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PDB: 382 results

8HPL
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BU of 8hpl by Molmil
LpqY-SugABC in state 1
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liang, J, Yang, X, Zhang, B, Rao, Z, Liu, F.
Deposit date:2022-12-12
Release date:2023-09-06
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (4.29 Å)
Cite:Structural insights into trehalose capture and translocation by mycobacterial LpqY-SugABC.
Structure, 31, 2023
8HPN
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BU of 8hpn by Molmil
LpqY-SugABC in state 3
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liang, J, Yang, X, Zhang, B, Rao, Z, Liu, F.
Deposit date:2022-12-12
Release date:2023-09-06
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:Structural insights into trehalose capture and translocation by mycobacterial LpqY-SugABC.
Structure, 31, 2023
8HPS
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BU of 8hps by Molmil
LpqY-SugABC in state 5
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liang, J, Yang, X, Zhang, B, Rao, Z, Liu, F.
Deposit date:2022-12-12
Release date:2023-09-06
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Structural insights into trehalose capture and translocation by mycobacterial LpqY-SugABC.
Structure, 31, 2023
5GZS
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BU of 5gzs by Molmil
Structure of VC protein
Descriptor: ARGININE, GGDEF family protein
Authors:Xu, M, Wang, Y.Z, Yang, X.A, Xie, W, Jiang, T.
Deposit date:2016-10-01
Release date:2017-08-16
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structural studies of the periplasmic portion of the diguanylate cyclase CdgH from Vibrio cholerae.
Sci Rep, 7, 2017
2ZKS
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BU of 2zks by Molmil
Structural insights into the proteolytic machinery of apoptosis-inducing Granzyme M
Descriptor: Granzyme M, SULFATE ION, hGzmM inhibitor
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Yang, X, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-03-28
Release date:2009-03-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
5B6G
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BU of 5b6g by Molmil
Protein-protein interaction
Descriptor: Adenomatous polyposis coli protein, GLYCEROL, PHQ-ALA-GLY-GLU-ALA-XYC-TYR-GLU, ...
Authors:Zhao, Y, Jiang, H, Yang, X, Jiang, F, Song, K, Zhang, J.
Deposit date:2016-05-27
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Peptidomimetic inhibitors of APC-Asef interaction block colorectal cancer migration.
Nat. Chem. Biol., 13, 2017
1RIQ
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BU of 1riq by Molmil
The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase
Descriptor: Alanyl-tRNA synthetase
Authors:Swairjo, M.A, Otero, F.J, Yang, X.-L, Lovato, M.A, Skene, R.J, McRee, D.E, Ribas de Pouplana, L, Schimmel, P.
Deposit date:2003-11-17
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Alanyl-tRNA Synthetase Crystal Structure and Design for Acceptor-Stem Recognition
Mol.Cell, 13, 2004
1RXQ
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BU of 1rxq by Molmil
YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology
Descriptor: ALANINE, GLUTAMIC ACID, GLYCINE, ...
Authors:Rajan, S.S, Yang, X, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2003-12-18
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:YfiT from Bacillus subtilis Is a Probable Metal-Dependent Hydrolase with an Unusual Four-Helix Bundle Topology
Biochemistry, 43, 2004
4L87
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BU of 4l87 by Molmil
Crystal structure of the human seryl-tRNA synthetase in complex with Ser-SA at 2.9 Angstrom resolution
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Xu, X, Yang, X.-L.
Deposit date:2013-06-16
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.897 Å)
Cite:Crystal Structure of Human Seryl-tRNA Synthetase and Ser-SA Complex Reveals a Molecular Lever Specific to Higher Eukaryotes.
Structure, 21, 2013
3G98
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BU of 3g98 by Molmil
Crystal Structure of the C-Ala domain from Aquifex aeolicus alanyl-tRNA synthetase
Descriptor: Alanyl-tRNA synthetase
Authors:Guo, M, Yang, X.L, Schimmel, P.
Deposit date:2009-02-13
Release date:2009-10-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The C-Ala domain brings together editing and aminoacylation functions on one tRNA.
Science, 325, 2009
4RYL
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BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
4O4S
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BU of 4o4s by Molmil
Crystal structure of phycobiliprotein lyase CpcT complexed with phycocyanobilin (PCB)
Descriptor: PHYCOCYANOBILIN, Phycocyanobilin lyase CpcT
Authors:Zhou, W, Ding, W.-L, Zeng, X.-l, Dong, L.-L, Zhao, B, Zhou, M, Scheer, H, Zhao, K.-H, Yang, X.
Deposit date:2013-12-19
Release date:2014-08-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mechanism of the Phycobiliprotein Lyase CpcT.
J.Biol.Chem., 289, 2014
4O4O
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BU of 4o4o by Molmil
Crystal structure of phycobiliprotein lyase CpcT
Descriptor: MAGNESIUM ION, Phycocyanobilin lyase CpcT
Authors:Zhou, W, Ding, W.-L, Zeng, X.-l, Dong, L.-L, Zhao, B, Zhou, M, Scheer, H, Zhao, K.-H, Yang, X.
Deposit date:2013-12-19
Release date:2014-08-06
Last modified:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and Mechanism of the Phycobiliprotein Lyase CpcT.
J.Biol.Chem., 289, 2014
8HPR
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BU of 8hpr by Molmil
LpqY-SugABC in state 4
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liang, J, Yang, X, Zhang, B, Rao, Z, Liu, F.
Deposit date:2022-12-12
Release date:2023-09-06
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structural insights into trehalose capture and translocation by mycobacterial LpqY-SugABC.
Structure, 31, 2023
5THL
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BU of 5thl by Molmil
Crystal structure of the human tyrosyl-tRNA synthetase mutant G41R
Descriptor: Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Sajish, M, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
5THH
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BU of 5thh by Molmil
Crystal structure of a human tyrosyl-tRNA synthetase mutant
Descriptor: TYROSINE, Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-05-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.959 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
8FFI
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BU of 8ffi by Molmil
Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2022-12-08
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8FEX
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BU of 8fex by Molmil
Inactivate state of Maribacter polysiphoniae Argonuate (short pAgo system)
Descriptor: TIR-APAZ, short pAgo
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2022-12-06
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
4K79
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BU of 4k79 by Molmil
Recognition of the Thomsen-Friedenreich Antigen by a Lamprey Variable Lymphocyte Receptor
Descriptor: Variable lymphocyte receptor, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Luo, M, Velikovsky, C.A, Yang, X.B, Mariuzza, R.A.
Deposit date:2013-04-16
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Recognition of the thomsen-friedenreich pancarcinoma carbohydrate antigen by a lamprey variable lymphocyte receptor.
J.Biol.Chem., 288, 2013
4K5U
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BU of 4k5u by Molmil
Recognition of the BG-H Antigen by a Lamprey Variable Lymphocyte Receptor
Descriptor: Variable lymphocyte receptor, beta-D-galactopyranose
Authors:Luo, M, Velikovsky, C.A, Yang, X.B, Mariuzza, R.A.
Deposit date:2013-04-15
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Recognition of the thomsen-friedenreich pancarcinoma carbohydrate antigen by a lamprey variable lymphocyte receptor.
J.Biol.Chem., 288, 2013
1K8L
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BU of 1k8l by Molmil
XBY6: An analog of CK14 containing 6 dithiophosphate groups
Descriptor: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
Authors:Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
Deposit date:2001-10-24
Release date:2003-04-15
Last modified:2022-06-22
Method:SOLUTION NMR
Cite:Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
1K8J
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BU of 1k8j by Molmil
NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1
Descriptor: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
Authors:Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
Deposit date:2001-10-24
Release date:2003-04-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
1K8N
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BU of 1k8n by Molmil
NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24
Descriptor: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
Authors:Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
Deposit date:2001-10-24
Release date:2003-04-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
3Q5M
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BU of 3q5m by Molmil
Crystal structure of Escherichia coli BamD
Descriptor: IODIDE ION, UPF0169 lipoprotein yfiO
Authors:Dong, C, Hou, H, Yang, X, Dong, Y, Shen, Y.
Deposit date:2010-12-28
Release date:2011-12-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Structure of Escherichia coli BamD and its functional implications in outer membrane protein assembly
Acta Crystallogr.,Sect.D, 68, 2012
5D2N
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BU of 5d2n by Molmil
Crystal structure of C25-NLV-HLA-A2 complex
Descriptor: ASN-LEU-VAL-PRO-MET-VAL-ALA-THR-VAL, Beta-2-microglobulin, C25 alpha, ...
Authors:Mariuzza, R.A, Yang, X.
Deposit date:2015-08-05
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Structural Basis for Clonal Diversity of the Public T Cell Response to a Dominant Human Cytomegalovirus Epitope.
J.Biol.Chem., 290, 2015

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