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PDB: 315 results

2LNW
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Identification and structural basis for a novel interaction between Vav2 and Arap3
Descriptor: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3, Guanine nucleotide exchange factor VAV2
Authors:Wu, B, Zhang, J, Wu, J, Shi, Y.
Deposit date:2012-01-05
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification and structural basis for a novel interaction between Vav2 and Arap3.
J.Struct.Biol., 180, 2012
3LJA
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Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome
Descriptor: 147mer DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2010-01-26
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome
J.Mol.Biol., 398, 2010
3LEL
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Structural Insight into the Sequence-Dependence of Nucleosome Positioning
Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Vasudevan, D, Davey, C.A.
Deposit date:2010-01-15
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insight into the sequence dependence of nucleosome positioning
Structure, 18, 2010
2KKX
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Solution Structure of C-terminal domain of reduced NleG2-3 (residues 90-191) from Pathogenic E. coli O157:H7. Northeast Structural Genomics Consortium and Midwest Center for Structural Genomics target ET109A
Descriptor: Uncharacterized protein ECs2156
Authors:Wu, B, Yee, A, Fares, C, Lemak, A, Semest, A, Claude, M, Singer, A, Edwards, A, Savchenko, A, Montelione, G.T, Joachimiak, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP), Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-06-29
Release date:2009-08-25
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:NleG Type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases.
Plos Pathog., 6, 2010
2K4X
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BU of 2k4x by Molmil
Solution structure of 30S ribosomal protein S27A from Thermoplasma acidophilum
Descriptor: 30S ribosomal protein S27ae, ZINC ION
Authors:Wu, B, Yee, A, Fares, C, Lemak, A, Semest, A, Arrowsmith, C, Montelione, G.T, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2008-06-20
Release date:2008-08-19
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution structure of 30S ribosomal protein S27A from Thermoplasma acidophilum/Northeast Structural Genomics Consortium Target TaT88/Ontario Center for Structural Proteomics target ta1093
To be Published
2KYR
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BU of 2kyr by Molmil
Solution structure of Enzyme IIB subunit of PTS system from Escherichia coli K12. Northeast Structural Genomics Consortium target ER315/Ontario Center for Structural Proteomics target ec0544
Descriptor: Fructose-like phosphotransferase enzyme IIB component 1
Authors:Wu, B, Yee, A, Gutmanas, A, Semest, A, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2010-06-07
Release date:2010-06-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Enzyme IIB subunit of PTS system from Escherichia coli K12, Northeast Structural Genomics Consortium target ER315/Ontario Center for Structural Proteomics target ec0544
To be Published
2L2D
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BU of 2l2d by Molmil
Solution NMR Structure of human UBA-like domain of OTUD7A_11_83, NESG target HT6304A/OCSP target OTUD7A_11_83/SGC-Toronto
Descriptor: OTU domain-containing protein 7A
Authors:Wu, B, Yee, A, Lemak, A, Gutmanas, A, Houliston, S, Semesi, A, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP), Structural Genomics Consortium (SGC)
Deposit date:2010-08-17
Release date:2010-09-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The amino-terminal UBA domain of OTUD7A
To be Published
2L76
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Solution NMR structure of human NFATC2IP ubiquitin-like domain, NFATC2IP_244_338, NESG target HT65A/OCSP target hs00387_244_338/SGC-toronto
Descriptor: NFATC2-interacting protein
Authors:Wu, B, Yee, A, Houliston, S, Doherty, R, Semesi, A, Dhe-Paganon, S, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2010-12-03
Release date:2010-12-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Human NFATC2IP ubiquitin-like domains
To be Published
2LF0
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Solution structure of sf3636, a two-domain unknown function protein from Shigella flexneri 2a, determined by joint refinement of NMR, residual dipolar couplings and small-angle X-ray scattering, NESG target SfR339/OCSP target sf3636
Descriptor: Uncharacterized protein yibL
Authors:Wu, B, Lemak, A, Yee, A, Lee, H, Gutmanas, A, Semesi, A, Garcia, M, Fang, X, Wang, Y, Prestegard, J.H, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2011-06-27
Release date:2011-07-13
Last modified:2024-05-15
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure of sf3636, a two-domain unknown function protein from Shigella flexneri 2a, determined by joint refinement of NMR, residual dipolar couplings and small-angle X-ray scattering
To be Published
6KIT
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BU of 6kit by Molmil
Structure of mouse CXorf40A, Selenomethionine derivative
Descriptor: SULFATE ION, Uncharacterized protein CXorf40 homolog
Authors:Wu, B.X.
Deposit date:2019-07-19
Release date:2020-07-22
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structure of mouse CXorf40A, Selenomethionine derivative
To Be Published
2F1Q
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BU of 2f1q by Molmil
Solution structure of a DNA Holliday Junction
Descriptor: 42-MER, COBALT HEXAMMINE(III)
Authors:Wu, B, van Buuren, B.N.M, Schleucher, J, Wijmenga, S.S.
Deposit date:2005-11-15
Release date:2007-03-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of a four-way junction in the presence of cobalt ion
TO BE PUBLISHED
5HO4
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BU of 5ho4 by Molmil
Crystal structure of hnRNPA2B1 in complex with 10-mer RNA
Descriptor: Heterogeneous nuclear ribonucleoproteins A2/B1, RNA (5'-R(*AP*AP*GP*GP*AP*CP*UP*AP*GP*C)-3')
Authors:Wu, B.X, Su, S.C, Gan, J.H, Ma, J.B.
Deposit date:2016-01-19
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nat Commun, 9, 2018
1P5Q
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BU of 1p5q by Molmil
Crystal Structure of FKBP52 C-terminal Domain
Descriptor: FK506-binding protein 4, SULFATE ION
Authors:Wu, B, Li, P, Lou, Z, Shu, C, Ding, Y, Shen, B, Rao, Z.
Deposit date:2003-04-28
Release date:2004-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
2YII
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BU of 2yii by Molmil
Manipulating the regioselectivity of phenylalanine aminomutase: new insights into the reaction mechanism of MIO-dependent enzymes from structure-guided directed evolution
Descriptor: BETA-MERCAPTOETHANOL, FORMIC ACID, GLYCEROL, ...
Authors:Wu, B, Szymanski, W, Wybenga, G.G, Heberling, M.M, Bartsch, S, Wildeman, S, Poelarends, G.J, Feringa, B.L, Dijkstra, B.W, Janssen, D.B.
Deposit date:2011-05-13
Release date:2011-11-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Mechanism-Inspired Engineering of Phenylalanine Aminomutase for Enhanced Beta-Regioselective Asymmetric Amination of Cinnamates.
Angew.Chem.Int.Ed.Engl., 51, 2012
2AYJ
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BU of 2ayj by Molmil
Solution structure of 50S ribosomal protein L40e from Sulfolobus solfataricus
Descriptor: 50S ribosomal protein L40e, ZINC ION
Authors:Wu, B, Yee, A, Lukin, J, Lemak, A, Semesi, A, Ramelot, T, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-09-07
Release date:2006-08-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ribosomal protein L40E, a unique C4 zinc finger protein encoded by archaeon Sulfolobus solfataricus
Protein Sci., 17, 2008
5AC3
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BU of 5ac3 by Molmil
Crystal structure of PAM12A
Descriptor: ACETIC ACID, CADMIUM ION, PEPTIDE AMIDASE
Authors:Wu, B, Wijma, H.J, Song, L, Rozeboom, H.J, Poloni, C, Tian, Y, Arif, M.I, Nuijens, T, Quadflieg, P.J.L.M, Szymanski, W, Feringa, B.L, Janssen, D.B.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Versatile Peptide C-Terminal Functionalization Via a Computationally Peptide Amidase
Acs Catalysis, 2016
3ODU
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BU of 3odu by Molmil
The 2.5 A structure of the CXCR4 chemokine receptor in complex with small molecule antagonist IT1t
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, ...
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-11
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010
1Q1C
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BU of 1q1c by Molmil
Crystal structure of N(1-260) of human FKBP52
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-07-18
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
1D2B
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THE MMP-INHIBITORY, N-TERMINAL DOMAIN OF HUMAN TISSUE INHIBITOR OF METALLOPROTEINASES-1 (N-TIMP-1), SOLUTION NMR, 29 STRUCTURES
Descriptor: Metalloproteinase inhibitor 1
Authors:Wu, B, Arumugam, S, Semenchenko, V, Brew, K, Van Doren, S.R.
Deposit date:1999-09-22
Release date:1999-12-22
Last modified:2022-03-23
Method:SOLUTION NMR
Cite:NMR structure of tissue inhibitor of metalloproteinases-1 implicates localized induced fit in recognition of matrix metalloproteinases.
J.Mol.Biol., 295, 2000
3J6J
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BU of 3j6j by Molmil
3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Descriptor: Mitochondrial antiviral-signaling protein
Authors:Wu, B, Peisley, A, Li, Z, Egelman, E, Walz, T, Penczek, P, Hur, S.
Deposit date:2014-03-13
Release date:2014-07-30
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
3OE8
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Crystal structure of the CXCR4 chemokine receptor in complex with a small molecule antagonist IT1t in P1 spacegroup
Descriptor: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, Lysozyme Chimera
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-12
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010
1QZ2
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BU of 1qz2 by Molmil
Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90
Descriptor: 5-mer peptide from Heat shock protein HSP 90, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Liu, Y, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-09-15
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex.
Proc.Natl.Acad.Sci.USA, 101, 2004
5EIM
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YTH domain-containing protein mmi1 and RNA complex
Descriptor: RNA (5'-R(*AP*UP*UP*AP*AP*AP*CP*A)-3'), YTH domain-containing protein mmi1
Authors:Wu, B.X, Xu, J.H, Su, S.C, Ma, J.B.
Deposit date:2015-10-30
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural insights into the specific recognition of DSR by the YTH domain containing protein Mmi1
Biochem. Biophys. Res. Commun., 491, 2017
5EIP
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apo-structure of YTH domain of SpMmi1
Descriptor: YTH domain-containing protein mmi1
Authors:Wu, B.X, Xu, J.H, Su, S.C, Ma, J.B.
Deposit date:2015-10-30
Release date:2016-01-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural insights into the specific recognition of DSR by the YTH domain containing protein Mmi1
Biochem. Biophys. Res. Commun., 491, 2017
3OE9
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Crystal structure of the chemokine CXCR4 receptor in complex with a small molecule antagonist IT1t in P1 spacegroup
Descriptor: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, Lysozyme Chimera
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-12
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010

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