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PDB: 94 results

7JNO
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BU of 7jno by Molmil
X-ray crystallographic structure of the NS3 helicase domain from Tick-borne encephalitis virus
Descriptor: Serine protease NS3
Authors:Weeks, S.D, Munwar, A, Lucero, H.A, Bandara, A, Munawar, A.H.
Deposit date:2020-08-05
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of Tickborne Encephalitis Virus NS3-Helicase and implications for drug design
To Be Published
7QCF
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BU of 7qcf by Molmil
X-ray crystallographic structure of E. coli K-12 glycyl-tRNA synthetase alpha subunit (glyQ)
Descriptor: Glycine--tRNA ligase alpha subunit
Authors:Weeks, S.D, Munawar, A.H.
Deposit date:2021-11-23
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of E. coli K-12 glycyl-tRNA synthetase alpha subunit (glyQ)
To Be Published
3O65
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BU of 3o65 by Molmil
Crystal structure of a Josephin-ubiquitin complex: Evolutionary restraints on ataxin-3 deubiquitinating activity
Descriptor: Putative ataxin-3-like protein, SODIUM ION, Ubiquitin
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2010-07-28
Release date:2010-11-24
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of a Josephin-Ubiquitin Complex: EVOLUTIONARY RESTRAINTS ON ATAXIN-3 DEUBIQUITINATING ACTIVITY.
J.Biol.Chem., 286, 2011
4G2U
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BU of 4g2u by Molmil
Crystal Structure Analysis of Ostertagia ostertagi ASP-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ancylostoma-secreted protein-like protein, SULFATE ION
Authors:Weeks, S.D, Borloo, J, Geldhof, P, Vercruysse, J, Strelkov, S.V.
Deposit date:2012-07-13
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of Ostertagia ostertagi ASP-1: insights into disulfide-mediated cyclization and dimerization
Acta Crystallogr.,Sect.D, 69, 2013
4JUS
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BU of 4jus by Molmil
Crystal structure of a fragment of Human HSPB6
Descriptor: GLYCEROL, Heat shock protein beta-6
Authors:Weeks, S.D, Baranova, E.V, Beelen, S, Heirbaut, M, Gusev, N.B, Strelkov, S.V.
Deposit date:2013-03-25
Release date:2014-02-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular structure and dynamics of the dimeric human small heat shock protein HSPB6.
J.Struct.Biol., 185, 2014
4JUT
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BU of 4jut by Molmil
Crystal structure of a mutant fragment of Human HSPB6
Descriptor: GLYCEROL, Heat shock protein beta-6
Authors:Weeks, S.D, Baranova, E.V, Beelen, S, Heirbaut, M, Gusev, N.B, Strelkov, S.V.
Deposit date:2013-03-25
Release date:2014-02-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.196 Å)
Cite:Molecular structure and dynamics of the dimeric human small heat shock protein HSPB6.
J.Struct.Biol., 185, 2014
3H7P
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BU of 3h7p by Molmil
Crystal structure of K63-linked di-ubiquitin
Descriptor: CADMIUM ION, Ubiquitin
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
3H7S
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BU of 3h7s by Molmil
Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture
Descriptor: Ubiquitin, ZINC ION
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
6FPC
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BU of 6fpc by Molmil
Structure of the PRO-PRO endopeptidase (PPEP-2) from Paenibacillus alvei
Descriptor: CADMIUM ION, PRO-PRO endopeptidase, SULFATE ION, ...
Authors:Weeks, S.D, Klychnikov, O.I, Hensbergen, P.J, Strelkov, S.V.
Deposit date:2018-02-09
Release date:2018-05-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Discovery of a new Pro-Pro endopeptidase, PPEP-2, provides mechanistic insights into the differences in substrate specificity within the PPEP family.
J. Biol. Chem., 293, 2018
6Z4U
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BU of 6z4u by Molmil
X-ray Crystallographic Structure of Orf9b from SARS-CoV-2
Descriptor: POLYETHYLENE GLYCOL (N=34), Protein 9b
Authors:Weeks, S.D, De Graef, S, Munawar, A.
Deposit date:2020-05-25
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:X-ray Crystallographic Structure of Orf9b from SARS-CoV-2
To Be Published
6ZRV
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BU of 6zrv by Molmil
Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F) in Complex with an Inhibitory Nanobody (VHH-s-a93, Nb93)
Descriptor: Plasminogen activator inhibitor 1, VHH-s-a93 (Nb93)
Authors:Sillen, M, Weeks, S.D, Strelkov, S.V, Declerck, P.J.
Deposit date:2020-07-15
Release date:2020-08-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural Insights into the Mechanism of a Nanobody That Stabilizes PAI-1 and Modulates Its Activity.
Int J Mol Sci, 21, 2020
8HFN
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BU of 8hfn by Molmil
Crystal Structure of Mycobacterium smegmatis MshC in Complex with Compound 7b
Descriptor: CALCIUM ION, L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, N-[(3M)-3-(6-methoxypyridin-3-yl)benzene-1-sulfonyl]-L-cysteinamide, ...
Authors:Pang, L, Weeks, S.D, Strelkov, S.V.
Deposit date:2022-11-11
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Basis of Cysteine Ligase MshC Inhibition by Cysteinyl-Sulfonamides.
Int J Mol Sci, 23, 2022
8HFM
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BU of 8hfm by Molmil
Crystal Structure of Mycobacterium smegmatis MshC
Descriptor: CALCIUM ION, L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, ZINC ION
Authors:Pang, L, Weeks, S.D, Strelkov, S.V.
Deposit date:2022-11-11
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural Basis of Cysteine Ligase MshC Inhibition by Cysteinyl-Sulfonamides.
Int J Mol Sci, 23, 2022
8HFO
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BU of 8hfo by Molmil
Crystal Structure of Mycobacterium smegmatis MshC in Complex with Compound 7d
Descriptor: CALCIUM ION, L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, N-[(3M)-3-(thiophen-2-yl)benzene-1-sulfonyl]-L-cysteinamide, ...
Authors:Pang, L, Weeks, S.D, Strelkov, S.V.
Deposit date:2022-11-11
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural Basis of Cysteine Ligase MshC Inhibition by Cysteinyl-Sulfonamides.
Int J Mol Sci, 23, 2022
7YP8
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BU of 7yp8 by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Leucyl-sulfamoyl 3-deazaadenosine
Descriptor: 1,2-ETHANEDIOL, Leucine--tRNA ligase, MAGNESIUM ION, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2022-08-02
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The essential role of a structured water in base recognition of Class II aminoacyl-tRNA synthetases
To be published
6PGV
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BU of 6pgv by Molmil
Human Josephin-2 in complex with ubiquitin
Descriptor: ETHANAMINE, Josephin-2, Polyubiquitin-B
Authors:Grasty, K.C, Weeks, S.D, Loll, P.J.
Deposit date:2019-06-24
Release date:2019-10-23
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the activity and regulation of human Josephin-2
J.Struct.Biol., 3, 2019
5LUM
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BU of 5lum by Molmil
Alpha-crystallin domain of human HSPB6 patched with its N-terminal peptide
Descriptor: Heat shock protein beta-6, SULFATE ION
Authors:Sluchanko, N.N, Beelen, S, Kulikova, A.A, Weeks, S.D, Antson, A.A, Gusev, N.B, Strelkov, S.V.
Deposit date:2016-09-09
Release date:2017-02-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for the Interaction of a Human Small Heat Shock Protein with the 14-3-3 Universal Signaling Regulator.
Structure, 25, 2017
1M8V
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BU of 1m8v by Molmil
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Descriptor: 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3', CALCIUM ION, PUTATIVE SNRNP SM-LIKE PROTEIN, ...
Authors:Thore, S, Mayer, C, Sauter, C, Weeks, S, Suck, D.
Deposit date:2002-07-26
Release date:2003-02-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Pyrococcus abyssii Sm core and its Complex with RNA: Common Features of RNA-binding in Archaea and Eukarya
J.Biol.Chem., 278, 2003
3VFK
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BU of 3vfk by Molmil
The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ...
Authors:Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J.
Deposit date:2012-01-09
Release date:2013-01-09
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
Acta Crystallogr.,Sect.D, 69, 2013
3VFJ
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BU of 3vfj by Molmil
The structure of monodechloro-teicoplanin in complex with its ligand, using MBP as a ligand carrier
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ...
Authors:Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J.
Deposit date:2012-01-09
Release date:2013-01-09
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
Acta Crystallogr.,Sect.D, 69, 2013
6Q8A
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BU of 6q8a by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with 5'-O-(N-(L-Leucyl)-Sulfamoyl)Cytidine
Descriptor: 5'-O-(N-(L-Leucyl)-Sulfamoyl)Cytidine, Leucine--tRNA ligase, MAGNESIUM ION, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2018-12-14
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases.
Eur.J.Med.Chem., 173, 2019
6Q89
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BU of 6q89 by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with the Intermediate Analog 5'-O-(N-(L-Leucyl)-Sulfamoyl)Adenosine
Descriptor: 1,2-ETHANEDIOL, 5'-O-(L-leucylsulfamoyl)adenosine, Leucine--tRNA ligase, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2018-12-14
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases.
Eur.J.Med.Chem., 173, 2019
6Q8C
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BU of 6q8c by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with 5'-O-(N-(L-Leucyl)-Sulfamoyl)Uridine
Descriptor: 1,2-ETHANEDIOL, 5'-O-(N-(L-Leucyl)-Sulfamoyl)Uridine, Leucine--tRNA ligase, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2018-12-14
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases.
Eur.J.Med.Chem., 173, 2019
6Q8B
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BU of 6q8b by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with 5'-O-(N-(L-Leucyl)-Sulfamoyl)N3-methyluridine
Descriptor: 1,2-ETHANEDIOL, Leucine--tRNA ligase, MAGNESIUM ION, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2018-12-14
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases.
Eur.J.Med.Chem., 173, 2019
6SJC
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BU of 6sjc by Molmil
Structure of T. thermophilus AspRS in Complex with 5'-O-(N-(L-aspartyl)-sulfamoyl)adenosine
Descriptor: 5'-O-(L-alpha-aspartylsulfamoyl)adenosine, Aspartate--tRNA(Asp) ligase
Authors:De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2019-08-13
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural Insights into the Binding of Natural Pyrimidine-Based Inhibitors of Class II Aminoacyl-tRNA Synthetases.
Acs Chem.Biol., 15, 2020

 

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