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PDB: 653 results

6M6K
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BU of 6m6k by Molmil
NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CCTG repeats
Descriptor: DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3'), SODIUM ION
Authors:Wan, L, Lam, S.L, Guo, P.
Deposit date:2020-03-15
Release date:2020-07-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell.
Chem.Commun.(Camb.), 56, 2020
5JMV
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BU of 5jmv by Molmil
Crystal structure of mjKae1-pfuPcc1 complex
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein, ...
Authors:Wan, L, Sicheri, F.
Deposit date:2016-04-29
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3864696 Å)
Cite:Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.
Nucleic Acids Res., 44, 2016
6C80
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BU of 6c80 by Molmil
Crystal structure of a flax cytokinin oxidase
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Wan, L, Williams, S, Kobe, B.
Deposit date:2018-01-23
Release date:2018-06-20
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural and functional insights into the modulation of the activity of a flax cytokinin oxidase by flax rust effector AvrL567-A.
Mol. Plant Pathol., 20, 2019
7YF7
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BU of 7yf7 by Molmil
NMR solution structures of the DNA minidumbbell formed by two ATTTT repeats
Descriptor: DNA (5'-D(*AP*TP*TP*TP*TP*AP*TP*TP*TP*T)-3'), SODIUM ION
Authors:Wan, L, Li, J, Guo, P.
Deposit date:2022-07-07
Release date:2023-01-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Structures of ATTTT and ATTTC Pentanucleotide Repeats Associated with SCA37 and FAMEs.
Acs Chem Neurosci, 14, 2023
6M6J
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BU of 6m6j by Molmil
NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats
Descriptor: DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3'), SODIUM ION
Authors:Wan, L, Lam, S.L, Guo, P.
Deposit date:2020-03-15
Release date:2020-07-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell.
Chem.Commun.(Camb.), 56, 2020
4C6S
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BU of 4c6s by Molmil
Crystal structure of the TIR domain from the Arabidopsis Thaliana disease resistance protein RRS1
Descriptor: GLYCEROL, PROBABLE WRKY TRANSCRIPTION FACTOR 52, SODIUM ION, ...
Authors:Wan, L, Williams, S.J, Sohn, K.H, Bernoux, M, Ma, Y, Segonzac, C, Ve, T, Sarris, P, Ericsson, D.J, Saucet, S.B, Zhang, X, Parker, J, Dodds, P.N, Jones, J.D.G, Kobe, B.
Deposit date:2013-09-19
Release date:2014-05-28
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Structural Basis for Assembly and Function of a Heterodimeric Plant Immune Receptor.
Science, 344, 2014
5J26
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BU of 5j26 by Molmil
Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant
Descriptor: Tumor suppressor p53-binding protein 1, Ubiquitin Variant i53
Authors:Wan, L, Canny, M, Juang, Y.C, Durocher, D, Sicheri, F.
Deposit date:2016-03-29
Release date:2016-12-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5047 Å)
Cite:A genetically encoded inhibitor of 53BP1 to stimulate homology-based gene editing
To Be Published
7E4E
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BU of 7e4e by Molmil
NMR solution structures of DNA minidumbbell containing a N1-methyladenine
Descriptor: DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3'), SODIUM ION
Authors:Wan, L, Guo, P, Lam, S.L.
Deposit date:2021-02-11
Release date:2021-04-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell.
Int J Mol Sci, 22, 2021
7D0X
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BU of 7d0x by Molmil
NMR solution structures of the DNA minidumbbell formed by 5'-mCTTGXmCTTG-3'
Descriptor: DNA (5'-D(*(MCY)P*TP*TP*GP*(3DR)P*(5CM)P*TP*TP*G)-3'), SODIUM ION
Authors:Wan, L, Guo, P, Lam, S.L.
Deposit date:2020-09-12
Release date:2021-02-03
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:5-Methylcytosine Substantially Enhances the Thermal Stability of DNA Minidumbbells.
Chemistry, 27, 2021
7D0Y
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BU of 7d0y by Molmil
NMR solution structures of the DNA minidumbbell formed by two CmCTG repeats at pH 5
Descriptor: DNA (5'-D(*(DCZ)P*(5CM)P*TP*GP*CP*(5CM)P*TP*G)-3'), SODIUM ION
Authors:Wan, L, Guo, P, Lam, S.L.
Deposit date:2020-09-12
Release date:2021-02-03
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:5-Methylcytosine Substantially Enhances the Thermal Stability of DNA Minidumbbells.
Chemistry, 27, 2021
8TQO
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BU of 8tqo by Molmil
Eukaryotic translation initiation factor 2B tetramer
Descriptor: Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, Translation initiation factor eIF-2B subunit epsilon, ...
Authors:Wang, L, Lawrence, R, Sangwan, S, Anand, A, Shoemaker, S, Deal, A, Marqusee, S, Watler, P.
Deposit date:2023-08-08
Release date:2023-12-06
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A helical fulcrum in eIF2B coordinates allosteric regulation of stress signaling.
Nat.Chem.Biol., 20, 2024
8TQZ
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BU of 8tqz by Molmil
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Descriptor: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
Authors:Wang, L, Lawrence, R, Sangwan, S, Anand, A, Shoemaker, S, Deal, A, Marqusee, S, Watler, P.
Deposit date:2023-08-08
Release date:2023-12-06
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A helical fulcrum in eIF2B coordinates allosteric regulation of stress signaling.
Nat.Chem.Biol., 20, 2024
6LNI
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BU of 6lni by Molmil
Cryo-EM structure of amyloid fibril formed by full-length human prion protein
Descriptor: Major prion protein
Authors:Wang, L.Q, Zhao, K, Yuan, H.Y, Wang, Q, Guan, Z.Y, Tao, J, Li, X.N, Hao, M.M, Chen, J, Zhang, D.L, Zhu, H.L, Yin, P, Liu, C, Liang, Y.
Deposit date:2019-12-30
Release date:2020-06-10
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.702 Å)
Cite:Cryo-EM structure of an amyloid fibril formed by full-length human prion protein.
Nat.Struct.Mol.Biol., 27, 2020
7XJA
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BU of 7xja by Molmil
TMD masked refine map of human ClC-2
Descriptor: Chloride channel protein 2
Authors:Wang, L.
Deposit date:2022-04-15
Release date:2023-05-17
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of ClC-2 chloride channel reveal the blocking mechanism of its specific inhibitor AK-42
Nat Commun, 14, 2023
7XF5
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BU of 7xf5 by Molmil
Full length human CLC-2 channel in apo state
Descriptor: Chloride channel protein 2
Authors:Wang, L.
Deposit date:2022-04-01
Release date:2023-05-03
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of ClC-2 chloride channel reveal the blocking mechanism of its specific inhibitor AK-42
Nat Commun, 14, 2023
7RLO
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BU of 7rlo by Molmil
Structure of the human eukaryotic translation initiation factor 2B (eIF2B) in complex with a viral protein NSs
Descriptor: Non-structural protein NS-S, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Wang, L, Schoof, M, Cogan, J, Lawrence, R, Boone, M, Wuerth, J, Frost, M, Walter, P.
Deposit date:2021-07-26
Release date:2021-12-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Viral evasion of the integrated stress response through antagonism of eIF2-P binding to eIF2B.
Nat Commun, 12, 2021
7RR4
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BU of 7rr4 by Molmil
Structure of Deep-Sea Phage NrS-1 Primase-Polymerase N300 in complex with magnesium and pyrophosphate
Descriptor: MAGNESIUM ION, PYROPHOSPHATE, Primase
Authors:Wang, L, Yu, C, Sliz, P.
Deposit date:2021-08-09
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Molecular Dissection of the Primase and Polymerase Activities of Deep-Sea Phage NrS-1 Primase-Polymerase
Frontiers in Microbiology, 12, 2021
7RR3
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BU of 7rr3 by Molmil
Structure of Deep-Sea Phage NrS-1 Primase-Polymerase N300 in complex with calcium and ddCTP
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, CALCIUM ION, Primase
Authors:Wang, L, Yu, C, Sliz, P.
Deposit date:2021-08-09
Release date:2022-01-12
Last modified:2022-01-19
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Molecular Dissection of the Primase and Polymerase Activities of Deep-Sea Phage NrS-1 Primase-Polymerase.
Front Microbiol, 12, 2021
6EG9
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BU of 6eg9 by Molmil
IRAK4 in complex with Ponatinib
Descriptor: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide, COBALT (II) ION, Interleukin-1 receptor-associated kinase 4, ...
Authors:Wang, L, Wu, H.
Deposit date:2018-08-19
Release date:2019-02-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.414 Å)
Cite:Conformational flexibility and inhibitor binding to unphosphorylated interleukin-1 receptor-associated kinase 4 (IRAK4).
J.Biol.Chem., 294, 2019
4X67
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BU of 4x67 by Molmil
Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions.
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2014-12-07
Release date:2015-02-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA, 112, 2015
6LR0
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BU of 6lr0 by Molmil
structure of human bile salt exporter ABCB11
Descriptor: Bile salt export pump
Authors:Wang, L, Hou, W.T, Chen, L, Jiang, Y.L, Xu, D, Sun, L.F, Zhou, C.Z, Chen, Y.
Deposit date:2020-01-15
Release date:2020-04-15
Last modified:2023-01-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of human bile salts exporter ABCB11.
Cell Res., 30, 2020
4X6A
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BU of 4x6a by Molmil
Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, L, Chong, J, Wang, D.
Deposit date:2014-12-07
Release date:2015-02-04
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (3.96 Å)
Cite:Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA, 112, 2015
8JX6
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BU of 8jx6 by Molmil
Deep-Sea Helicase 9 (DSH9)
Descriptor: Deep-Sea Helicase 9, L(+)-TARTARIC ACID, MAGNESIUM ION
Authors:Wang, L, Liu, Z, Guo, F.
Deposit date:2023-06-30
Release date:2023-07-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Deep-Sea Helicase 9 (DSH9)
To Be Published
4U7P
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BU of 4u7p by Molmil
Crystal structure of DNMT3A-DNMT3L complex
Descriptor: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Wang, L, Guo, X, Li, J, Xiao, J, Yin, X, He, S, Wang, J, Xu, Y.
Deposit date:2014-07-31
Release date:2014-11-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.821 Å)
Cite:Structural insight into autoinhibition and histone H3-induced activation of DNMT3A
Nature, 517, 2015
6L19
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BU of 6l19 by Molmil
The crystal structure of competence or damage-inducible protein from Enterobacter asburiae
Descriptor: CHLORIDE ION, GLYCEROL, PncC family amidohydrolase, ...
Authors:Wang, L, Chen, Y, Liu, W, Lan, J, Shang, F, Xu, Y.
Deposit date:2019-09-28
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:The crystal structure of Competence or damage-inducible protein from Enterobacter asburiae
To Be Published

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