Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 233 results

1SNJ
DownloadVisualize
BU of 1snj by Molmil
Solution structure of the DNA three-way junction with the A/C-stacked conformation
Descriptor: 36-MER
Authors:Wu, B, Girard, F, van Buuren, B, Schleucher, J, Tessari, M, Wijmenga, S.
Deposit date:2004-03-11
Release date:2005-04-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Global structure of a DNA three-way junction by solution NMR: towards prediction of 3H fold.
Nucleic Acids Res., 32, 2004
3LJA
DownloadVisualize
BU of 3lja by Molmil
Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome
Descriptor: 147mer DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2010-01-26
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome
J.Mol.Biol., 398, 2010
4GL2
DownloadVisualize
BU of 4gl2 by Molmil
Structural Basis for dsRNA duplex backbone recognition by MDA5
Descriptor: Interferon-induced helicase C domain-containing protein 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3'), ...
Authors:Wu, B, Hur, S.
Deposit date:2012-08-13
Release date:2013-01-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.557 Å)
Cite:Structural Basis for dsRNA Recognition, Filament Formation, and Antiviral Signal Activation by MDA5.
Cell(Cambridge,Mass.), 152, 2013
3LEL
DownloadVisualize
BU of 3lel by Molmil
Structural Insight into the Sequence-Dependence of Nucleosome Positioning
Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Vasudevan, D, Davey, C.A.
Deposit date:2010-01-15
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insight into the sequence dependence of nucleosome positioning
Structure, 18, 2010
1D2B
DownloadVisualize
BU of 1d2b by Molmil
THE MMP-INHIBITORY, N-TERMINAL DOMAIN OF HUMAN TISSUE INHIBITOR OF METALLOPROTEINASES-1 (N-TIMP-1), SOLUTION NMR, 29 STRUCTURES
Descriptor: Metalloproteinase inhibitor 1
Authors:Wu, B, Arumugam, S, Semenchenko, V, Brew, K, Van Doren, S.R.
Deposit date:1999-09-22
Release date:1999-12-22
Last modified:2022-03-23
Method:SOLUTION NMR
Cite:NMR structure of tissue inhibitor of metalloproteinases-1 implicates localized induced fit in recognition of matrix metalloproteinases.
J.Mol.Biol., 295, 2000
1P5Q
DownloadVisualize
BU of 1p5q by Molmil
Crystal Structure of FKBP52 C-terminal Domain
Descriptor: FK506-binding protein 4, SULFATE ION
Authors:Wu, B, Li, P, Lou, Z, Shu, C, Ding, Y, Shen, B, Rao, Z.
Deposit date:2003-04-28
Release date:2004-06-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
1QZ2
DownloadVisualize
BU of 1qz2 by Molmil
Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90
Descriptor: 5-mer peptide from Heat shock protein HSP 90, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Liu, Y, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-09-15
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex.
Proc.Natl.Acad.Sci.USA, 101, 2004
1Q1C
DownloadVisualize
BU of 1q1c by Molmil
Crystal structure of N(1-260) of human FKBP52
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-07-18
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
7X5C
DownloadVisualize
BU of 7x5c by Molmil
Solution structure of Tetrahymena p75OB1-p50PBM
Descriptor: Telomerase associated protein p50PBM, Telomerase-associated protein p75OB1
Authors:Wu, B, Tang, T, Xue, H.J, Wu, J, Lei, M.
Deposit date:2022-03-04
Release date:2022-10-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Association of the CST complex and p50 in Tetrahymena is crucial for telomere maintenance
Structure, 2022
2YII
DownloadVisualize
BU of 2yii by Molmil
Manipulating the regioselectivity of phenylalanine aminomutase: new insights into the reaction mechanism of MIO-dependent enzymes from structure-guided directed evolution
Descriptor: BETA-MERCAPTOETHANOL, FORMIC ACID, GLYCEROL, ...
Authors:Wu, B, Szymanski, W, Wybenga, G.G, Heberling, M.M, Bartsch, S, Wildeman, S, Poelarends, G.J, Feringa, B.L, Dijkstra, B.W, Janssen, D.B.
Deposit date:2011-05-13
Release date:2011-11-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Mechanism-Inspired Engineering of Phenylalanine Aminomutase for Enhanced Beta-Regioselective Asymmetric Amination of Cinnamates.
Angew.Chem.Int.Ed.Engl., 51, 2012
3B6F
DownloadVisualize
BU of 3b6f by Molmil
Nucleosome core particle treated with cisplatin
Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2007-10-29
Release date:2007-12-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Site selectivity of platinum anticancer therapeutics
Nat.Chem.Biol., 4, 2008
2F1Q
DownloadVisualize
BU of 2f1q by Molmil
Solution structure of a DNA Holliday Junction
Descriptor: 42-MER, COBALT HEXAMMINE(III)
Authors:Wu, B, van Buuren, B.N.M, Schleucher, J, Wijmenga, S.S.
Deposit date:2005-11-15
Release date:2007-03-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of a four-way junction in the presence of cobalt ion
TO BE PUBLISHED
3B6G
DownloadVisualize
BU of 3b6g by Molmil
Nucleosome core particle treated with oxaliplatin
Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2007-10-29
Release date:2007-12-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Site selectivity of platinum anticancer therapeutics
Nat.Chem.Biol., 4, 2008
2LNW
DownloadVisualize
BU of 2lnw by Molmil
Identification and structural basis for a novel interaction between Vav2 and Arap3
Descriptor: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3, Guanine nucleotide exchange factor VAV2
Authors:Wu, B, Zhang, J, Wu, J, Shi, Y.
Deposit date:2012-01-05
Release date:2012-11-21
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Identification and structural basis for a novel interaction between Vav2 and Arap3.
J.Struct.Biol., 180, 2012
2LNX
DownloadVisualize
BU of 2lnx by Molmil
Solution structure of Vav2 SH2 domain
Descriptor: Guanine nucleotide exchange factor VAV2
Authors:Wu, B, Zhang, J, Wu, J, Shi, Y.
Deposit date:2012-01-05
Release date:2012-11-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Identification and structural basis for a novel interaction between Vav2 and Arap3.
J.Struct.Biol., 180, 2012
2GRG
DownloadVisualize
BU of 2grg by Molmil
Solution NMR Structure of Protein YNR034W-A from Saccharomyces cerevisiae. Northeast Structural Genomics Consortium Target YT727; Ontario Center for Structural Proteomics Target yst6499.
Descriptor: hypothetical protein; Ynr034w-ap
Authors:Wu, B, Yee, A, Ramelot, T, Lemak, A, Semesi, A, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-04-24
Release date:2006-05-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein yst6499 from Saccharomyces cerevisiae/ Northeast Structural Genomics Consortium Target YT727/ Ontario Center for Structural Proteomics Target yst6499
To be Published
1X9B
DownloadVisualize
BU of 1x9b by Molmil
Solution NMR Structure of Protein Ta0354 from Thermoplasma acidophilum. Ontario Center for Structural Proteomics target TA0354_69_121; Northeast Structural Genomics Consortium Target TaT38.
Descriptor: hypothetical membrane protein ta0354_69_121
Authors:Wu, B, Yee, A, Huang, Y.J, Ramelot, T.A, Semesi, A, Lemak, A, Edward, A, Kennedy, M, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2004-08-20
Release date:2004-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of hypothetical membrane protein ta0354_69_121 from Thermoplasma acidophilum
To be Published
3J6J
DownloadVisualize
BU of 3j6j by Molmil
3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Descriptor: Mitochondrial antiviral-signaling protein
Authors:Wu, B, Peisley, A, Li, Z, Egelman, E, Walz, T, Penczek, P, Hur, S.
Deposit date:2014-03-13
Release date:2014-07-30
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
5YRN
DownloadVisualize
BU of 5yrn by Molmil
Structure of RIP2 CARD domain
Descriptor: Receptor-interacting serine/threonine-protein kinase 2
Authors:Wu, B, Gong, Q.
Deposit date:2017-11-09
Release date:2018-11-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of RIP2 activation and signaling.
Nat Commun, 9, 2018
3KUY
DownloadVisualize
BU of 3kuy by Molmil
DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent
Descriptor: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2009-11-28
Release date:2010-01-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent
Nucleic Acids Res., 38, 2010
1NEI
DownloadVisualize
BU of 1nei by Molmil
Solution NMR Structure of Protein yoaG from Escherichia coli. Ontario Centre for Structural Proteomics Target EC0264_1_60; Northeast Structural Genomics Consortium Target ET94.
Descriptor: hypothetical protein yoaG
Authors:Wu, B, Pineda-Lucena, A, Yee, A, Cort, J, Kennedy, M.A, Edwards, A.M, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-12-11
Release date:2004-04-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein dimer encoded by the Yoag gene from Escherichia coli
To be published
1RQ6
DownloadVisualize
BU of 1rq6 by Molmil
Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
Descriptor: 30S ribosomal protein S17e
Authors:Wu, B, Yee, A, Huang, Y.J, Ramelot, T.A, Semesi, A, Jung, J.W, Edward, A, Lee, W, Kennedy, M.A, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2003-12-04
Release date:2004-12-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.
Protein Sci., 17, 2008
1NE3
DownloadVisualize
BU of 1ne3 by Molmil
Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744
Descriptor: 30S ribosomal protein S28E
Authors:Wu, B, Pineda-Lucena, A, Yee, A, Cort, J.R, Ramelot, T.A, Kennedy, M, Edwards, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-12-10
Release date:2003-12-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum.
Protein Sci., 12, 2003
2AYJ
DownloadVisualize
BU of 2ayj by Molmil
Solution structure of 50S ribosomal protein L40e from Sulfolobus solfataricus
Descriptor: 50S ribosomal protein L40e, ZINC ION
Authors:Wu, B, Yee, A, Lukin, J, Lemak, A, Semesi, A, Ramelot, T, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-09-07
Release date:2006-08-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ribosomal protein L40E, a unique C4 zinc finger protein encoded by archaeon Sulfolobus solfataricus
Protein Sci., 17, 2008
2AKK
DownloadVisualize
BU of 2akk by Molmil
Solution structure of phnA-like protein rp4479 from Rhodopseudomonas palustris
Descriptor: phnA-like protein
Authors:Wu, B, Yee, A, Ramelot, T.A, Semesi, A, Lemak, A, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2005-08-03
Release date:2006-08-22
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution structure of phnA-like protein rp4479 from Rhodopseudomonas palustris
To be Published

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon