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PDB: 315 results

5WWF
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BU of 5wwf by Molmil
Crystal structure of hnRNPA2B1 in complex with RNA
Descriptor: Heterogeneous nuclear ribonucleoproteins A2/B1, RNA
Authors:Wu, B.X, Su, S.C, Ma, J.B.
Deposit date:2017-01-01
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nat Commun, 9, 2018
5AC3
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BU of 5ac3 by Molmil
Crystal structure of PAM12A
Descriptor: ACETIC ACID, CADMIUM ION, PEPTIDE AMIDASE
Authors:Wu, B, Wijma, H.J, Song, L, Rozeboom, H.J, Poloni, C, Tian, Y, Arif, M.I, Nuijens, T, Quadflieg, P.J.L.M, Szymanski, W, Feringa, B.L, Janssen, D.B.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Versatile Peptide C-Terminal Functionalization Via a Computationally Peptide Amidase
Acs Catalysis, 2016
4P4H
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BU of 4p4h by Molmil
Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain
Descriptor: Mitochondrial antiviral-signaling protein, Probable ATP-dependent RNA helicase DDX58, Ubiquitin-60S ribosomal protein L40
Authors:Wu, B, Hur, S.
Deposit date:2014-03-12
Release date:2014-07-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
2GRG
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BU of 2grg by Molmil
Solution NMR Structure of Protein YNR034W-A from Saccharomyces cerevisiae. Northeast Structural Genomics Consortium Target YT727; Ontario Center for Structural Proteomics Target yst6499.
Descriptor: hypothetical protein; Ynr034w-ap
Authors:Wu, B, Yee, A, Ramelot, T, Lemak, A, Semesi, A, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-04-24
Release date:2006-05-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein yst6499 from Saccharomyces cerevisiae/ Northeast Structural Genomics Consortium Target YT727/ Ontario Center for Structural Proteomics Target yst6499
To be Published
2YII
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BU of 2yii by Molmil
Manipulating the regioselectivity of phenylalanine aminomutase: new insights into the reaction mechanism of MIO-dependent enzymes from structure-guided directed evolution
Descriptor: BETA-MERCAPTOETHANOL, FORMIC ACID, GLYCEROL, ...
Authors:Wu, B, Szymanski, W, Wybenga, G.G, Heberling, M.M, Bartsch, S, Wildeman, S, Poelarends, G.J, Feringa, B.L, Dijkstra, B.W, Janssen, D.B.
Deposit date:2011-05-13
Release date:2011-11-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Mechanism-Inspired Engineering of Phenylalanine Aminomutase for Enhanced Beta-Regioselective Asymmetric Amination of Cinnamates.
Angew.Chem.Int.Ed.Engl., 51, 2012
1P5Q
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BU of 1p5q by Molmil
Crystal Structure of FKBP52 C-terminal Domain
Descriptor: FK506-binding protein 4, SULFATE ION
Authors:Wu, B, Li, P, Lou, Z, Shu, C, Ding, Y, Shen, B, Rao, Z.
Deposit date:2003-04-28
Release date:2004-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
1Q1C
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BU of 1q1c by Molmil
Crystal structure of N(1-260) of human FKBP52
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-07-18
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex
Proc.Natl.Acad.Sci.USA, 101, 2004
1QZ2
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BU of 1qz2 by Molmil
Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90
Descriptor: 5-mer peptide from Heat shock protein HSP 90, FK506-binding protein 4
Authors:Wu, B, Li, P, Lou, Z, Liu, Y, Ding, Y, Shu, C, Shen, B, Rao, Z.
Deposit date:2003-09-15
Release date:2004-06-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:3D structure of human FK506-binding protein 52: Implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex.
Proc.Natl.Acad.Sci.USA, 101, 2004
2F1Q
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BU of 2f1q by Molmil
Solution structure of a DNA Holliday Junction
Descriptor: 42-MER, COBALT HEXAMMINE(III)
Authors:Wu, B, van Buuren, B.N.M, Schleucher, J, Wijmenga, S.S.
Deposit date:2005-11-15
Release date:2007-03-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of a four-way junction in the presence of cobalt ion
TO BE PUBLISHED
3ODU
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BU of 3odu by Molmil
The 2.5 A structure of the CXCR4 chemokine receptor in complex with small molecule antagonist IT1t
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, ...
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-11
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010
1NEI
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BU of 1nei by Molmil
Solution NMR Structure of Protein yoaG from Escherichia coli. Ontario Centre for Structural Proteomics Target EC0264_1_60; Northeast Structural Genomics Consortium Target ET94.
Descriptor: hypothetical protein yoaG
Authors:Wu, B, Pineda-Lucena, A, Yee, A, Cort, J, Kennedy, M.A, Edwards, A.M, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-12-11
Release date:2004-04-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein dimer encoded by the Yoag gene from Escherichia coli
To be published
3J6J
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BU of 3j6j by Molmil
3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Descriptor: Mitochondrial antiviral-signaling protein
Authors:Wu, B, Peisley, A, Li, Z, Egelman, E, Walz, T, Penczek, P, Hur, S.
Deposit date:2014-03-13
Release date:2014-07-30
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
1D2B
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BU of 1d2b by Molmil
THE MMP-INHIBITORY, N-TERMINAL DOMAIN OF HUMAN TISSUE INHIBITOR OF METALLOPROTEINASES-1 (N-TIMP-1), SOLUTION NMR, 29 STRUCTURES
Descriptor: Metalloproteinase inhibitor 1
Authors:Wu, B, Arumugam, S, Semenchenko, V, Brew, K, Van Doren, S.R.
Deposit date:1999-09-22
Release date:1999-12-22
Last modified:2022-03-23
Method:SOLUTION NMR
Cite:NMR structure of tissue inhibitor of metalloproteinases-1 implicates localized induced fit in recognition of matrix metalloproteinases.
J.Mol.Biol., 295, 2000
3OE8
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BU of 3oe8 by Molmil
Crystal structure of the CXCR4 chemokine receptor in complex with a small molecule antagonist IT1t in P1 spacegroup
Descriptor: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, Lysozyme Chimera
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-12
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010
2LNW
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BU of 2lnw by Molmil
Identification and structural basis for a novel interaction between Vav2 and Arap3
Descriptor: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3, Guanine nucleotide exchange factor VAV2
Authors:Wu, B, Zhang, J, Wu, J, Shi, Y.
Deposit date:2012-01-05
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification and structural basis for a novel interaction between Vav2 and Arap3.
J.Struct.Biol., 180, 2012
8IL4
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BU of 8il4 by Molmil
Crystal structure of alcohol oxidase ParAOX(M59V/Q60P/R61N/F101S/N602H)(Polyporus arcularius)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GMC oxidoreductase
Authors:Wu, B, Wang, Y.
Deposit date:2023-03-01
Release date:2024-03-06
Method:X-RAY DIFFRACTION (3.35500073 Å)
Cite:Crystal structure of alcohol oxidase ParAOX(M59V/Q60P/R61N/F101S/N602H)(Polyporus arcularius)
To Be Published
6LQZ
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BU of 6lqz by Molmil
Solution structure of Taf14ET-Sth1EBMC
Descriptor: Nuclear protein STH1/NPS1, Transcription initiation factor TFIID subunit 14
Authors:Wu, B, Chen, G, Chen, Y.
Deposit date:2020-01-15
Release date:2020-08-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation.
Nat Commun, 11, 2020
3OE9
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BU of 3oe9 by Molmil
Crystal structure of the chemokine CXCR4 receptor in complex with a small molecule antagonist IT1t in P1 spacegroup
Descriptor: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate, C-X-C chemokine receptor type 4, Lysozyme Chimera
Authors:Wu, B, Mol, C.D, Han, G.W, Katritch, V, Chien, E.Y.T, Liu, W, Cherezov, V, Stevens, R.C, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
Deposit date:2010-08-12
Release date:2010-10-27
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science, 330, 2010
2AYJ
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BU of 2ayj by Molmil
Solution structure of 50S ribosomal protein L40e from Sulfolobus solfataricus
Descriptor: 50S ribosomal protein L40e, ZINC ION
Authors:Wu, B, Yee, A, Lukin, J, Lemak, A, Semesi, A, Ramelot, T, Kennedy, M, Edward, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-09-07
Release date:2006-08-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ribosomal protein L40E, a unique C4 zinc finger protein encoded by archaeon Sulfolobus solfataricus
Protein Sci., 17, 2008
5EIP
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BU of 5eip by Molmil
apo-structure of YTH domain of SpMmi1
Descriptor: YTH domain-containing protein mmi1
Authors:Wu, B.X, Xu, J.H, Su, S.C, Ma, J.B.
Deposit date:2015-10-30
Release date:2016-01-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural insights into the specific recognition of DSR by the YTH domain containing protein Mmi1
Biochem. Biophys. Res. Commun., 491, 2017
8IL5
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BU of 8il5 by Molmil
Crystal structure of alcohol oxidase PcAOX(M59V/Q60P/R61N)(Phanerochaete chrysosporium)
Descriptor: Alcohol oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Wu, B, Wang, Y.
Deposit date:2023-03-01
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.50006032 Å)
Cite:Crystal structure of alcohol oxidase PcAOX(M59V/Q60P/R61N)(Phanerochaete chrysosporium)
To Be Published
5EIM
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BU of 5eim by Molmil
YTH domain-containing protein mmi1 and RNA complex
Descriptor: RNA (5'-R(*AP*UP*UP*AP*AP*AP*CP*A)-3'), YTH domain-containing protein mmi1
Authors:Wu, B.X, Xu, J.H, Su, S.C, Ma, J.B.
Deposit date:2015-10-30
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural insights into the specific recognition of DSR by the YTH domain containing protein Mmi1
Biochem. Biophys. Res. Commun., 491, 2017
4GL2
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BU of 4gl2 by Molmil
Structural Basis for dsRNA duplex backbone recognition by MDA5
Descriptor: Interferon-induced helicase C domain-containing protein 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3'), ...
Authors:Wu, B, Hur, S.
Deposit date:2012-08-13
Release date:2013-01-09
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (3.557 Å)
Cite:Structural Basis for dsRNA Recognition, Filament Formation, and Antiviral Signal Activation by MDA5.
Cell(Cambridge,Mass.), 152, 2013
5EN1
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BU of 5en1 by Molmil
Crystal structure of hnRNPA2B1 in complex with RNA
Descriptor: Heterogeneous nuclear ribonucleoproteins A2/B1, RNA (5'-R(*AP*GP*GP*AP*CP*UP*G)-3')
Authors:Wu, B.X, Su, S.C, Ma, J.B.
Deposit date:2015-11-09
Release date:2016-11-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1
Nat Commun, 2018
3KUY
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BU of 3kuy by Molmil
DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent
Descriptor: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2009-11-28
Release date:2010-01-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent
Nucleic Acids Res., 38, 2010

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