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PDB: 28 results

3GS3
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BU of 3gs3 by Molmil
Structure of the N-terminal HEAT Domain of Symplekin from D. melanogaster
Descriptor: Symplekin
Authors:Kennedy, S.A, Redinbo, M.R.
Deposit date:2009-03-26
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the HEAT domain from the Pre-mRNA processing factor Symplekin.
J.Mol.Biol., 392, 2009
2LX1
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BU of 2lx1 by Molmil
Major Conformation of the Internal Loop 5'GAGU/3'UGAG
Descriptor: RNA (5'-R(*GP*AP*CP*GP*AP*GP*UP*GP*UP*CP*A)-3')
Authors:Kennedy, S.D, Turner, D.H.
Deposit date:2012-08-12
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel conformation of an RNA structural switch.
Biochemistry, 51, 2012
2O83
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BU of 2o83 by Molmil
The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
Descriptor: 5'-R(*GP*GP*(IC)P*GP*AP*(IG)P*CP*CP*A)-3'
Authors:Kennedy, S.D, Turner, D.H.
Deposit date:2006-12-11
Release date:2007-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
4YND
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BU of 4ynd by Molmil
The Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2
Descriptor: N-cyclohexyl-N~3~-[2-(3,4-dichlorophenyl)ethyl]-N-(2-{[(2R)-2-hydroxy-2-(3-oxo-3,4-dihydro-2H-1,4-benzoxazin-8-yl)ethyl]amino}ethyl)-beta-alaninamide, N-lysine methyltransferase SMYD2, S-ADENOSYLMETHIONINE, ...
Authors:Sweis, R.F, Wang, Z, Algire, M, Arrowsmith, C.H, Brown, P.J, Chiang, G.C, Guo, J, Jakob, C.G, Kennedy, S, Li, F, Soni, N.B, Vedadi, M, Pappano, W.N.
Deposit date:2015-03-09
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2.
Acs Med.Chem.Lett., 6, 2015
4RYL
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BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
6N8H
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BU of 6n8h by Molmil
RNA Duplex containing the internal loop 5'-GCAU/3'-UACG
Descriptor: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
7RQ5
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BU of 7rq5 by Molmil
Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide
Descriptor: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3')
Authors:Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
Deposit date:2021-08-05
Release date:2022-01-19
Last modified:2022-03-30
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna, 28, 2022
6N8I
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BU of 6n8i by Molmil
RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU
Descriptor: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8F
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BU of 6n8f by Molmil
RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG
Descriptor: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6AU2
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BU of 6au2 by Molmil
Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
Descriptor: 1,2-ETHANEDIOL, 1-methyl-4H,6H-[1,2,4]triazolo[4,3-a][4,1]benzoxazepine, BETA-MERCAPTOETHANOL, ...
Authors:MADER, P, Mendoza-Sanchez, R, IQBAL, A, DONG, A, DOBROVETSKY, E, CORLESS, V.B, LIEW, S.K, TEMPEL, W, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D, HOLOWNIA, A, VEDADI, M, BROWN, P.J, SANTHAKUMAR, V, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2017-08-30
Release date:2017-10-11
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Identification and characterization of the first fragment hits for SETDB1 Tudor domain.
Bioorg.Med.Chem., 27, 2019
6BPI
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BU of 6bpi by Molmil
Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates
Descriptor: 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, MLY-SER-THR-E2G, ...
Authors:MADER, P, Mendoza-Sanchez, R, DONG, A, DOBROVETSKY, E, IQBAL, A, CORLESS, V, TEMPEL, W, LIEW, S.K, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D.B, SCHAPIRA, M, VEDADI, M, BROWN, P.J, Santhakumar, V, FRYE, S, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2017-11-23
Release date:2017-12-27
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates
to be published
6AU3
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BU of 6au3 by Molmil
Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
Descriptor: 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, N-{[2-(3,5-dimethyl-4H-1,2,4-triazol-4-yl)phenyl]methyl}acetamide, ...
Authors:MADER, P, Mendoza-Sanchez, R, IQBAL, A, DONG, A, DOBROVETSKY, E, CORLESS, V.B, LIEW, S.K, TEMPEL, W, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D, HOLOWNIA, A, VEDADI, M, BROWN, P.J, SANTHAKUMAR, V, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2017-08-30
Release date:2017-09-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
to be published
2DD1
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BU of 2dd1 by Molmil
Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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BU of 2dd3 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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BU of 2dd2 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
3FLD
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BU of 3fld by Molmil
Crystal structure of the trai c-terminal domain
Descriptor: Protein traI, SULFATE ION
Authors:Guogas, L.M, Kennedy, S.A, Redinbo, M.R.
Deposit date:2008-12-18
Release date:2009-02-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel fold in the TraI relaxase-helicase c-terminal domain is essential for conjugative DNA transfer.
J.Mol.Biol., 386, 2009
1XV0
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BU of 1xv0 by Molmil
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2004-10-26
Release date:2004-11-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
1TUT
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BU of 1tut by Molmil
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
Descriptor: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Authors:Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
Deposit date:2004-06-25
Release date:2004-12-28
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
2L8F
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BU of 2l8f by Molmil
Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
Authors:Lerman, Y, Kennedy, S.D, Turner, D.H.
Deposit date:2011-01-11
Release date:2011-08-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011
2MXK
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BU of 2mxk by Molmil
Structural features of a 3' splice site influenza A: 19-nt duplex
Descriptor: RNA (5'-R(*GP*CP*AP*GP*GP*CP*CP*CP*A)-3'), RNA (5'-R(*UP*GP*GP*GP*AP*GP*UP*GP*CP*A)-3')
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXJ
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BU of 2mxj by Molmil
Structural features of a 3' splice site influenza A: 11-nt hairpin
Descriptor: RNA_(11-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXL
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BU of 2mxl by Molmil
Structural features of a 3' splice site in influenza A: 39-nt hairpin
Descriptor: RNA (39-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
5V2R
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BU of 5v2r by Molmil
Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop
Descriptor: RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
Authors:Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
Deposit date:2017-03-06
Release date:2017-07-26
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.
Biochemistry, 56, 2017
2KY0
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BU of 2ky0 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG
Descriptor: 5'-R(*GP*AP*CP*GP*AP*GP*CP*GP*UP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KY1
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BU of 2ky1 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU
Descriptor: 5'-R(*GP*AP*CP*UP*AP*GP*AP*GP*UP*CP*A)-3'
Authors:Hammond, N.B, Kennedy, S.D, Turner, D.H.
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010

 

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