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PDB: 1007 results

6OZ7
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Putative oxidoreductase from Escherichia coli str. K-12
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, TRIETHYLENE GLYCOL, ...
Authors:Osipiuk, J, Skarina, T, Mesa, N, Endres, M, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-05-15
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Putative oxidoreductase from Escherichia coli str. K-12
to be published
4WZ0
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Crystal structure of U-box 1 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris
Descriptor: E3 ubiquitin-protein ligase LubX
Authors:Stogios, P.J, Quaile, A.T, Skarina, T, Stein, A, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-11-18
Release date:2015-01-14
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
7K3N
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Crystal Structure of NSP1 from SARS-CoV-2
Descriptor: Host translation inhibitor nsp1
Authors:Semper, C, Watanabe, N, Chang, C, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-09-11
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural characterization of nonstructural protein 1 from SARS-CoV-2.
Iscience, 24, 2021
4ZMH
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Crystal structure of a five-domain GH115 alpha-Glucuronidase from the Marine Bacterium Saccharophagus degradans 2-40T
Descriptor: ACETATE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Nocek, B, Cui, H, Wang, W, Savchenko, A.
Deposit date:2015-05-04
Release date:2016-05-04
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Biochemical and Structural Characterization of a Five-domain GH115 alpha-Glucuronidase from the Marine Bacterium Saccharophagus degradans 2-40T.
J.Biol.Chem., 291, 2016
4XUV
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Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris
Descriptor: GLYCEROL, Glycoside hydrolase family 105 protein
Authors:Stogios, P.J, Xu, X, Cui, H, Yim, V, Savchenko, A.
Deposit date:2015-01-26
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.0496 Å)
Cite:Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris
To Be Published
4XUY
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Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger
Descriptor: GLYCEROL, Probable endo-1,4-beta-xylanase C, SULFATE ION
Authors:Stogios, P.J, Dong, A, Xu, X, Cui, H, Savchenko, A.
Deposit date:2015-01-26
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.0027 Å)
Cite:Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger
To Be Published
4WRP
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The C-terminal domain of gene product lpg0944 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Descriptor: Uncharacterized protein
Authors:Cuff, M.E, Evdokimova, E, Egorova, O, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-10-24
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The C-terminal domain of gene product lpg0944 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1.
To Be Published
4ZOS
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2.20 Angstrom resolution crystal structure of protein YE0340 of unidentified function from Yersinia enterocolitica subsp. enterocolitica 8081]
Descriptor: PHOSPHATE ION, protein YE0340 from Yersinia enterocolitica subsp. enterocolitica 8081
Authors:Halavaty, A.S, Wawrzak, A, Onopriyenko, O, Grimshaw, S, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-05-06
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2.20 Angstrom resolution crystal structure of protein YE0340 of unidentified function from Yersinia enterocolitica subsp. enterocolitica 8081]
To Be Published
6CZP
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2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive NAD(P)H-dependent Nitroreductase NfsB from Vibrio vulnificus in Complex with FMN
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ...
Authors:Minasov, G, Wawrzak, Z, Skarina, T, Grimshaw, S, Kwon, K, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-09
Release date:2018-04-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive NAD(P)H-dependent Nitroreductase NfsB from Vibrio vulnificus in Complex with FMN.
To Be Published
4XCW
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Crystal structure of molybdenum cofactor biosynthesis protein MogA from Helicobacter pylori str. J99
Descriptor: Molybdopterin adenylyltransferase
Authors:Stogios, P.J, Onopriyenko, O, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-12-18
Release date:2015-02-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:To be published
To Be Published
5CYV
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Crystal structure of CouR from Rhodococcus jostii RHA1 bound to p-coumaroyl-CoA
Descriptor: ACETATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Stogios, P.J, Xu, X, Dong, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-07-30
Release date:2015-08-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism.
Nucleic Acids Res., 44, 2016
6AOK
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Crystal structure of Legionella pneumophila effector Ceg4 with N-terminal TEV protease cleavage sequence
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Ceg4, ...
Authors:Stogios, P.J, Cuff, M.E, Nocek, B, Evdokimova, E, Egorova, O, Yim, V, Di Leo, R, Savchenko, A.
Deposit date:2017-08-16
Release date:2018-01-10
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:TheLegionella pneumophilaeffector Ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic MAPK pathways.
J. Biol. Chem., 293, 2018
5D9M
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Crystal structure of PbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14, E280A mutant in complex with the xyloglucan tetradecasaccharide XXXGXXXG
Descriptor: B-1,4-endoglucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Morar, M, Stogios, P.J, Xu, X, Cui, H, Di Leo, R, Yim, V, Savchenko, A.
Deposit date:2015-08-18
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B14.
J.Biol.Chem., 291, 2016
6BNC
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BU of 6bnc by Molmil
Crystal structure of the intrinsic colistin resistance enzyme ICR(Mc) from Moraxella catarrhalis, catalytic domain, Thr315Ala mutant di-zinc and PEG complex
Descriptor: CHLORIDE ION, POLYETHYLENE GLYCOL (N=34), Phosphoethanolamine transferase, ...
Authors:Stogios, P.J, Evdokimova, E, Wawrzak, Z, Savchenko, A, Anderson, W.F, Satchell, K.J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-11-16
Release date:2018-01-31
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition by a Colistin Resistance Enzyme from Moraxella catarrhalis.
ACS Chem. Biol., 13, 2018
5D8M
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Crystal structure of the metagenomic carboxyl esterase MGS0156
Descriptor: Metagenomic carboxyl esterase MGS0156
Authors:Cui, H, Nocek, B, Tchigvintsev, A, Popovic, A, Savchenko, A, Joachimiak, A, Yakunin, A.
Deposit date:2015-08-17
Release date:2016-10-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of esterase (MGS0156)
To Be Published
6CD7
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Crystal structure of APH(2")-IVa in complex with plazomicin
Descriptor: (2S)-4-amino-N-[(1R,2S,3S,4R,5S)-5-amino-4-{[(2S,3R)-3-amino-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-y l]oxy}-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-2-hydroxybutanamide, APH(2'')-Id, CHLORIDE ION
Authors:Stogios, P.J, Evdokimova, E, Dong, A, Di Leo, R, Savchenko, A, Satchell, K.J, Joachimiak, J, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-02-08
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Plazomicin Retains Antibiotic Activity against Most Aminoglycoside Modifying Enzymes.
ACS Infect Dis, 4, 2018
5DGG
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Central domain of uncharacterized Lpg1148 protein from Legionella pneumophila
Descriptor: CHLORIDE ION, Uncharacterized protein
Authors:Osipiuk, J, Evdokimova, E, Yim, V, Joachimiak, A, Ensminger, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-08-27
Release date:2015-09-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila.
Mol. Syst. Biol., 12, 2016
6BNF
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BU of 6bnf by Molmil
Crystal structure of the intrinsic colistin resistance enzyme ICR(Mc) from Moraxella catarrhalis, catalytic domain, mono-zinc complex
Descriptor: ACETATE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Stogios, P.J, Evdokimova, E, Wawrzak, Z, Di Leo, R, Savchenko, A, Anderson, W.F, Satchell, K.J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-11-16
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Substrate recognition by a colistin resistance enzyme from Moraxella catarrhalis.
ACS Chem. Biol., 2018
6BRD
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BU of 6brd by Molmil
Crystal structure of rifampin monooxygenase from Streptomyces venezuelae, complexed with rifampin and FAD
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Cox, G, Kelso, J, Stogios, P.J, Savchenko, A, Anderson, W.F, Wright, G.D, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-11-30
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Rox, a Rifamycin Resistance Enzyme with an Unprecedented Mechanism of Action.
Cell Chem Biol, 25, 2018
6AOJ
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BU of 6aoj by Molmil
Crystal structure of Legionella pneumophila effector Ceg4 with N-terminal yeast Hog1p sequence
Descriptor: CHLORIDE ION, Ceg4, MAGNESIUM ION
Authors:Stogios, P.J, Nocek, B, Cuff, M.E, Evdokimova, E, Egorova, O, Yim, V, Di Leo, R, Savchenko, A.
Deposit date:2017-08-16
Release date:2018-01-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:TheLegionella pneumophilaeffector Ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic MAPK pathways.
J. Biol. Chem., 293, 2018
2QH1
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BU of 2qh1 by Molmil
Structure of TA289, a CBS-rubredoxin-like protein, in its Fe+2-bound state
Descriptor: FE (II) ION, Hypothetical protein Ta0289
Authors:Singer, A.U, Proudfoot, M, Brown, G, Xu, L, Savchenko, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-06-29
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.
J.Mol.Biol., 375, 2008
5BY0
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BU of 5by0 by Molmil
Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
Descriptor: MAGNESIUM ION, Protein-glutamate O-methyltransferase
Authors:Nocek, B, Cuff, M, Cui, H, Xu, X, Savchenko, A, Joachimiak, A, Yakunin, A.
Deposit date:2015-06-09
Release date:2015-07-29
Last modified:2015-10-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
To Be Published
5CBK
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Crystal structure of the strigolactone receptor ShHTL5 from Striga hermonthica
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Stogios, P.J, Onopriyenko, O, Yim, V, Savchenko, A.
Deposit date:2015-07-01
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.462 Å)
Cite:Structure-function analysis identifies highly sensitive strigolactone receptors in Striga.
Science, 350, 2015
5CZJ
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Crystal structure of HypD, a 1-pyrroline-4-hydroxy-2-carboxylate deaminase from Sinorhizobium meliloti
Descriptor: Dihydrodipicolinate synthase
Authors:Stogios, P.J, Xu, X, Savchenko, A.
Deposit date:2015-07-31
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:l-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.
J.Bacteriol., 198, 2016
5D9P
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Crystal structure of PbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14, in complex with an inhibitory N-bromoacetylglycosylamine derivative of XXXG
Descriptor: B-1,4-endoglucanase, CALCIUM ION, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-N-acetyl-beta-D-glucopyranosylamine
Authors:Morar, M, Stogios, P.J, Xu, X, Cui, H, Di Leo, R, Yim, V, Savchenko, A.
Deposit date:2015-08-18
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B14.
J.Biol.Chem., 291, 2016

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