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PDB: 106 results
6TWB
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BU of 6twb by Molmil
Crystal Structure of the Catalytic Domain of Coagulation Factor XIa in Complex with Double Bridged Peptide F19
Descriptor: AMMONIUM ION, Coagulation factor XI, Double Bridged Peptide F19
Authors:Kong, X.D, Pojer, F, Heinis, C.
Deposit date:2020-01-13
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:De novo development of proteolytically resistant therapeutic peptides for oral administration.
Nat Biomed Eng, 4, 2020
6TWC
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BU of 6twc by Molmil
Crystal Structure of the Catalytic Domain of the Coagulation Factor XIa in Complex with Double Bridged Peptide F21
Descriptor: ACETONE, Coagulation factor XI, Double Bridged Peptide F21
Authors:Kong, X.D, Pojer, F, Heinis, C.
Deposit date:2020-01-13
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:De novo development of proteolytically resistant therapeutic peptides for oral administration.
Nat Biomed Eng, 4, 2020
2POL
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BU of 2pol by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP
Descriptor: DNA POLYMERASE III (BETA SUBUNIT)
Authors:Kong, X.-P, Kuriyan, J.
Deposit date:1992-11-13
Release date:1994-01-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp.
Cell(Cambridge,Mass.), 69, 1992
6W73
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BU of 6w73 by Molmil
Fab Structure of CD4 Binding Site (CD4bs) Huamn Monoclonal Antibody HmAb64
Descriptor: CALCIUM ION, HmAb64 fab heavy chain, HmAb64 fab light chain
Authors:Kong, X, Pan, R.
Deposit date:2020-03-18
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A CD4 Binding Site (CD4bs) Monoclonal Antibody Elicited from A Human Volunteer Immunized by a DNA Prime/Protein Boost gp120 HIV Vaccine
To Be Published
3KTZ
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BU of 3ktz by Molmil
Structure of GAP31
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein gelonin
Authors:Kong, X.-P.
Deposit date:2009-11-26
Release date:2010-01-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions.
Biochem.Biophys.Res.Commun., 391, 2010
3KU0
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BU of 3ku0 by Molmil
Structure of GAP31 with adenine at its binding pocket
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein gelonin
Authors:Kong, X.-P.
Deposit date:2009-11-26
Release date:2010-01-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions.
Biochem.Biophys.Res.Commun., 391, 2010
2G35
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BU of 2g35 by Molmil
NMR structure of talin-PTB in complex with PIPKI
Descriptor: Talin-1, peptide
Authors:Kong, X, Wang, X, Misra, S, Qin, J.
Deposit date:2006-02-17
Release date:2006-05-02
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structural Basis for the Phosphorylation-regulated Focal Adhesion Targeting of Type Igamma Phosphatidylinositol Phosphate Kinase (PIPKIgamma) by Talin.
J.Mol.Biol., 359, 2006
3MLS
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BU of 3mls by Molmil
Crystal structure of anti-HIV-1 V3 mAb 2557 Fab in complex with a HIV-1 gp120 V3 mimotope
Descriptor: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Rationally designed V3 mimotope
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
2F23
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BU of 2f23 by Molmil
Crystal structure of GreA factor homolog 1 (Gfh1) protein of Thermus thermophilus
Descriptor: Anti-cleavage anti-greA transcription factor gfh1
Authors:Kong, X.P, Kim, S.-S.
Deposit date:2005-11-15
Release date:2006-05-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:pH-dependent conformational switch activates the inhibitor of transcription elongation.
Embo J., 25, 2006
3MLV
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BU of 3mlv by Molmil
Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with an NOF V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLY
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BU of 3mly by Molmil
Crystal structure of anti-HIV-1 V3 Fab 3074 in complex with a UR29 V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLW
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BU of 3mlw by Molmil
Crystal structure of anti-HIV-1 V3 Fab 1006-15D in complex with an MN V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 1006-15D Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 1006-15D Fab light chain, ...
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLT
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BU of 3mlt by Molmil
Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with a UG1033 V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLX
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BU of 3mlx by Molmil
Crystal structure of anti-HIV-1 V3 Fab 3074 in complex with an MN V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLZ
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BU of 3mlz by Molmil
Crystal structure of anti-HIV-1 V3 Fab 3074 in complex with a VI191 V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLU
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BU of 3mlu by Molmil
Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with a ZAM18 V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLR
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BU of 3mlr by Molmil
Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with a NY5 V3 peptide
Descriptor: HIV-1 gp120 third variable region (V3) crown, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
4XMK
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BU of 4xmk by Molmil
Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424 in complex with JR-FL V3 peptide
Descriptor: HIV-1 JR-FL gp120 V3 peptide, Heavy chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424, Light chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424
Authors:Kong, X.-P, Pan, R.
Deposit date:2015-01-14
Release date:2015-07-08
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (3.179 Å)
Cite:Functional and Structural Characterization of Human V3-Specific Monoclonal Antibody 2424 with Neutralizing Activity against HIV-1 JRFL.
J.Virol., 89, 2015
3GHE
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BU of 3ghe by Molmil
Crystal structure of anti-HIV-1 Fab 537-10D in complex with V3 peptide MN
Descriptor: Envelope glycoprotein, Fab 537-10D, heavy chain, ...
Authors:Kong, X.P, Burke, V.J.
Deposit date:2009-03-03
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of the cross-reactivity of genetically related human anti-HIV-1 mAbs: implications for design of V3-based immunogens
Structure, 17, 2009
3GHB
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BU of 3ghb by Molmil
Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 peptide W2RW020
Descriptor: Envelope glycoprotein, Fab 447-52D, heavy chain, ...
Authors:Kong, X.P, Burke, V.J.
Deposit date:2009-03-03
Release date:2009-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis of the cross-reactivity of genetically related human anti-HIV-1 mAbs: implications for design of V3-based immunogens
Structure, 17, 2009
3GO1
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BU of 3go1 by Molmil
Crystal structure of anti-HIV-1 Fab 268-D in complex with V3 peptide MN
Descriptor: Envelope glycoprotein gp160, Fab 268-D, heavy chain, ...
Authors:Kong, X.P, Burke, V.J.
Deposit date:2009-03-18
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3UJI
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BU of 3uji by Molmil
Crystal structure of anti-HIV-1 V3 Fab 2558 in complex with MN peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Envelope glycoprotein gp160, ...
Authors:Kong, X.P.
Deposit date:2011-11-07
Release date:2011-12-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Human Anti-V3 HIV-1 Monoclonal Antibodies Encoded by the VH5-51/VL Lambda Genes Define a Conserved Antigenic Structure.
Plos One, 6, 2011
3UJJ
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BU of 3ujj by Molmil
Crystal structure of anti-HIV-1 V3 Fab 4025 in complex with Con A peptide
Descriptor: ACETATE ION, Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 4025, GLYCEROL, ...
Authors:Kong, X.P, Sampson, J.
Deposit date:2011-11-07
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human Anti-V3 HIV-1 Monoclonal Antibodies Encoded by the VH5-51/VL Lambda Genes Define a Conserved Antigenic Structure.
Plos One, 6, 2011
5H5X
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BU of 5h5x by Molmil
Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ISOPROPYL ALCOHOL, MAGNESIUM ION, ...
Authors:Kong, X.-D, Xu, J.-H, Zhou, J.
Deposit date:2016-11-10
Release date:2017-05-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor
To Be Published
4XBX
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BU of 4xbx by Molmil
Crystal Structure of the L74F/M78F/L103V/L114V/I116V/F139V/L147V mutant of LEH
Descriptor: Limonene-1,2-epoxide hydrolase
Authors:Kong, X.D, Sun, Z, Xu, J.H, Reetz, M.T, Zhou, J.
Deposit date:2014-12-17
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015

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