5XZD

Structure of acryloyl-CoA hydratase AcuH from Roseovarius nubinhibens ISM

Summary for 5XZD

• Entry DOI: 10.2210/pdb5xzd/pdb
• Descriptor: Enoyl-CoA hydratase, ACETIC ACID (3 entities in total)
• Functional Keywords: acryloyl-coa, hydratase, acrylate, lyase
• Biological source: Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM)
• Total number of polymer chains: 6
• Total formula weight: 170326.86

Authors

Zhang, Y.Z.,Wang, P.,Cao, H.Y. (deposition date: 2017-07-12, release date: 2018-07-18, Last modification date: 2023-11-22)

Primary citation

Cao, H.Y.,Wang, P.,Xu, F.,Li, P.Y.,Xie, B.B.,Qin, Q.L.,Zhang, Y.Z.,Li, C.Y.,Chen, X.L.
Molecular Insight into the Acryloyl-CoA Hydration by AcuH for Acrylate Detoxification in Dimethylsulfoniopropionate-Catabolizing Bacteria
Front Microbiol, 8:2034-2034, 2017

PubMed Abstract: Microbial cleavage of dimethylsulfoniopropionate (DMSP) producing dimethyl sulfide (DMS) and acrylate is an important step in global sulfur cycling. Acrylate is toxic for cells, and thus should be metabolized effectively for detoxification. There are two proposed pathways for acrylate metabolism in DMSP-catabolizing bacteria, the AcuN-AcuK pathway and the PrpE-AcuI pathway. AcuH is an acryloyl-CoA hydratase in DMSP-catabolizing bacteria and can catalyze the hydration of toxic acryloyl-CoA to produce 3-hydroxypropionyl-CoA (3-HP-CoA) in both the AcuN-AcuK pathway and the side path of the PrpE-AcuI pathway. However, the structure and catalytic mechanism of AcuH remain unknown. Here, we cloned a putative gene from ISM, a typical DMSP-catabolizing bacterium, and expressed it (AcuH) in . The activity of AcuH toward acryloyl-CoA was detected by liquid chromatography-mass spectrometry (LC-MS), which suggests that AcuH is a functional acryloyl-CoA hydratase. Then we solved the crystal structure of AcuH. Each asymmetric unit in the crystal of AcuH contains a dimer of trimers and each AcuH monomer contains an N-terminal domain (NTD) and a C-terminal domain (CTD). There are three active centers in each trimer and each active center is located between the NTD of a subunit and the CTD of the neighboring subunit. Site-directed mutagenesis analysis indicates that two highly conserved glutamates, Glu112 and Glu132, in the active center are essential for catalysis. Based on our results and previous research, we analyzed the catalytic mechanism of AcuH to hydrate acryloyl-CoA, in which Glu132 acts as the catalytic base. This study sheds light on the mechanism of acrylate detoxification in DMSP-catabolizing bacteria.

PubMed: 29089943
DOI: 10.3389/fmicb.2017.02034

Experimental method

X-RAY DIFFRACTION (1.9 Å)