3VFK

The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier

Summary for 3VFK

Related1JW4 3RUN 3RUL 3RUM 3VFJ
Related PRD IDPRD_000882
Descriptorubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala, MonodeChloro- Teicoplanin A2-2, D-GLUCOSAMINE, ... (7 entities in total)
Functional Keywordsteicoplanin, acetylation of cyteine with iodoacetate modification, sugar binding protein-antibiotic complex, sugar binding protein/antibiotic
Biological sourceHomo sapiens (human)
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Cellular locationUbiquitin: Cytoplasm (By similarity) P0CG48
Total number of polymer chains2
Total molecular weight10877.63
Authors
Economou, N.J.,Weeks, S.D.,Grasty, K.C.,Loll, P.J. (deposition date: 2012-01-09, release date: 2013-01-09, Last modification date: 2013-06-19)
Primary citation
Economou, N.J.,Zentner, I.J.,Lazo, E.,Jakoncic, J.,Stojanoff, V.,Weeks, S.D.,Grasty, K.C.,Cocklin, S.,Loll, P.J.
Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
Acta Crystallogr.,Sect.D, 69:520-533, 2013
PubMed: 23519660 (PDB entries with the same primary citation)
DOI: 10.1107/S0907444912050469
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.8 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.31217003.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report