Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1658 件

6M0W
DownloadVisualize
BU of 6m0w by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with the AGAA PAM
分子名称: CRISPR-associated endonuclease Cas9 1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*GP*AP*AP*GP*C)-3'), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-23
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6M0X
DownloadVisualize
BU of 6m0x by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM
分子名称: BARIUM ION, CRISPR-associated endonuclease Cas9 1, DNA (28-MER), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-23
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.561 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6M0V
DownloadVisualize
BU of 6m0v by Molmil
Crsytal structure of streptococcus thermophilus Cas9 in complex with the GGAA PAM
分子名称: BARIUM ION, CRISPR-associated endonuclease Cas9 1, DNA (28-MER), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-22
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
8UAI
DownloadVisualize
BU of 8uai by Molmil
Crystal structure of hetero hexameric hazelnut allergen Cor a 9
分子名称: 11S globulin 1, 11S globulin 2, 11S globulin 3, ...
著者Zhang, Y.Z, Guo, F.
登録日2023-09-21
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Crystal structure of hetero hexameric 11S seed storage protein of hazelnut.
Plant Physiol Biochem., 210, 2024
4GKU
DownloadVisualize
BU of 4gku by Molmil
Crystal structure of beta lactamase in PET-15B
分子名称: Beta-lactamase TEM
著者Zhang, Y, Cao, C.
登録日2012-08-13
公開日2012-10-10
実験手法X-RAY DIFFRACTION (1.915 Å)
主引用文献Crystal structure of beta lactamase in PET-15B
To be published
6U3U
DownloadVisualize
BU of 6u3u by Molmil
Crystal Structure of Shiga Toxin 2K
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Shiga toxin 2K subunit A, ...
著者Zhang, Y.Z, He, X.H.
登録日2019-08-22
公開日2020-07-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.287 Å)
主引用文献Structural and Functional Characterization of Stx2k, a New Subtype of Shiga Toxin 2.
Microorganisms, 8, 2019
2MNY
DownloadVisualize
BU of 2mny by Molmil
NMR Structure of KDM5B PHD1 finger
分子名称: Lysine-specific demethylase 5B, ZINC ION
著者Zhang, Y, Yang, H.R, Guo, X, Rong, N.Y, Song, Y.J, Xu, Y.W, Lan, W.X, Xu, Y.H, Cao, C.
登録日2014-04-16
公開日2014-08-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
Protein Cell, 5, 2014
2MNZ
DownloadVisualize
BU of 2mnz by Molmil
NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)
分子名称: H3K4me0, Lysine-specific demethylase 5B, ZINC ION
著者Zhang, Y, Yang, H.R, Guo, X, Rong, N.Y, Song, Y.J, Xu, Y.W, Lan, W.X, Xu, Y.H, Cao, C.
登録日2014-04-16
公開日2014-08-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
Protein Cell, 5, 2014
2MK6
DownloadVisualize
BU of 2mk6 by Molmil
Structure determination of substrate binding domain of MecA
分子名称: Adapter protein MecA
著者Zhang, Y.-H, Zhang, Y, Jin, C, Shi, Y.
登録日2014-01-29
公開日2015-02-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure and interaction analysis of the substrate binding domain of MecA
To be Published
6N33
DownloadVisualize
BU of 6n33 by Molmil
Crystal structure of fms kinase domain with a small molecular inhibitor, PLX5622
分子名称: 6-fluoro-N-[(5-fluoro-2-methoxypyridin-3-yl)methyl]-5-[(5-methyl-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]pyridin-2-amine, Macrophage colony-stimulating factor 1 receptor
著者Zhang, Y.
登録日2018-11-14
公開日2019-09-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Sustained microglial depletion with CSF1R inhibitor impairs parenchymal plaque development in an Alzheimer's disease model.
Nat Commun, 10, 2019
5Z1W
DownloadVisualize
BU of 5z1w by Molmil
Cryo-EM structure of polycystic kidney disease-like channel PKD2L1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Polycystic kidney disease 2-like 1 protein
著者Zhang, Y.Q.
登録日2017-12-28
公開日2018-03-28
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.38 Å)
主引用文献Cryo-EM structure of the polycystic kidney disease-like channel PKD2L1.
Nat Commun, 9, 2018
5HMC
DownloadVisualize
BU of 5hmc by Molmil
Crystal structure of S. sahachiroi AziG complexed with 5-methyl naphthoic acid
分子名称: 5-methylnaphthalene-1-carboxylic acid, Azi13, SULFATE ION
著者Zhang, Y, Erb, M.S, Ealick, S.E.
登録日2016-01-15
公開日2016-02-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Polyketide Ring Expansion Mediated by a Thioesterase, Chain Elongation and Cyclization Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG.
Biochemistry, 55, 2016
5XZD
DownloadVisualize
BU of 5xzd by Molmil
Structure of acryloyl-CoA hydratase AcuH from Roseovarius nubinhibens ISM
分子名称: ACETIC ACID, Enoyl-CoA hydratase
著者Zhang, Y.Z, Wang, P, Cao, H.Y.
登録日2017-07-12
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular Insight into the Acryloyl-CoA Hydration by AcuH for Acrylate Detoxification in Dimethylsulfoniopropionate-Catabolizing Bacteria
Front Microbiol, 8, 2017
5XS9
DownloadVisualize
BU of 5xs9 by Molmil
Crystal structure of Mycobacterium smegmatis BioQ
分子名称: TetR family transcriptional regulator
著者Zhang, Y, Ji, Q, Feng, Y.
登録日2017-06-13
公開日2018-06-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of BioQ suggests a distinct regulatory mechanism for biotin, a nutritional virulence factor in Mycobacterium
To Be Published
5X87
DownloadVisualize
BU of 5x87 by Molmil
Crystal structure of a bacterial Bestrophin homolog from Klebsiella pneumoniae with a mutation L177T
分子名称: Bestrophin, ZINC ION
著者Zhang, Y, Chen, S, Yang, T.
登録日2017-03-01
公開日2017-11-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Patient-specific mutations impair BESTROPHIN1's essential role in mediating Ca2+-dependent Cl-currents in human RPE.
Elife, 6, 2017
5E18
DownloadVisualize
BU of 5e18 by Molmil
T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 8 (RPo-CCC-8)
分子名称: DNA (28-MER), DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Zhang, Y, Ebright, R.H.
登録日2015-09-29
公開日2016-03-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
Science, 351, 2016
8KF9
DownloadVisualize
BU of 8kf9 by Molmil
Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 50 mM K+ solution
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*G)-3')
著者Zhang, Y.P, Lan, W.X, Yin, S.W, Liu, Z.J, Xue, H.J, Cao, C.Y.
登録日2023-08-15
公開日2024-09-04
実験手法SOLUTION NMR
主引用文献Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET Indicates New Target for Anti-cancer Drug Screening
To Be Published
8KFL
DownloadVisualize
BU of 8kfl by Molmil
Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 100 mM Na+
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*G)-3')
著者Zhang, Y.P, Lan, W.X, Yin, S.W, Liu, Z.J, Xue, H.J, Cao, C.Y.
登録日2023-08-15
公開日2024-09-04
実験手法SOLUTION NMR
主引用文献Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET Indicates New Target for Anti-cancer Drug Screening
To Be Published
8CZJ
DownloadVisualize
BU of 8czj by Molmil
A bacteria Zrt/Irt-like protein in the apo state
分子名称: Putative membrane protein, SULFATE ION, [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate
著者Zhang, Y, Hu, J.
登録日2022-05-24
公開日2023-02-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.751 Å)
主引用文献Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter.
Nat Commun, 14, 2023
8AEY
DownloadVisualize
BU of 8aey by Molmil
3 A CRYO-EM STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS FERRITIN FROM TIMEPIX3 detector
分子名称: Ferritin BfrB
著者Zhang, Y, van Schayck, J.P, Knoops, K, Peters, P.J, Ravelli, R.B.G.
登録日2022-07-14
公開日2023-01-18
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Integration of an Event-driven Timepix3 Hybrid Pixel Detector into a Cryo-EM Workflow
Microsc Microanal, 2023
6A9D
DownloadVisualize
BU of 6a9d by Molmil
Crystal structure of the strigolactone receptor ShHTL7 from Striga hermonthica
分子名称: GLYCEROL, Hyposensitive to light 7
著者Zhang, Y.Y, Xi, Z, Wang, D.W.
登録日2018-07-13
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Crystal structure of the strigolactone receptor ShHTL5 from Striga hermonthica
To Be Published
6A37
DownloadVisualize
BU of 6a37 by Molmil
X-ray structure of cyclohexanone monooxygenase from Acinetobacter calcoaceticus
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Putative flavin-binding monooxygenase
著者Zhang, Y, Yu, H.L, Xu, J.H.
登録日2018-06-15
公開日2019-03-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Engineering of Cyclohexanone Monooxygenase for the Enantioselective Synthesis of (S)-Omeprazole
Acs Sustain Chem Eng
8E4V
DownloadVisualize
BU of 8e4v by Molmil
Solution structure of the WH domain of MORF
分子名称: Isoform 3 of Histone acetyltransferase KAT6B
著者Zhang, Y, Kutateladze, T.G.
登録日2022-08-19
公開日2023-05-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献MORF and MOZ acetyltransferases target unmethylated CpG islands through the winged helix domain.
Nat Commun, 14, 2023
5X21
DownloadVisualize
BU of 5x21 by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridimycin (PUM)
分子名称: (1S)-1,4-anhydro-5-[(N-carbamimidoylglycyl-N~2~-hydroxy-L-glutaminyl)amino]-5-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-ribitol, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Zhang, Y, Ebright, R.
登録日2017-01-29
公開日2017-07-05
最終更新日2022-10-12
実験手法X-RAY DIFFRACTION (3.323 Å)
主引用文献Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase.
Cell, 169, 2017
5X22
DownloadVisualize
BU of 5x22 by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Zhang, Y, Ebright, R.
登録日2017-01-29
公開日2017-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase.
Cell, 169, 2017

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon