5D2N

Crystal structure of C25-NLV-HLA-A2 complex

Summary for 5D2N

Related5D2L
DescriptorC25 alpha, C25 beta, HLA class I histocompatibility antigen, A-2 alpha chain, ... (7 entities in total)
Functional Keywordstcr, nlv, hla-a2, immune system
Biological sourceHomo sapiens (Human)
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Total number of polymer chains10
Total molecular weight190862.94
Authors
Mariuzza, R.A.,Yang, X. (deposition date: 2015-08-05, release date: 2015-10-07, Last modification date: 2019-05-08)
Primary citation
Yang, X.,Gao, M.,Chen, G.,Pierce, B.G.,Lu, G.,Weng, N.-P.,Mariuzza, R.A.
Crystal structure of TCR C7 in complex with HCMV NLV epitope presented by HLA-A2
J.Biol.Chem., 2015
DOI: 10.1074/jbc.M115.691311
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.099 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.25410 0.2% 2.5% 1.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5d2n
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Molmil generated image of 5d2n
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Molmil generated image of 5d2n
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More Biological unit images

Molmil generated image of 5d2n
no rotation
Molmil generated image of 5d2n
rotated about x axis by 90°
Molmil generated image of 5d2n
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5d2n.pdb2.gz [145.61 KB])
Coordinate files for Biological unit (5d2n.pdb1.gz [145.26 KB])