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PDB: 968 results

7DAC
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BU of 7dac by Molmil
Human RIPK3 amyloid fibril revealed by solid-state NMR
Descriptor: Receptor-interacting serine/threonine-protein kinase 3
Authors:Wu, X.L, Zhang, J, Dong, X.Q, Liu, J, Li, B, Hu, H, Wang, J, Wang, H.Y, Lu, J.X.
Deposit date:2020-10-16
Release date:2021-04-28
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The structure of a minimum amyloid fibril core formed by necroptosis-mediating RHIM of human RIPK3.
Proc.Natl.Acad.Sci.USA, 118, 2021
8G9D
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BU of 8g9d by Molmil
Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- phosphonodifluoroacetamide inositol pentakisphosphate (5-PCF2Am-InsP5), an analogue of 5-InsP7
Descriptor: (1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid, Diphosphoinositol polyphosphate phosphohydrolase 1
Authors:Zong, G, Wang, H, Shears, S.
Deposit date:2023-02-21
Release date:2024-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fluorination Influences the Bioisostery of Myo-Inositol Pyrophosphate Analogs.
Chemistry, 29, 2023
4YZF
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BU of 4yzf by Molmil
Crystal structure of the anion exchanger domain of human erythrocyte Band 3
Descriptor: 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}, Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule
Authors:Alguel, Y, Arakawa, T, Yugiri, T.K, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Suno, C.I, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A.D, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
5A16
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BU of 5a16 by Molmil
Crystal structure of Fab4201 raised against Human Erythrocyte Anion Exchanger 1
Descriptor: FAB4201 HEAVY CHAIN
Authors:Arakawa, T, Kobayashi-Yugiri, T, Alguel, Y, Weyand, S, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Ikeda-Suno, C, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-04-28
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Anion Exchanger Domain of Human Erythrocyte Band 3
Science, 350, 2015
4FJ4
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BU of 4fj4 by Molmil
Crystal structure of the protein Q9HRE7 complexed with mercury from Halobacterium salinarium at the resolution 2.1A, Northeast Structural Genomics Consortium target HsR50
Descriptor: ETHYL MERCURY ION, SODIUM ION, Uncharacterized protein
Authors:Kuzin, A, Chen, Y, Vorobiev, S.M, Seetharaman, J, Janjua, J, Xiao, R, Cunningham, K, Maglaqui, M, Owens, L.A, Wang, H, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-06-11
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Northeast Structural Genomics Consortium Target HsR50
To be Published
5ZOO
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BU of 5zoo by Molmil
Crystal structure of histone deacetylase 4 (HDAC4) in complex with a SMRT corepressor SP1 fragment
Descriptor: Histone deacetylase 4, POTASSIUM ION, SMRT corepressor SP1 fragment, ...
Authors:Park, S.Y, Hwang, H.J, Kim, J.S.
Deposit date:2018-04-13
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4.
Nucleic Acids Res., 46, 2018
2Z8M
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BU of 2z8m by Molmil
Structural basis for the catalytic mechanism of phosphothreonine lyase
Descriptor: 27.5 kDa virulence protein
Authors:Chen, L, Wang, H, Gu, L, Huang, N, Zhou, J.M, Chai, J.
Deposit date:2007-09-07
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the catalytic mechanism of phosphothreonine lyase.
Nat.Struct.Mol.Biol., 15, 2008
1VLZ
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BU of 1vlz by Molmil
UNCOUPLED PHOSPHORYLATION AND ACTIVATION IN BACTERIAL CHEMOTAXIS: THE 2.1 ANGSTROM STRUCTURE OF A THREONINE TO ISOLEUCINE MUTANT AT POSITION 87 OF CHEY
Descriptor: CHEY
Authors:Ganguli, S, Wang, H, Matsumura, P, Volz, K.
Deposit date:1995-04-21
Release date:1995-07-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Uncoupled phosphorylation and activation in bacterial chemotaxis. The 2.1-A structure of a threonine to isoleucine mutant at position 87 of CheY.
J.Biol.Chem., 270, 1995
3TYH
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BU of 3tyh by Molmil
Crystal structure of oxo-cupper clusters binding to ferric binding protein from Neisseria gonorrhoeae
Descriptor: COPPER (II) ION, FbpA protein
Authors:Chen, W.J, Wang, H.F, Zhou, C.J, Ye, D.R, Huang, J, Tan, X.S, Zhong, W.Q.
Deposit date:2011-09-26
Release date:2012-09-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of oxo-cupper clusters binding to ferric binding protein from Neisseria gonorrhoeae
To be Published
7EVP
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BU of 7evp by Molmil
Cryo-EM structure of the Gp168-beta-clamp complex
Descriptor: Beta sliding clamp, Sliding clamp inhibitor
Authors:Liu, B, Li, S, Liu, Y, Chen, H, Hu, Z, Wang, Z, Gou, L, Zhang, L, Ma, B, Wang, H, Matthews, S, Wang, Y, Zhang, K.
Deposit date:2021-05-21
Release date:2022-02-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel.
Nucleic Acids Res., 49, 2021
3J0A
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BU of 3j0a by Molmil
Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
Descriptor: Toll-like receptor 5, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Modis, Y, Zhou, K, Kanai, R, Lee, P, Wang, H.W.
Deposit date:2011-06-02
Release date:2011-12-28
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Toll-like receptor 5 forms asymmetric dimers in the absence of flagellin.
J.Struct.Biol., 177, 2012
7FH6
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BU of 7fh6 by Molmil
Friedel-Crafts alkylation enzyme CylK
Descriptor: CALCIUM ION, CHLORIDE ION, CylK, ...
Authors:Liu, L, Wang, H.Q, Xiang, Z.
Deposit date:2021-07-29
Release date:2022-02-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Basis for the Friedel-Crafts Alkylation in Cylindrocyclophane Biosynthesis
ACS Catal., 12, 2022
4Z5T
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BU of 4z5t by Molmil
The nucleosome containing human H3.5
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Urahama, T, Harada, A, Maehara, K, Horikoshi, N, Sato, K, Sato, Y, Shiraishi, K, Sugino, N, Osakabe, A, Tachiwana, H, Kagawa, W, Kimura, H, Ohkawa, Y, Kurumizaka, H.
Deposit date:2015-04-03
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin, 9, 2016
3E23
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BU of 3e23 by Molmil
Crystal structure of the RPA2492 protein in complex with SAM from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR299
Descriptor: S-ADENOSYLMETHIONINE, SULFATE ION, uncharacterized protein RPA2492
Authors:Forouhar, F, Chen, Y, Seetharaman, J, Mao, L, Xiao, R, Foote, E.L, Ciccosanti, C, Wang, H, Tong, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-08-05
Release date:2008-09-30
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the RPA2492 protein in complex with SAM from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR299
To be Published
2Z8P
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BU of 2z8p by Molmil
Structural basis for the catalytic mechanism of phosphothreonine lyase
Descriptor: (GLY)(GLU)(ALA)(TPO)(VAL)(PTR)(ALA), 27.5 kDa virulence protein
Authors:Chen, L, Wang, H, Gu, L, Huang, N, Zhou, J.M, Chai, J.
Deposit date:2007-09-07
Release date:2007-12-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the catalytic mechanism of phosphothreonine lyase.
Nat.Struct.Mol.Biol., 15, 2008
8T7H
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BU of 8t7h by Molmil
Quis-bound intermediate mGlu5
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, Metabotropic glutamate receptor 5, Nanobody 43
Authors:Krishna Kumar, K, Wang, H, Kobilka, B.K.
Deposit date:2023-06-20
Release date:2023-10-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Stepwise activation of a metabotropic glutamate receptor.
Nature, 629, 2024
8TAO
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BU of 8tao by Molmil
Quis and CDPPB bound active mGlu5
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 3-cyano-N-(1,3-diphenyl-1H-pyrazol-5-yl)benzamide, Metabotropic glutamate receptor 5, ...
Authors:Krishna Kumar, K, Wang, H, Kobilka, B.K.
Deposit date:2023-06-27
Release date:2023-10-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Stepwise activation of a metabotropic glutamate receptor.
Nature, 629, 2024
1BC9
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BU of 1bc9 by Molmil
CYTOHESIN-1/B2-1 SEC7 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: CYTOHESIN-1
Authors:Betz, S.F, Schnuchel, A, Wang, H, Olejniczak, E.T, Meadows, R.P, Fesik, S.W.
Deposit date:1998-05-06
Release date:1999-05-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the cytohesin-1 (B2-1) Sec7 domain and its interaction with the GTPase ADP ribosylation factor 1.
Proc.Natl.Acad.Sci.USA, 95, 1998
5B24
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BU of 5b24 by Molmil
The crystal structure of the nucleosome containing cyclobutane pyrimidine dimer
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Horikoshi, N, Tachiwana, H, Kagawa, W, Osakabe, A, Kurumizaka, H.
Deposit date:2015-12-31
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the nucleosome containing ultraviolet light-induced cyclobutane pyrimidine dimer
Biochem.Biophys.Res.Commun., 471, 2016
7DIE
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BU of 7die by Molmil
Crystal structure of M. penetrans Ferritin
Descriptor: FE (III) ION, Ferritin
Authors:Wang, w.m, Zhang, y, Wang, h.f.
Deposit date:2020-11-19
Release date:2021-05-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ferritin with Atypical Ferroxidase Centers Takes B-Channels as the Pathway for Fe 2+ Uptake from Mycoplasma .
Inorg.Chem., 60, 2021
2LG2
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BU of 2lg2 by Molmil
Structure of the duplex containing HNE derived (6S,8R,11S) N2-dG cyclic hemiacetal when placed opposite dT
Descriptor: (2R,5S)-5-pentyltetrahydrofuran-2-ol, DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*GP*CP*TP*AP*GP*C)-3')
Authors:Huang, H, Wang, H, Kozekova, A, Lloyd, R.S, Rizzo, C.J, Stone, M.P.
Deposit date:2011-07-19
Release date:2012-08-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ring-chain tautomerization of trans-4-hydroxynonenal derived (6S,8R,11S) gamma-hydroxy-1,N2-propano-deoxyguanosine adduct when placed opposite 2'-deoxythymidine in duplex
To be Published
3UQH
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BU of 3uqh by Molmil
Crystal structure of aba receptor pyl10 (apo)
Descriptor: Abscisic acid receptor PYL10, SULFATE ION
Authors:Sun, D.M, Wang, H.P, Wu, M.H, Zang, J.Y, Tian, C.L.
Deposit date:2011-11-20
Release date:2011-12-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of Aba Receptor Pyl10
To be Published
6L49
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H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA
Descriptor: DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H.
Deposit date:2019-10-16
Release date:2019-12-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (18.9 Å)
Cite:Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.
Structure, 28, 2020
2QLK
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BU of 2qlk by Molmil
Adenovirus AD35 fibre head
Descriptor: Fiber, GLYCEROL
Authors:Liaw, Y.-C, Amiraslanov, I, Wang, H, Lieber, A.
Deposit date:2007-07-13
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Identification of CD46 binding sites within the adenovirus serotype 35 fiber knob
J.Virol., 81, 2007
4RHP
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BU of 4rhp by Molmil
Crystal structure of human COQ9 in complex with a phospholipid, Northeast Structural Genomics Consortium Target HR5043
Descriptor: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Ubiquinone biosynthesis protein COQ9, mitochondrial
Authors:Forouhar, F, Lew, S, Seetharaman, J, Wang, H, Lee, D, Kogan, S, Maglaqui, M, Xiao, R, Everett, J.K, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG), Mitochondrial Protein Partnership (MPP)
Deposit date:2014-10-02
Release date:2014-10-22
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis.
Proc.Natl.Acad.Sci.USA, 111, 2014

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