding protein 1 (hHINT1) in complex with adenosine 5'-monophosphate at 1.38 A resolution.
Acta Crystallogr.,Sect.F, 68, 2012
7D2F
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BU of 7d2f by Molmil
Lp major histidine acid phosphatase mutant D281A/5'-AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Major acid phosphatase
Authors:Guo, Y, Teng, Y.
Deposit date:2020-09-16
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into a new substrate binding mode of a histidine acid phosphatase from Legionella pneumophila.
Biochem.Biophys.Res.Commun., 540, 2021
2F17
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BU of 2f17 by Molmil
Mouse Thiamin Pyrophosphokinase in a Ternary Complex with Pyrithiamin Pyrophosphate and AMP at 2.5 angstrom
Descriptor: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ...
Authors:Liu, J.Y, Timm, D.E, Hurley, T.D.
Deposit date:2005-11-14
Release date:2005-11-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pyrithiamine as a substrate for thiamine pyrophosphokinase
J.Biol.Chem., 281, 2006
8JGL
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BU of 8jgl by Molmil
Cryo-EM structure of mClC-3 with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, H(+)/Cl(-) exchange transporter 3
Authors:Wan, Y.Z.Q, Yang, F.
Deposit date:2023-05-21
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Structural basis of adenine nucleotides regulation and neurodegenerative pathology in ClC-3 exchanger.
Nat Commun, 15, 2024
3SZQ
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BU of 3szq by Molmil
Structure of an S. pombe APTX/DNA/AMP/Zn complex
Descriptor: 5'-D(*CP*CP*CP*TP*G)-3', 5'-D(*TP*AP*TP*CP*GP*GP*AP*AP*TP*CP*AP*GP*GP*G)-3', ADENOSINE MONOPHOSPHATE, ...
Authors:Tumbale, P, Krahn, J, Williams, R.S.
Deposit date:2011-07-19
Release date:2011-10-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Structure of an aprataxin-DNA complex with insights into AOA1 neurodegenerative disease.
Nat.Struct.Mol.Biol., 18, 2011
6ZZ9
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BU of 6zz9 by Molmil
Crystal structure of CbpB from Streptococcus agalactiae
Descriptor: CBS domain-containing protein, PLATINUM (II) ION, SULFATE ION
Authors:Mechaly, A.E, Covaleda-Cortes, G, Kaminski, P.A.
Deposit date:2020-08-04
Release date:2021-08-18
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.644 Å)
Cite:The c-di-AMP-binding protein CbpB modulates the level of ppGpp alarmone in Streptococcus agalactiae.
Febs J., 2023
4DH5
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BU of 4dh5 by Molmil
Room temperature X-ray structure of cAMP dependent Protein Kinase A catalytic subunit with high Mg2+, ADP, Phosphate, and IP20
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Kovalevsky, A.Y, Langan, P.
Deposit date:2012-01-27
Release date:2012-06-27
Last modified:2013-01-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Low- and room-temperature X-ray structures of protein kinase A ternary complexes shed new light on its activity.
Acta Crystallogr.,Sect.D, 68, 2012
1FPI
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BU of 1fpi by Molmil
FRUCTOSE-1,6-BISPHOSPHATASE (D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE) COMPLEXED WITH AMP, 2,5-ANHYDRO-D-GLUCITOL-1,6-BISPHOSPHATE AND POTASSIUM IONS (100 MM)
Descriptor: 2,5-anhydro-1,6-di-O-phosphono-D-glucitol, ADENOSINE MONOPHOSPHATE, FRUCTOSE-1,6-BISPHOSPHATASE, ...
Authors:Villeret, V, Lipscomb, W.N.
Deposit date:1995-06-02
Release date:1996-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic evidence for the action of potassium, thallium, and lithium ions on fructose-1,6-bisphosphatase.
Proc.Natl.Acad.Sci.USA, 92, 1995
1FPJ
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BU of 1fpj by Molmil
FRUCTOSE-1,6-BISPHOSPHATASE (D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE) COMPLEXED WITH AMP, 2,5-ANHYDRO-D-GLUCITOL-1,6-BISPHOSPHATE, THALLIUM (10 MM) AND LITHIUM IONS (10 MM)
Descriptor: 2,5-anhydro-1,6-di-O-phosphono-D-glucitol, ADENOSINE MONOPHOSPHATE, FRUCTOSE-1,6-BISPHOSPHATASE, ...
Authors:Villeret, V, Lipscomb, W.N.
Deposit date:1995-06-02
Release date:1996-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallographic evidence for the action of potassium, thallium, and lithium ions on fructose-1,6-bisphosphatase.
Proc.Natl.Acad.Sci.USA, 92, 1995

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