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PDB: 579 results

7EGG
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BU of 7egg by Molmil
TFIID lobe B subcomplex
Descriptor: Transcription initiation factor TFIID subunit 10, Transcription initiation factor TFIID subunit 12, Transcription initiation factor TFIID subunit 4, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-05
Last modified:2021-05-19
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
7EGH
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BU of 7egh by Molmil
TFIID lobe C subcomplex
Descriptor: DNA (45-MER), Transcription initiation factor TFIID subunit 1, Transcription initiation factor TFIID subunit 2, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
7EGI
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BU of 7egi by Molmil
TFIID in rearranged conformation
Descriptor: TATA-box-binding protein, Transcription initiation factor IIA subunit 1, Transcription initiation factor IIA subunit 2, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (9.82 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
7EGD
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BU of 7egd by Molmil
SCP promoter-bound TFIID-TFIIA in initial TBP-loading state
Descriptor: DNA (72-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (6.75 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
7EGJ
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BU of 7egj by Molmil
SCP promoter-bound TFIID-TFIIA in post TBP-loading state
Descriptor: DNA (74-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (8.64 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
7EGE
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BU of 7ege by Molmil
TFIID in canonical conformation
Descriptor: TATA-box-binding protein, Transcription initiation factor TFIID subunit 1, Transcription initiation factor TFIID subunit 10, ...
Authors:Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
Deposit date:2021-03-24
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structural insights into preinitiation complex assembly on core promoters.
Science, 372, 2021
8J1X
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BU of 8j1x by Molmil
A near-infrared fluorescent protein of de novo backbone design
Descriptor: near-infrared fluorescent protein
Authors:Hu, X, Xu, Y.
Deposit date:2023-04-13
Release date:2023-10-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Using Protein Design and Directed Evolution to Monomerize a Bright Near-Infrared Fluorescent Protein.
Acs Synth Biol, 13, 2024
8J1W
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BU of 8j1w by Molmil
A near-infrared fluorescent protein of de novo backbone design
Descriptor: near-infrared fluorescent protein
Authors:Hu, X, Xu, Y.
Deposit date:2023-04-13
Release date:2023-10-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Using Protein Design and Directed Evolution to Monomerize a Bright Near-Infrared Fluorescent Protein.
Acs Synth Biol, 13, 2024
5XM5
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BU of 5xm5 by Molmil
Crystal structure of Zinc binding protein ZinT at 1.49 Angstrom from E. coli
Descriptor: Metal-binding protein ZinT, SODIUM ION, ZINC ION
Authors:Chen, J, Wang, L, Guo, J, Xu, Y.
Deposit date:2017-05-12
Release date:2017-05-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.493 Å)
Cite:Crystal structure of Zinc binding protein ZinT at 1.49 Angstrom from E. coli
To Be Published
7VYQ
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BU of 7vyq by Molmil
Short chain dehydrogenase (SCR) cryoEM structure with NADP and ethyl 4-chloroacetoacetate
Descriptor: Carbonyl Reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ethyl 4-chloranyl-3-oxidanylidene-butanoate
Authors:Li, Y.H, Zhang, R.Z, Wang, C, Forouhar, F, Clarke, O, Vorobiev, S, Singh, S, Montelione, G.T, Szyperski, T, Xu, Y, Hunt, J.F.
Deposit date:2021-11-15
Release date:2022-04-06
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Oligomeric interactions maintain active-site structure in a noncooperative enzyme family.
Embo J., 41, 2022
7W7H
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BU of 7w7h by Molmil
S Suis FakA-FakB2 complex structure
Descriptor: OLEIC ACID, Predicted kinase related to dihydroxyacetone kinase, SULFATE ION, ...
Authors:Shi, Y, Zang, N, Lou, N, Xu, Y, Sun, J, Huang, M, Zhang, H, Lu, H, Zhou, C, Feng, Y.
Deposit date:2021-12-04
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and mechanism for streptococcal fatty acid kinase (Fak) system dedicated to host fatty acid scavenging.
Sci Adv, 8, 2022
7FJI
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BU of 7fji by Molmil
human Pol III elongation complex
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Hou, H, Xu, Y.
Deposit date:2021-08-04
Release date:2021-10-27
Last modified:2021-11-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into RNA polymerase III-mediated transcription termination through trapping poly-deoxythymidine.
Nat Commun, 12, 2021
6I2O
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BU of 6i2o by Molmil
Solution NMR structure of PilE1 from Streptococcus sanguinis
Descriptor: Type IV pilin PilE1
Authors:Berry, J.L, Xu, Y.
Deposit date:2018-11-01
Release date:2019-03-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global biochemical and structural analysis of the type IV pilus from the Gram-positive bacteriumStreptococcus sanguinis.
J.Biol.Chem., 294, 2019
5ZHZ
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BU of 5zhz by Molmil
Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis
Descriptor: Probable endonuclease 4, SULFATE ION, ZINC ION
Authors:Zhang, W, Xu, Y, Yan, M, Li, S, Wang, H, Yang, H, Zhou, W, Rao, Z.
Deposit date:2018-03-13
Release date:2018-04-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis.
Biochem. Biophys. Res. Commun., 498, 2018
5Z7H
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BU of 5z7h by Molmil
Crystal structure of CcpE regulatory domain in citrate-bound form from Staphyloccocus aureus
Descriptor: CITRATE ANION, LysR family transcriptional regulator
Authors:Chen, J, Wang, L, Shang, F, Xu, Y.
Deposit date:2018-01-28
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Citrate-responsive mechanism of catabolite control protein E from Staphyloccocus aureus
To Be Published
5ZD4
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BU of 5zd4 by Molmil
Crystal structure of MBP-fused BIL1/BZR1 in complex with double-stranded DNA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1, ...
Authors:Nosaki, S, Miyakawa, T, Xu, Y, Nakamura, A, Hirabayashi, K, Tanokura, M.
Deposit date:2018-02-22
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural basis for brassinosteroid response by BIL1/BZR1.
Nat Plants, 4, 2018
6A0W
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BU of 6a0w by Molmil
Crystal structure of lipase from Rhizopus microsporus var. chinensis
Descriptor: Lipase, SULFATE ION
Authors:Zhang, M, Yu, X.W, Xu, Y, Huang, C.H, Guo, R.T.
Deposit date:2018-06-06
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis by Which the N-Terminal Polypeptide Segment ofRhizopus chinensisLipase Regulates Its Substrate Binding Affinity.
Biochemistry, 58, 2019
7Y8R
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BU of 7y8r by Molmil
The nucleosome-bound human PBAF complex
Descriptor: ACTB protein (Fragment), ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2, ...
Authors:Wang, L, Yu, J, Yu, Z, Wang, Q, He, S, Xu, Y.
Deposit date:2022-06-24
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of nucleosome-bound human PBAF complex.
Nat Commun, 13, 2022
7DDX
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BU of 7ddx by Molmil
Crystal structure of KANK1 S1179F mutant in complex wtih eIF4A1
Descriptor: Eukaryotic initiation factor 4A-I, GLYCEROL, KN motif and ankyrin repeat domains 1, ...
Authors:Pan, W, Xu, Y, Wei, Z.
Deposit date:2020-10-30
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nephrotic-syndrome-associated mutation of KANK2 induces pathologic binding competition with physiological interactor KIF21A.
J.Biol.Chem., 297, 2021
7V2J
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BU of 7v2j by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 33
Descriptor: Bromodomain-containing protein 4, ~{N}-(3-ethyl-6-methoxy-1,2-benzoxazol-5-yl)-4-methoxy-benzenesulfonamide
Authors:Zhang, M, Wang, C, Zhang, C, Zhang, Y, Xu, Y.
Deposit date:2021-08-09
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Design, synthesis and pharmacological characterization of N-(3-ethylbenzo[d]isoxazol-5-yl) sulfonamide derivatives as BRD4 inhibitors against acute myeloid leukemia.
Acta Pharmacol.Sin., 43, 2022
7V1U
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BU of 7v1u by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZJ12
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-(3-ethyl-6-methoxy-1,2-benzoxazol-5-yl)-2-methoxy-benzenesulfonamide
Authors:Zhang, M, Wang, C, Zhang, C, Zhang, Y, Xu, Y.
Deposit date:2021-08-06
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Design, synthesis and pharmacological characterization of N-(3-ethylbenzo[d]isoxazol-5-yl) sulfonamide derivatives as BRD4 inhibitors against acute myeloid leukemia.
Acta Pharmacol.Sin., 43, 2022
7D1G
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BU of 7d1g by Molmil
Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase GAPDH from Clostridium beijerinckii
Descriptor: BETA-MERCAPTOETHANOL, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION
Authors:Chen, Y, Lan, J, Liu, W, Wang, L, Xu, Y.
Deposit date:2020-09-14
Release date:2021-03-17
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase GAPDH from Clostridium beijerinckii
To Be Published
7DN3
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BU of 7dn3 by Molmil
Structure of Human RNA Polymerase III elongation complex
Descriptor: DNA (5'-D(P*TP*CP*GP*TP*CP*TP*GP*AP*TP*CP*TP*CP*GP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*CP*GP*AP*GP*AP*TP*CP*AP*GP*AP*CP*GP*AP*GP*AP*TP*CP*GP*GP*G)-3'), DNA-directed RNA polymerase III subunit RPC1, ...
Authors:Li, L, Yu, Z, Zhao, D, Ren, Y, Hou, H, Xu, Y.
Deposit date:2020-12-08
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of human RNA polymerase III elongation complex.
Cell Res., 31, 2021
7DHS
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BU of 7dhs by Molmil
Crystal Structure Analysis of the BRD4
Descriptor: 6-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1R)-1-phenylethyl]benzo[cd]indol-2-one, Bromodomain-containing protein 4
Authors:Wu, T, Xiang, Q, Wang, C, Wu, C, Zhang, C, Zhang, M, Liu, Z, Zhang, Y, Xiao, L, Xu, Y.
Deposit date:2020-11-17
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Y06014 is a selective BET inhibitor for the treatment of prostate cancer.
Acta Pharmacol.Sin., 42, 2021
7DU2
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BU of 7du2 by Molmil
RNA polymerase III EC complex in post-translocation state
Descriptor: DNA (5'-D(P*GP*TP*CP*TP*GP*AP*TP*CP*TP*CP*GP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*CP*GP*AP*GP*AP*TP*CP*AP*GP*AP*CP*GP*AP*GP*AP*T)-3'), DNA-directed RNA polymerase III subunit RPC1, ...
Authors:Li, L, Yu, Z, Zhao, D, Ren, Y, Hou, H, Xu, Y.
Deposit date:2021-01-07
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structure of human RNA polymerase III elongation complex.
Cell Res., 31, 2021

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