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PDB: 63 results

8JKB
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BU of 8jkb by Molmil
Cryo-EM structure of KCTD5 in complex with Gbeta gamma subunits
Descriptor: BTB/POZ domain-containing protein KCTD5, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Authors:Zheng, S, Jiang, W, Wang, W, Kong, Y.
Deposit date:2023-06-01
Release date:2023-07-26
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural basis for the ubiquitination of G protein beta gamma subunits by KCTD5/Cullin3 E3 ligase.
Sci Adv, 9, 2023
5Z8O
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BU of 5z8o by Molmil
Structural of START superfamily protein MSMEG_0129 from Mycobacterium smegmatis
Descriptor: Cyclase/dehydrase
Authors:Zheng, S, Liu, W, Bi, L.
Deposit date:2018-01-31
Release date:2018-03-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and genetic analysis of START superfamily protein MSMEG_0129 from Mycobacterium smegmatis.
FEBS Lett., 592, 2018
8CY8
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BU of 8cy8 by Molmil
apo form Cryo-EM structure of Campylobacter jejune ketol-acid reductoisommerase crosslinked by Glutaraldehyde
Descriptor: Ketol-acid reductoisomerase (NADP(+)), PENTANEDIAL
Authors:Zheng, S, Guddat, L.W.
Deposit date:2022-05-23
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Enhancing the Thermal and Kinetic Stability of Ketol-Acid Reductoisomerase, a Central Catalyst of a Cell-Free Enzyme Cascade for the Manufacture of Platform Chemicals
Appl Biosci, 2022
5Z1G
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BU of 5z1g by Molmil
Structure of the Brx1 and Ebp2 complex
Descriptor: Ribosome biogenesis protein BRX1, SULFATE ION, rRNA-processing protein EBP2
Authors:Zheng, S, Ye, K.
Deposit date:2017-12-26
Release date:2018-04-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Protein Cell, 10, 2019
6CC4
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BU of 6cc4 by Molmil
Structure of MurJ from Escherichia coli
Descriptor: PHOSPHATE ION, soluble cytochrome b562, lipid II flippase MurJ chimera
Authors:Zheng, S, Kruse, A.C.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and mutagenic analysis of the lipid II flippase MurJ fromEscherichia coli.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4QMF
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BU of 4qmf by Molmil
Structure of the Krr1 and Faf1 complex from Saccharomyces cerevisiae
Descriptor: KRR1 small subunit processome component, Protein FAF1
Authors:Zheng, S, Ye, K.
Deposit date:2014-06-16
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
J.Biol.Chem., 289, 2014
4RKG
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BU of 4rkg by Molmil
Structure of the MSL2 CXC domain bound with a non-specific (GC)6 DNA
Descriptor: DNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), E3 ubiquitin-protein ligase msl-2, ZINC ION
Authors:Zheng, S, Ye, K.
Deposit date:2014-10-13
Release date:2015-01-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.
Genes Dev., 28, 2014
4RKH
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BU of 4rkh by Molmil
Structure of the MSL2 CXC domain bound with a specific MRE sequence
Descriptor: DNA (5'-D(*AP*TP*CP*CP*AP*TP*CP*TP*CP*GP*CP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*AP*GP*CP*GP*AP*GP*AP*TP*GP*GP*AP*T)-3'), E3 ubiquitin-protein ligase msl-2, ...
Authors:Zheng, S, Ye, K.
Deposit date:2014-10-13
Release date:2015-01-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.
Genes Dev., 28, 2014
2KE0
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BU of 2ke0 by Molmil
Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei
Descriptor: Peptidyl-prolyl cis-trans isomerase
Authors:Zheng, S, Leeper, T, Napuli, A, Nakazawa, S.H, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-01-21
Release date:2009-03-03
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The structure of a Burkholderia pseudomallei immunophilin-inhibitor complex reveals new approaches to antimicrobial development.
Biochem.J., 437, 2011
2KGP
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BU of 2kgp by Molmil
Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by Novantrone (Mitoxantrone)
Descriptor: 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE, RNA (25-MER)
Authors:Zheng, S, Chen, Y, Donahue, C.P, Wolfe, M.S, Varani, G.
Deposit date:2009-03-13
Release date:2009-06-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by novantrone (mitoxantrone).
Chem.Biol., 16, 2009
2KO7
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BU of 2ko7 by Molmil
Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with Cycloheximide-N-ethylethanoate
Descriptor: Peptidyl-prolyl cis-trans isomerase, ethyl (4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}-2,6-dioxopiperidin-1-yl)acetate
Authors:Zheng, S, Leeper, T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-09-11
Release date:2009-09-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The structure of a Burkholderia pseudomallei immunophilin-inhibitor complex reveals new approaches to antimicrobial development.
Biochem.J., 437, 2011
2L2S
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BU of 2l2s by Molmil
Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine
Descriptor: 1-{[(4-methylphenyl)sulfanyl]acetyl}piperidine, Peptidyl-prolyl cis-trans isomerase
Authors:Zheng, S, Barnwal, R, Leeper, T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2010-08-27
Release date:2010-09-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine
To be Published
2KHP
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BU of 2khp by Molmil
Solution structure of Glutaredoxin from Brucella melitensis
Descriptor: GLUTAREDOXIN
Authors:Zheng, S, Leeper, T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-04-10
Release date:2009-05-05
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Comparative analysis of glutaredoxin domains from bacterial opportunistic pathogens.
Acta Crystallogr.,Sect.F, 67, 2011
6M8S
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BU of 6m8s by Molmil
Crystal structure of the KCTD12 H1 domain in complex with Gbeta1gamma2 subunits
Descriptor: BTB/POZ domain-containing protein KCTD12, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Authors:Zheng, S, Kruse, A.C.
Deposit date:2018-08-22
Release date:2019-02-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:Structural basis for KCTD-mediated rapid desensitization of GABABsignalling.
Nature, 567, 2019
6M8R
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BU of 6m8r by Molmil
Crystal structure of the KCTD16 BTB domain in complex with GABAB2 peptide
Descriptor: BTB/POZ domain-containing protein KCTD16, Gamma-aminobutyric acid type B receptor subunit 2, MAGNESIUM ION
Authors:Zheng, S, Kruse, A.C.
Deposit date:2018-08-22
Release date:2019-02-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for KCTD-mediated rapid desensitization of GABABsignalling.
Nature, 567, 2019
7E7D
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BU of 7e7d by Molmil
Cryo-EM structure of the SARS-CoV-2 wild-type S-Trimer from a subunit vaccine candidate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-OCTADECENOIC ACID, ...
Authors:Zheng, S, Ma, J.
Deposit date:2021-02-25
Release date:2021-03-24
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19.
J.Virol., 95, 2021
7E7B
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BU of 7e7b by Molmil
Cryo-EM structure of the SARS-CoV-2 furin site mutant S-Trimer from a subunit vaccine candidate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside, ...
Authors:Zheng, S, Ma, J.
Deposit date:2021-02-25
Release date:2021-03-24
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19.
J.Virol., 95, 2021
5WXL
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BU of 5wxl by Molmil
Crystal structure of the Rrs1 and Rpf2 complex
Descriptor: Regulator of ribosome biosynthesis, Ribosome biogenesis protein RPF2
Authors:Ye, K, Zheng, S.
Deposit date:2017-01-07
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
6U66
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BU of 6u66 by Molmil
Structure of the trimeric globular domain of Adiponectin
Descriptor: Adiponectin, CALCIUM ION, SODIUM ION
Authors:Pascolutti, R, Kruse, A.C, Erlandson, S.C, Burri, D.J, Zheng, S.
Deposit date:2019-08-29
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Mapping and engineering the interaction between adiponectin and T-cadherin.
J.Biol.Chem., 295, 2020
6U6N
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BU of 6u6n by Molmil
Structure of the trimeric globular domain of Adiponectin mutant - D187A Q188A
Descriptor: Adiponectin, CHLORIDE ION
Authors:Pascolutti, R, Kruse, A.C, Erlandson, S.C, Burri, D.J, Zheng, S.
Deposit date:2019-08-30
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mapping and engineering the interaction between adiponectin and T-cadherin.
J.Biol.Chem., 295, 2020
7XJJ
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BU of 7xjj by Molmil
Cryo-EM structure of the galanin-bound GALR1-miniGo complex
Descriptor: G protein subunit alpha o1,Guanine nucleotide-binding protein G(o) subunit alpha, Galanin, Galanin receptor type 1, ...
Authors:Jiang, W, Zheng, S.
Deposit date:2022-04-18
Release date:2023-05-03
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into galanin receptor signaling.
Proc.Natl.Acad.Sci.USA, 119, 2022
8J7Q
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BU of 8j7q by Molmil
The active site mutant of human inorganic pyrophosphatase
Descriptor: Inorganic pyrophosphatase
Authors:Hu, F, Zheng, S.
Deposit date:2023-04-28
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:The active site mutant of human inorganic pyrophosphatase
To Be Published
6PL5
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BU of 6pl5 by Molmil
Structural coordination of polymerization and crosslinking by a peptidoglycan synthase complex
Descriptor: Penicillin-binding protein 2/cell division protein FtsI, Peptidoglycan glycosyltransferase RodA, Unknown peptide
Authors:Sjodt, M, Rohs, P.D.A, Erlandson, S.C, Zheng, S, Rudner, D.Z, Bernhardt, T.G, Kruse, A.C.
Deposit date:2019-06-30
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex.
Nat Microbiol, 5, 2020
6PL6
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BU of 6pl6 by Molmil
Structural coordination of polymerization and crosslinking by a peptidoglycan synthase complex
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 2/cell division protein FtsI, Peptidoglycan glycosyltransferase RodA, ...
Authors:Sjodt, M, Rohs, P.D.A, Erlandson, S.C, Zheng, S, Rudner, D.Z, Bernhardt, T.G, Kruse, A.C.
Deposit date:2019-06-30
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex.
Nat Microbiol, 5, 2020
8KH5
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BU of 8kh5 by Molmil
Cryo-EM structure of the GPR174-Gs complex bound to endogenous lysoPS
Descriptor: CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Nie, Y, Qiu, Z, Zheng, S, Chen, S.
Deposit date:2023-08-21
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Specific binding of GPR174 by endogenous lysophosphatidylserine leads to high constitutive G s signaling.
Nat Commun, 14, 2023

 

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PDB entries from 2024-07-03

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