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PDB: 404 results

8SQU
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BU of 8squ by Molmil
Monomeric MapSPARTA bound with guide RNA and target DNA hybrid
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-04
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
1R5K
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BU of 1r5k by Molmil
Human Estrogen Receptor alpha Ligand-Binding Domain In Complex With GW5638
Descriptor: (2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID, Estrogen receptor
Authors:Wu, Y.-L, Yang, X, Ren, Z, McDonnell, D.P, Norris, J.D, Willson, T.M, Greene, G.L.
Deposit date:2003-10-10
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for an unexpected mode of SERM-mediated ER antagonism.
Mol.Cell, 18, 2005
3Q54
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BU of 3q54 by Molmil
Crystal structure of Escherichia coli BamB
Descriptor: Outer membrane assembly lipoprotein YfgL
Authors:Dong, C, Hou, H, Yang, X.
Deposit date:2010-12-27
Release date:2012-05-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Structure of Escherichia coli BamB and its interaction with POTRA domains of BamA.
Acta Crystallogr.,Sect.D, 68, 2012
5IWZ
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BU of 5iwz by Molmil
Synaptonemal complex protein
Descriptor: Synaptonemal complex protein 2
Authors:Feng, J, Fu, S, Cao, X, Wu, H, Lu, J, Zeng, M, Liu, L, Yang, X, Shen, Y.
Deposit date:2016-03-23
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Structure of synaptonemal complexes protein at 2.6 angstroms resolution
To Be Published
2P4L
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BU of 2p4l by Molmil
Structure and sodium channel activity of an excitatory I1-superfamily conotoxin
Descriptor: I-superfamily conotoxin r11a
Authors:Buczek, O, Wei, D.X, Babon, J.J, Yang, X.D, Fiedler, B, Yoshikami, D, Olivera, B.M, Bulaj, G, Norton, R.S.
Deposit date:2007-03-12
Release date:2007-09-25
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure and Sodium Channel Activity of an Excitatory I(1)-Superfamily Conotoxin
Biochemistry, 46, 2007
6EO6
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BU of 6eo6 by Molmil
X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(2-(1H-indol-3-yl)acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, GA63A - TBA MODIFIED APTAMER, ...
Authors:Dolot, R.M, Nawrot, B, Yang, X.
Deposit date:2017-10-09
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.
Nucleic Acids Res., 46, 2018
6EO7
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BU of 6eo7 by Molmil
X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, GA68B2 - MODIFIED HUMAN THROMBIN BINDING APTAMER, ...
Authors:Dolot, R.M, Nawrot, B, Yang, X.
Deposit date:2017-10-09
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.
Nucleic Acids Res., 46, 2018
1RKT
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BU of 1rkt by Molmil
Crystal structure of yfiR, a putative transcriptional regulator from Bacillus subtilis
Descriptor: UNKNOWN ATOM OR ION, protein yfiR
Authors:Anderson, W.F, Rajan, S.S, Yang, X, Midwest Center for Structural Genomics (MCSG)
Deposit date:2003-11-23
Release date:2004-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis.
Proteins, 65, 2006
4R3Q
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BU of 4r3q by Molmil
Crystal structure of SYCE3
Descriptor: Synaptonemal complex central element protein 3
Authors:Lu, J, Feng, J, Zhou, W, Yang, X, Shen, Y.
Deposit date:2014-08-17
Release date:2014-11-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural insight into the central element assembly of the synaptonemal complex
Sci Rep, 4, 2014
5Z0V
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BU of 5z0v by Molmil
Structural insight into the Zika virus capsid encapsulating the viral genome
Descriptor: Extracellular solute-binding protein family 1,viral genome protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Li, T, Zhao, Q, Yang, X, Chen, C, Yang, K, Wu, C, Zhang, T, Duan, Y, Xue, X, Mi, K, Ji, X, Wang, Z, Yang, H.
Deposit date:2017-12-21
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.913 Å)
Cite:Structural insight into the Zika virus capsid encapsulating the viral genome.
Cell Res., 28, 2018
3ULF
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BU of 3ulf by Molmil
The light state structure of the blue-light photoreceptor Aureochrome1 LOV
Descriptor: Aureochrome1, FLAVIN MONONUCLEOTIDE, PHOSPHATE ION
Authors:Mitra, D, Yang, X, Moffat, K.
Deposit date:2011-11-10
Release date:2012-04-11
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of Aureochrome1 LOV suggest new design strategies for optogenetics.
Structure, 20, 2012
3UE6
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BU of 3ue6 by Molmil
The dark structure of the blue-light photoreceptor Aureochrome1 LOV
Descriptor: Aureochrome1, FLAVIN MONONUCLEOTIDE, PHOSPHATE ION
Authors:Mitra, D, Yang, X, Moffat, K.
Deposit date:2011-10-28
Release date:2012-04-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of Aureochrome1 LOV suggest new design strategies for optogenetics.
Structure, 20, 2012
4G85
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BU of 4g85 by Molmil
Crystal structure of human HisRS
Descriptor: Histidine-tRNA ligase, cytoplasmic
Authors:Wei, Z, Wu, J, Zhou, J.J, Yang, X.-L, Zhang, M, Schimmel, P.
Deposit date:2012-07-21
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Internally Deleted Human tRNA Synthetase Suggests Evolutionary Pressure for Repurposing.
Structure, 20, 2012
8ZCJ
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BU of 8zcj by Molmil
Cryo-EM structure of the pasireotide-bound SSTR5-Gi complex
Descriptor: 004-DTR-LYS-TYR-PHA-HYP, Beta-2 adrenergic receptor,Somatostatin receptor type 5,lgbit (fusion protein), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Li, Y.G, Meng, X.Y, Yang, X.R, Ling, S.L, Shi, P, Tian, C.L, Yang, F.
Deposit date:2024-04-29
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural insights into somatostatin receptor 5 bound with cyclic peptides.
Acta Pharmacol.Sin., 2024
2ZKS
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BU of 2zks by Molmil
Structural insights into the proteolytic machinery of apoptosis-inducing Granzyme M
Descriptor: Granzyme M, SULFATE ION, hGzmM inhibitor
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Yang, X, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-03-28
Release date:2009-03-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
2ZT6
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BU of 2zt6 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with AMPCPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Glycyl-tRNA synthetase
Authors:Guo, R.T, Yang, X.L, Schimmel, P.
Deposit date:2008-09-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZXF
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BU of 2zxf by Molmil
Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with AP4A)
Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase
Authors:Guo, R.T, Yang, X.L, Schimmel, P.
Deposit date:2008-12-23
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZT8
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BU of 2zt8 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with Gly-AMP analog
Descriptor: Glycyl-tRNA synthetase, [(2S,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (aminoacetyl)sulfamate
Authors:Guo, R.T, Yang, X.L, Schimmel, P.
Deposit date:2008-09-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
4G84
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BU of 4g84 by Molmil
Crystal structure of human HisRS
Descriptor: CHLORIDE ION, Histidine--tRNA ligase, cytoplasmic, ...
Authors:Wei, Z, Wu, J, Zhou, J.J, Yang, X.-L, Zhang, M, Schimmel, P.
Deposit date:2012-07-21
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Internally Deleted Human tRNA Synthetase Suggests Evolutionary Pressure for Repurposing.
Structure, 20, 2012
2ZT5
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BU of 2zt5 by Molmil
Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with ATP)
Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase
Authors:Guo, R.T, Yang, X.L, Schimmel, P.
Deposit date:2008-09-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZT7
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BU of 2zt7 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with Glycine and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCINE, Glycyl-tRNA synthetase
Authors:Guo, R.T, Yang, X.L, Schimmel, P.
Deposit date:2008-09-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
3Q5M
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BU of 3q5m by Molmil
Crystal structure of Escherichia coli BamD
Descriptor: IODIDE ION, UPF0169 lipoprotein yfiO
Authors:Dong, C, Hou, H, Yang, X, Dong, Y, Shen, Y.
Deposit date:2010-12-28
Release date:2011-12-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Structure of Escherichia coli BamD and its functional implications in outer membrane protein assembly
Acta Crystallogr.,Sect.D, 68, 2012
4O9B
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BU of 4o9b by Molmil
The Structure of CC1-IH in human STIM1.
Descriptor: CADMIUM ION, Stromal interaction molecule 1
Authors:Cui, B, Yang, X, Li, S, Shen, Y.
Deposit date:2014-01-02
Release date:2014-01-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:The inhibitory helix controls the intramolecular conformational switching of the C-terminus of STIM1.
Plos One, 8, 2013
7CAF
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BU of 7caf by Molmil
Mycobacterium smegmatis LpqY-SugABC complex in the pre-translocation state
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liu, F, Liang, J, Zhang, B, Gao, Y, Yang, X, Hu, T, Rao, Z.
Deposit date:2020-06-08
Release date:2020-12-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of trehalose recycling by the ABC transporter LpqY-SugABC.
Sci Adv, 6, 2020
7CAG
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BU of 7cag by Molmil
Mycobacterium smegmatis LpqY-SugABC complex in the catalytic intermediate state
Descriptor: ABC sugar transporter, permease component, ABC transporter, ...
Authors:Liu, F, Liang, J, Zhang, B, Gao, Y, Yang, X, Hu, T.
Deposit date:2020-06-08
Release date:2020-12-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Structural basis of trehalose recycling by the ABC transporter LpqY-SugABC.
Sci Adv, 6, 2020

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PDB entries from 2024-10-16

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