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PDB: 13052 results

1DXJ
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BU of 1dxj by Molmil
Structure of the chitinase from jack bean
Descriptor: CLASS II CHITINASE, SULFATE ION
Authors:Hahn, M, Hennig, M, Schlesier, B, Hohne, W.
Deposit date:2000-01-10
Release date:2000-08-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Jack Bean Chitinase
Acta Crystallogr.,Sect.D, 56, 2000
1X9Z
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BU of 1x9z by Molmil
Crystal structure of the MutL C-terminal domain
Descriptor: CHLORIDE ION, DNA mismatch repair protein mutL, GLYCEROL, ...
Authors:Guarne, A, Ramon-Maiques, S, Wolff, E.M, Ghirlando, R, Hu, X, Miller, J.H, Yang, W.
Deposit date:2004-08-24
Release date:2004-10-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair
Embo J., 23, 2004
1RRV
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BU of 1rrv by Molmil
X-ray crystal structure of TDP-vancosaminyltransferase GtfD as a complex with TDP and the natural substrate, desvancosaminyl vancomycin.
Descriptor: DESVANCOSAMINYL VANCOMYCIN, GLYCEROL, GLYCOSYLTRANSFERASE GTFD, ...
Authors:Mulichak, A.M, Lu, W, Losey, H.C, Walsh, C.T, Garavito, R.M.
Deposit date:2003-12-09
Release date:2004-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Vancosaminyltransferase Gtfd from the Vancomycin Biosynthetic Pathway: Interactions with Acceptor and Nucleotide Ligands
Biochemistry, 43, 2004
5YET
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BU of 5yet by Molmil
Structure of R354_WT
Descriptor: Uncharacterized protein R354
Authors:Dou, C, Yu, M.J, Gu, Y.J, Cheng, W.
Deposit date:2017-09-19
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.806 Å)
Cite:Structural and Mechanistic Analyses Reveal a Unique Cas4-like Protein in the Mimivirus Virophage Resistance Element System.
Iscience, 3, 2018
2MRM
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BU of 2mrm by Molmil
Solution structure of the rhodanese domain of YgaP from E. coli
Descriptor: Membrane protein
Authors:Wang, W, Zhou, P, Tian, C, Wu, F.
Deposit date:2014-07-12
Release date:2014-10-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Fast conformational exchange between the sulfur-free and persulfide-bound rhodanese domain of E. coli YgaP
Biochem.Biophys.Res.Commun., 452, 2014
5YF6
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BU of 5yf6 by Molmil
Crystals structure of Classical swine fever virus NS5B (residues 1-682)
Descriptor: RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2017-09-20
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
1R33
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BU of 1r33 by Molmil
Golgi alpha-mannosidase II complex with 5-thio-D-mannopyranosylamine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-thio-alpha-D-mannopyranosylamine, ...
Authors:Kuntz, D.A, Xin, W, Kavelekar, L.M, Rose, D.R, Pinto, B.M.
Deposit date:2003-09-30
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:5-Thio-d-glycopyranosylamines and their amidinium salts as potential transition-state mimics of glycosyl hydrolases: synthesis, enzyme inhibitory activities, X-ray crystallography, and molecular modeling
TETRAHEDRON ASYMMETRY, 16, 2005
1DAJ
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BU of 1daj by Molmil
COMPARISON OF TERNARY COMPLEXES OF PNEUMOCYSTIS CARINII AND WILD TYPE HUMAN DIHYDROFOLATE REDUCTASE WITH COENZYME NADPH AND A NOVEL CLASSICAL ANTITUMOR FURO[2,3D]PYRIMIDINE ANTIFOLATE
Descriptor: DIHYDROFOLATE REDUCTASE, N-[4-[(2,4-DIAMINOFURO[2,3D]PYRIMIDIN-5-YL)METHYL]METHYLAMINO]-BENZOYL]-L-GLUTAMATE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cody, V, Galitsky, N, Luft, J.R, Pangborn, W, Gangjee, A, Devraj, R, Queener, S.F, Blakley, R.L.
Deposit date:1997-07-29
Release date:1997-12-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Comparison of ternary complexes of Pneumocystis carinii and wild-type human dihydrofolate reductase with coenzyme NADPH and a novel classical antitumor furo[2,3-d]pyrimidine antifolate.
Acta Crystallogr.,Sect.D, 53, 1997
2MVO
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BU of 2mvo by Molmil
Solution structure of the lantibiotic self-resistance lipoprotein MlbQ from Microbispora ATCC PTA-5024
Descriptor: Putative lipoprotein
Authors:Pozzi, R, Schwartz, P, Linke, D, Kulik, A, Nega, M, Wohlleben, W, Stegmann, E, Coles, M.
Deposit date:2014-10-09
Release date:2015-07-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Distinct mechanisms contribute to immunity in the lantibiotic NAI-107 producer strain Microbispora ATCC PTA-5024.
Environ Microbiol, 18, 2016
5YP1
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BU of 5yp1 by Molmil
Crystal structure of dipeptidyl peptidase IV (DPP IV) from Pseudoxanthomonas mexicana WO24
Descriptor: Dipeptidyl aminopeptidase 4, GLYCEROL
Authors:Roppongi, S, Suzuki, Y, Tateoka, C, Fuimoto, M, Morisawa, S, Iizuka, I, Nakamura, A, Honma, N, Shida, Y, Ogasawara, W, Tanaka, N, Sakamoto, Y, Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
1XQX
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BU of 1xqx by Molmil
Crystal structure of F1-mutant S105A complex with PCK
Descriptor: PHENYLALANYLMETHYLCHLORIDE, Proline iminopeptidase
Authors:Goettig, P, Brandstetter, H, Groll, M, Goehring, W, Konarev, P.V, Svergun, D.I, Huber, R, Kim, J.-S.
Deposit date:2004-10-13
Release date:2005-07-12
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum
J.Biol.Chem., 280, 2005
1XRM
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BU of 1xrm by Molmil
Crystal structure of active site F1-mutant E213Q soaked with peptide Ala-Phe
Descriptor: ALANINE, PHENYLALANINE, Proline iminopeptidase
Authors:Goettig, P, Brandstetter, H, Groll, M, Goehring, W, Konarev, P.V, Svergun, D.I, Huber, R, Kim, J.-S.
Deposit date:2004-10-15
Release date:2005-07-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum
J.Biol.Chem., 280, 2005
1R5P
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BU of 1r5p by Molmil
Crystal Structure Analysis of KaiB from PCC7120
Descriptor: circadian oscillation regulator
Authors:Garces, R.G, Wu, N, Gillon, W, Pai, E.F.
Deposit date:2003-10-12
Release date:2004-05-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
Embo J., 23, 2004
8ERZ
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BU of 8erz by Molmil
Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Aib10Gly11 turn
Descriptor: Designed miniprotein oPPalpha: Aib10Gly11 turn
Authors:Harmon, T.W, Horne, W.S.
Deposit date:2022-10-13
Release date:2023-04-05
Last modified:2023-06-28
Method:SOLUTION NMR
Cite:Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability.
Chembiochem, 24, 2023
5YIM
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BU of 5yim by Molmil
Structure of a Legionella effector
Descriptor: SdeA
Authors:Feng, Y, Dong, Y, Wang, W.
Deposit date:2017-10-05
Release date:2018-05-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.394 Å)
Cite:Structural basis of ubiquitin modification by the Legionella effector SdeA.
Nature, 557, 2018
5YJD
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BU of 5yjd by Molmil
Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3
Descriptor: CALCIUM ION, Csm3
Authors:Zhao, Y.Q, Gu, Y.J, Zhu, X.F, Cheng, W.
Deposit date:2017-10-10
Release date:2018-10-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3 and Csm6
To Be Published
1R9Q
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BU of 1r9q by Molmil
structure analysis of ProX in complex with proline betaine
Descriptor: 1,1-DIMETHYL-PROLINIUM, Glycine betaine-binding periplasmic protein, UNKNOWN ATOM OR ION
Authors:Schiefner, A, Breed, J, Bosser, L, Kneip, S, Gade, J, Holtmann, G, Diederichs, K, Welte, W, Bremer, E.
Deposit date:2003-10-30
Release date:2004-02-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Cation-pi Interactions as Determinants for Binding of the Compatible Solutes Glycine Betaine and Proline Betaine by the Periplasmic Ligand-binding Protein ProX from Escherichia coli
J.BIOL.CHEM., 279, 2004
7GF4
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BU of 7gf4 by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with MAT-POS-590ac91e-17 (Mpro-x11560)
Descriptor: (2S)-2-(difluoromethoxy)-N-(4-methylpyridin-3-yl)propanamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.561 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
7GEN
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BU of 7gen by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with MAT-POS-1e5f28a7-1 (Mpro-x11488)
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE, methyl (2R)-2-(3-chlorophenyl)-3-[(4-methylpyridin-3-yl)amino]-3-oxopropanoate
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.529 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
8ES1
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BU of 8es1 by Molmil
Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: deltaOrn10-11 turn
Descriptor: Designed miniprotein oPPalpha: deltaOrn10-11 turn
Authors:Harmon, T.W, Horne, W.S.
Deposit date:2022-10-13
Release date:2023-04-05
Last modified:2023-06-28
Method:SOLUTION NMR
Cite:Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability.
Chembiochem, 24, 2023
7GF8
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BU of 7gf8 by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with TAT-ENA-80bfd3e5-37 (Mpro-x11587)
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE, N-(3-acetyl-2,5-dimethyl-1H-pyrrol-1-yl)-4-oxo-3,4-dihydrophthalazine-1-carboxamide
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
7GEZ
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BU of 7gez by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with ALP-POS-6747fa38-1 (Mpro-x11541)
Descriptor: 2-(4-acetylpiperazin-1-yl)-N-(isoquinolin-4-yl)acetamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
7GFK
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BU of 7gfk by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with MAT-POS-044491d2-1 (Mpro-x11764)
Descriptor: 2-(3-chloro-5-{[(1S,2S)-2-hydroxycyclopentyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
1E25
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BU of 1e25 by Molmil
The high resolution structure of PER-1 class A beta-lactamase
Descriptor: EXTENDED-SPECTRUM BETA-LACTAMASE PER-1, SULFATE ION
Authors:Tranier, S, Bouthors, A.T, Maveyraud, L, Guillet, V, Sougakoff, W, Samama, J.P.
Deposit date:2000-05-17
Release date:2000-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The High Resolution Crystal Structure for Class a Beta-Lactamase Per-1 Reveals the Bases for its Increase in Breadth of Activity
J.Biol.Chem., 275, 2000
8ERY
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BU of 8ery by Molmil
Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Asp10Asn11 turn
Descriptor: Designed miniprotein oPPalpha: Asp10Asn11 turn
Authors:Harmon, T.W, Horne, W.S.
Deposit date:2022-10-13
Release date:2023-04-05
Method:SOLUTION NMR
Cite:Protein Backbone Alteration in Non-hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability.
Chembiochem, 2023

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PDB entries from 2024-10-09

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