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PDB: 727 件

4MW0
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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-(2-hydroxyphenyl)urea (Chem 1392)
分子名称: 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-(2-hydroxyphenyl)urea, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Koh, C.Y, Kim, J.E, Wetzel, A.B, de van der Schueren, W.J, Shibata, S, Liu, J, Zhang, Z, Fan, E, Verlinde, C.L.M.J, Hol, W.G.J.
登録日2013-09-24
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Structures of Trypanosoma brucei Methionyl-tRNA Synthetase with Urea-Based Inhibitors Provide Guidance for Drug Design against Sleeping Sickness.
Plos Negl Trop Dis, 8, 2014
4MW6
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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-(3-{[2-(benzyloxy)-5-chloro-3-(prop-2-en-1-yl)benzyl]amino}propyl)-3-thiophen-3-ylurea (Chem 1476)
分子名称: 1-(3-{[2-(benzyloxy)-5-chloro-3-(prop-2-en-1-yl)benzyl]amino}propyl)-3-thiophen-3-ylurea, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Koh, C.Y, Kim, J.E, Wetzel, A.B, de van der Schueren, W.J, Shibata, S, Liu, J, Zhang, Z, Fan, E, Verlinde, C.L.M.J, Hol, W.G.J.
登録日2013-09-24
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.558 Å)
主引用文献Structures of Trypanosoma brucei Methionyl-tRNA Synthetase with Urea-Based Inhibitors Provide Guidance for Drug Design against Sleeping Sickness.
Plos Negl Trop Dis, 8, 2014
4MW5
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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea (Chem 1415)
分子名称: 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Koh, C.Y, Kim, J.E, Wetzel, A.B, de van der Schueren, W.J, Shibata, S, Liu, J, Zhang, Z, Fan, E, Verlinde, C.L.M.J, Hol, W.G.J.
登録日2013-09-24
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.347 Å)
主引用文献Structures of Trypanosoma brucei Methionyl-tRNA Synthetase with Urea-Based Inhibitors Provide Guidance for Drug Design against Sleeping Sickness.
Plos Negl Trop Dis, 8, 2014
5XQ1
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BU of 5xq1 by Molmil
Structural basis of kindlin-mediated integrin recognition and activation
分子名称: Fermitin family homolog 2,Integrin beta-3
著者Li, H, Yang, H, Sun, K, Zhang, Z, Yu, C, Wei, Z.
登録日2017-06-05
公開日2017-07-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.954 Å)
主引用文献Structural basis of kindlin-mediated integrin recognition and activation
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8A5Y
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S. cerevisiae apo unphosphorylated APC/C.
分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
著者Barford, D, Fernandez-Vazquez, E, Zhang, Z, Yang, J.
登録日2022-06-16
公開日2022-08-31
最終更新日2023-07-26
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex and comparison to apo unphosphorylated and phosphorylated states
To Be Published
8A61
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S. cerevisiae apo phosphorylated APC/C
分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
著者Barford, D, Fernandez-Vazquez, E, Zhang, Z, Yang, J.
登録日2022-06-16
公開日2022-08-31
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Cryo-EM structure of the S. cerevisiae apo phosphorylated APC/C
To Be Published
8A3T
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S. cerevisiae APC/C-Cdh1 complex
分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
著者Barford, D, Vazquez-Fernandez, E, Zhang, Z, Yang, J.
登録日2022-06-09
公開日2022-08-31
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex
To Be Published
5XQ0
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Structural basis of kindlin-mediated integrin recognition and activation
分子名称: Fermitin family homolog 2,Integrin beta-1, GLYCEROL
著者Li, H, Yang, H, Sun, K, Zhang, Z, Yu, C, Wei, Z.
登録日2017-06-05
公開日2017-07-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural basis of kindlin-mediated integrin recognition and activation
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7ON1
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BU of 7on1 by Molmil
Cenp-A nucleosome in complex with Cenp-C
分子名称: BJ4_G0006610.mRNA.1.CDS.1, BJ4_G0007000.mRNA.1.CDS.1, DNA (123-MER), ...
著者Yan, K, Yang, J, Zhang, Z, Barford, D.
登録日2021-05-25
公開日2021-07-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Cenp-A nucleosome in complex with Cenp-C
To Be Published
7U5H
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BU of 7u5h by Molmil
Cryo-EM Structure of DNPEP
分子名称: Aspartyl aminopeptidase, ZINC ION
著者Morgan, C.E, Yu, E.W, Zhang, Z.
登録日2022-03-02
公開日2022-12-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Toward structural-omics of the bovine retinal pigment epithelium.
Cell Rep, 41, 2022
7U5L
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BU of 7u5l by Molmil
Cryo-EM Structure of Ferritin
分子名称: FE (III) ION, Ferritin heavy chain
著者Morgan, C.E, Zhang, Z, Yu, E.W.
登録日2022-03-02
公開日2022-12-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Toward structural-omics of the bovine retinal pigment epithelium.
Cell Rep, 41, 2022
1AQC
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BU of 1aqc by Molmil
X11 PTB DOMAIN-10MER PEPTIDE COMPLEX
分子名称: PEPTIDE, X11
著者Lee, C.-H, Zhang, Z, Kuriyan, J.
登録日1997-07-28
公開日1997-12-24
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Sequence-specific recognition of the internalization motif of the Alzheimer's amyloid precursor protein by the X11 PTB domain.
EMBO J., 16, 1997
5XPZ
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BU of 5xpz by Molmil
Structural basis of kindlin-mediated integrin recognition and activation
分子名称: Fermitin family homolog 2, GLYCEROL
著者Li, H, Yang, H, Sun, K, Zhang, Z, Yu, C, Wei, Z.
登録日2017-06-05
公開日2017-07-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Structural basis of kindlin-mediated integrin recognition and activation
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XPY
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BU of 5xpy by Molmil
Structural basis of kindlin-mediated integrin recognition and activation
分子名称: ACETATE ION, Fermitin family homolog 2, GLYCEROL
著者Li, H, Yang, H, Sun, K, Zhang, Z, Yu, C, Wei, Z.
登録日2017-06-05
公開日2017-07-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Structural basis of kindlin-mediated integrin recognition and activation
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5Z09
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BU of 5z09 by Molmil
ST0452(Y97N)-UTP binding form
分子名称: Dual sugar-1-phosphate nucleotidylyltransferase, URIDINE 5'-TRIPHOSPHATE
著者Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y.
登録日2017-12-19
公開日2018-10-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering
Appl. Environ. Microbiol., 84, 2018
5Z0A
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BU of 5z0a by Molmil
ST0452(Y97N)-GlcNAc binding form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dual sugar-1-phosphate nucleotidylyltransferase
著者Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y.
登録日2017-12-19
公開日2018-10-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering
Appl. Environ. Microbiol., 84, 2018
5ZMN
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BU of 5zmn by Molmil
Sulfur binding domain and SRA domain of ScoMcrA complexed with phosphorothioated DNA
分子名称: DNA (5'-D(*CP*CP*CP*GP*(GS)P*CP*CP*GP*GP*G)-3'), SULFATE ION, Uncharacterized protein McrA
著者Liu, G, Fu, W, Zhang, Z, He, Y, Yu, H, Zhao, Y, Deng, Z, Wu, G, He, X.
登録日2018-04-04
公開日2018-09-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Structural basis for the recognition of sulfur in phosphorothioated DNA.
Nat Commun, 9, 2018
5W3T
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BU of 5w3t by Molmil
Crystal structure of PopP2 in complex with IP6
分子名称: GLYCEROL, INOSITOL HEXAKISPHOSPHATE, PopP2 protein
著者Song, J, Zhang, Z.M.
登録日2017-06-08
公開日2017-08-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mechanism of host substrate acetylation by a YopJ family effector.
Nat Plants, 3, 2017
6KZD
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BU of 6kzd by Molmil
Crystal structure of TRKc in complex with 3-((6-(4-aminophenyl)imidazo[1,2-a]pyrazin-3-yl)ethynyl)- N-(3-isopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-2- methylbenzamide
分子名称: 3-[2-[6-(4-aminophenyl)imidazo[1,2-a]pyrazin-3-yl]ethynyl]-2-methyl-~{N}-[3-(4-methylpiperazin-1-yl)-5-propan-2-yl-phenyl]benzamide, NT-3 growth factor receptor, PHOSPHATE ION
著者Wang, Y, Zhang, Z.M.
登録日2019-09-23
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.708 Å)
主引用文献Design, synthesis and biological evaluation of 3-(imidazo[1,2-a]pyrazin-3-ylethynyl)-2-methylbenzamides as potent and selective pan-tropomyosin receptor kinase (TRK) inhibitors.
Eur.J.Med.Chem., 179, 2019
6LYH
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BU of 6lyh by Molmil
Crystal structure of tea N9-methyltransferase CkTcS in complex with SAH and 1,3,7-trimethyluric acid
分子名称: 1,3,7-trimethyl-9H-purine-2,6,8-trione, N-methyltransferase CkTcS, S-ADENOSYL-L-HOMOCYSTEINE
著者Wang, Y, Zhang, Z.-M.
登録日2020-02-14
公開日2020-03-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.15000319 Å)
主引用文献Identification and characterization of N9-methyltransferase involved in converting caffeine into non-stimulatory theacrine in tea.
Nat Commun, 11, 2020
5GJB
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BU of 5gjb by Molmil
Zika virus NS3 helicase in complex with ssRNA
分子名称: NS3 helicase, RNA (5'-R(*AP*GP*AP*UP*CP*AP*A)-3')
著者Tian, H.L, Ji, X.Y, Yang, X.Y, Zhang, Z.X, Lu, Z.K, Yang, K.L, Chen, C, Zhao, Q, Chi, H, Mu, Z.Y, Xie, W, Wang, Z.F, Lou, H.Q, Yang, H.T, Rao, Z.H.
登録日2016-06-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell, 7, 2016
8XV9
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BU of 8xv9 by Molmil
Fedratinib-bound human SLC19A3
分子名称: N-tert-butyl-3-{[5-methyl-2-({4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]amino}benzenesulfonamide, Soluble cytochrome b562,Thiamine transporter 2
著者Dang, Y, Wang, G.P, Zhang, Z.
登録日2024-01-14
公開日2024-03-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
8XV2
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BU of 8xv2 by Molmil
Thiamine-bound human SLC19A3
分子名称: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, Soluble cytochrome b562,Thiamine transporter 2
著者Dang, Y, Wang, G.P, Zhang, Z.
登録日2024-01-14
公開日2024-03-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
8XV5
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Pyridoxamine-bound human SLC19A3
分子名称: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Soluble cytochrome b562,Thiamine transporter 2
著者Dang, Y, Wang, G.P, Zhang, Z.
登録日2024-01-14
公開日2024-03-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
8GS9
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SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551
分子名称: Heavy chain of VacBB-551, Light chain of VacBB-551, Spike glycoprotein
著者Liu, C.C, Ju, B, Shen, S.L, Zhang, Z.
登録日2022-09-05
公開日2023-05-03
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (2.66 Å)
主引用文献Omicron BQ.1.1 and XBB.1 unprecedentedly escape broadly neutralizing antibodies elicited by prototype vaccination.
Cell Rep, 42, 2023

224004

件を2024-08-21に公開中

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