Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12895 results

6L7Z
DownloadVisualize
BU of 6l7z by Molmil
Solution NMR structure of the N-terminal immunoglobulin variable domain of BTNL2
Descriptor: Butyrophilin-like protein 2
Authors:Basak, A.J, Lee, W, Samanta, D, De, S.
Deposit date:2019-11-03
Release date:2020-10-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Insights into N-terminal IgV Domain of BTNL2, a T Cell Inhibitory Molecule, Suggests a Non-canonical Binding Interface for Its Putative Receptors.
J.Mol.Biol., 432, 2020
5KNT
DownloadVisualize
BU of 5knt by Molmil
Crystal structure of E. coli hypoxanthine phosphoribosyltransferase in complexed with 2-((2,3-Dihydroxypropyl)(2-(hypoxanthin-9-yl)ethyl)amino)ethylphosphonic acid
Descriptor: 2-[[(2~{S})-2,3-bis(oxidanyl)propyl]-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl]amino]ethylphosphonic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Hypoxanthine-guanine phosphoribosyltransferase, ...
Authors:Eng, W.S, Keough, D.T, Hockova, D, Janeba, Z.
Deposit date:2016-06-28
Release date:2017-07-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal Structures of Acyclic Nucleoside Phosphonates in Complex with Escherichia coli Hypoxanthine Phosphoribosyltransferase
Chemistryselect, 1, 2016
5KNV
DownloadVisualize
BU of 5knv by Molmil
E coli hypoxanthine guanine phosphoribosyltransferase in complexed with 9-[(N-Phosphonoethyl-N-phosphonobutyl)-2-aminoethyl]-hypoxanthine
Descriptor: 2-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl-(4-phosphonobutyl)amino]ethylphosphonic acid, Hypoxanthine-guanine phosphoribosyltransferase, MAGNESIUM ION
Authors:Eng, W.S, Keough, D.T, Hockova, D, Janeba, Z.
Deposit date:2016-06-28
Release date:2017-07-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.861 Å)
Cite:Crystal Structures of Acyclic Nucleoside Phosphonates in Complex with Escherichia coli Hypoxanthine Phosphoribosyltransferase
Chemistryselect, 1, 2016
2M83
DownloadVisualize
BU of 2m83 by Molmil
Solution structure of the carbohydrate binding module of the muscle glycogen-targeting subunit of Protein Phosphatase-1
Descriptor: Protein phosphatase 1 regulatory subunit 3A
Authors:Koveal, D, Page, R, Peti, W.
Deposit date:2013-05-03
Release date:2014-05-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Molecular basis for Protein Phosphatase-1 regulation by the muscle glycogen-targeting subunit GM
To be Published
8CE7
DownloadVisualize
BU of 8ce7 by Molmil
Type1 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Descriptor: Alpha-synuclein
Authors:Yang, Y, Garringer, J.H, Shi, Y, Lovestam, S, Peak-Chew, S.Y, Zhang, X.J, Kotecha, A, Bacioglu, M, Koto, A, Takao, M, Spillantini, G.M, Ghetti, B, Vidal, R, Murzin, G.A, Scheres, H.W.S, Goedert, M.
Deposit date:2023-02-01
Release date:2023-03-01
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:New SNCA mutation and structures of alpha-synuclein filaments from juvenile-onset synucleinopathy.
Acta Neuropathol, 145, 2023
3LWP
DownloadVisualize
BU of 3lwp by Molmil
Structure of H/ACA RNP bound to a substrate RNA containing 5BrdU
Descriptor: 5'-R(*GP*AP*GP*CP*GP*(BRU)P*GP*CP*GP*GP*UP*UP*U)-3, 50S ribosomal protein L7Ae, H/ACA RNA, ...
Authors:Zhou, J, Liang, B, Lv, C, Yang, W, Li, H.
Deposit date:2010-02-24
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study.
J.Mol.Biol., 401, 2010
6L8R
DownloadVisualize
BU of 6l8r by Molmil
membrane-bound PD-L1-CD
Descriptor: Programmed cell death 1 ligand 1
Authors:Maorong, W, Cao, Y, Bin, W, Bo, O.
Deposit date:2019-11-07
Release date:2020-11-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:PD-L1 degradation is regulated by electrostatic membrane association of its cytoplasmic domain.
Nat Commun, 12, 2021
4QE7
DownloadVisualize
BU of 4qe7 by Molmil
Open MthK pore structure soaked in 10 mM Ba2+/100 mM Na+
Descriptor: BARIUM ION, Calcium-gated potassium channel MthK
Authors:Guo, R, Zeng, W, Cui, H, Chen, L, Ye, S.
Deposit date:2014-05-15
Release date:2014-07-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ionic interactions of Ba2+ blockades in the MthK K+ channel
J.Gen.Physiol., 144, 2014
3LWO
DownloadVisualize
BU of 3lwo by Molmil
Structure of H/ACA RNP bound to a substrate RNA containing 5BrU
Descriptor: 5'-R(*GP*AP*GP*CP*GP*(5BU)P*GP*CP*GP*GP*UP*UP*U)-3', 50S ribosomal protein L7Ae, H/ACA RNA, ...
Authors:Zhou, J, Liang, B, Lv, C, Yang, W, Li, H.
Deposit date:2010-02-24
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.855 Å)
Cite:Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study.
J.Mol.Biol., 401, 2010
6KQV
DownloadVisualize
BU of 6kqv by Molmil
Solution Structure of the UbL Domain of USP19
Descriptor: Ubiquitin carboxyl-terminal hydrolase 19
Authors:Xue, W, Hu, H.Y.
Deposit date:2019-08-19
Release date:2020-08-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Domain interactions reveal auto-inhibition of the deubiquitinating enzyme USP19 and its activation by HSP90 in the modulation of huntingtin aggregation.
Biochem.J., 477, 2020
1U7S
DownloadVisualize
BU of 1u7s by Molmil
Crystal structure of Native Sperm Whale myoglobin from low ionic strength enviroment (Form 1)
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhang, W, Phillips Jr, G.N.
Deposit date:2004-08-04
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments.
Proteins, 70, 2008
8CEB
DownloadVisualize
BU of 8ceb by Molmil
Type2 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Descriptor: Alpha-synuclein
Authors:Yang, Y, Garringer, J.H, Shi, Y, Lovestam, S, Sew, P.C, Zhang, X.J, Kotecha, A, Bacioglu, M, Koto, A, Takao, M, Spillantini, G.M, Ghetti, B, Vidal, R, Murzin, G.A, Scheres, H.W.S, Goedert, M.
Deposit date:2023-02-01
Release date:2023-03-08
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:New SNCA mutation and structures of alpha-synuclein filaments from juvenile-onset synucleinopathy.
Acta Neuropathol, 145, 2023
2M7F
DownloadVisualize
BU of 2m7f by Molmil
The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrins Recognitions
Descriptor: Zinc metalloproteinase/disintegrin
Authors:Chuang, W, Chang, Y.
Deposit date:2013-04-22
Release date:2013-05-22
Method:SOLUTION NMR
Cite:The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
To be Published
6LND
DownloadVisualize
BU of 6lnd by Molmil
Crystal structure of transposition protein TniQ
Descriptor: ZINC ION, transposition protein TniQ
Authors:Wang, B, Xu, W, Yang, H.
Deposit date:2019-12-28
Release date:2020-02-19
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex.
Cell Res., 30, 2020
1TO0
DownloadVisualize
BU of 1to0 by Molmil
X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis
Descriptor: Hypothetical UPF0247 protein yyda
Authors:Kuzin, A.P, Edstrom, W, Vorobiev, S.M, Shastry, R, Ma, L.-C, Xiao, R, Acton, T, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-06-11
Release date:2004-07-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis
To be Published
3LTU
DownloadVisualize
BU of 3ltu by Molmil
5-SeMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
1X55
DownloadVisualize
BU of 1x55 by Molmil
Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii complexed with asparaginyl-adenylate analogue
Descriptor: 5'-O-[N-(L-ASPARAGINYL)SULFAMOYL]ADENOSINE, Asparaginyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Iwasaki, W, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2006-05-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
4PZ1
DownloadVisualize
BU of 4pz1 by Molmil
Crystal structure of a sHIP (UniProt Id: Q99XU0) mutant from Streptococcus pyogenes
Descriptor: CALCIUM ION, CHLORIDE ION, sHIP
Authors:Wisniewska, M, Happonen, L, Frick, I.-M, Bjorck, L, Streicher, W, Malmstrom, J, Wikstrom, M.
Deposit date:2014-03-28
Release date:2015-03-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Functional and structural properties of a novel protein and virulence factor (Protein sHIP) in Streptococcus pyogenes.
J.Biol.Chem., 289, 2014
1WBY
DownloadVisualize
BU of 1wby by Molmil
CRYSTAL STRUCTURES OF MURINE MHC CLASS I H-2 Db AND Kb MOLECULES IN COMPLEX WITH CTL EPITOPES FROM INFLUENZA A VIRUS: IMPLICATIONS FOR TCR REPERTOIRE SELECTION AND IMMUNODOMINANCE
Descriptor: BETA-2MICROGLOBULIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN, ...
Authors:Meijers, R, Lai, C, Yang, Y, Liu, J, Zhong, W, Wang, J, Reinherz, E.L.
Deposit date:2004-11-05
Release date:2005-01-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Murine Mhc Class I H-2 D(B) and K(B) Molecules in Complex with Ctl Epitopes from Influenza a Virus: Implications for Tcr Repertoire Selection and Immunodominance
J.Mol.Biol., 345, 2005
4Q0N
DownloadVisualize
BU of 4q0n by Molmil
Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
Descriptor: (2E)-1-(2-hydroxyphenyl)-3-(2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)prop-2-en-1-one, 1,2-ETHANEDIOL, Protein polybromo-1
Authors:Filippakopoulos, P, Picaud, S, Felletar, I, Martin, S, Monteiro, O, Fedorov, O, Chaikuad, A, Yue, W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-04-02
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
To be Published
1TZA
DownloadVisualize
BU of 1tza by Molmil
X-ray structure of Northeast Structural Genomics Consortium target SoR45
Descriptor: CACODYLATE ION, apaG protein
Authors:Kuzin, A.P, Vorobiev, S.M, Edstrom, W, Acton, T.B, Shastry, R, Ma, L.-C, Cooper, B, Xiao, R, Montelione, G, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-07-09
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray structure of Northeast Structural Genomics Consortium target SoR45
To be Published
5KNQ
DownloadVisualize
BU of 5knq by Molmil
Crystal structure of Mycobacterium tuberculosis hypoxanthine guanine phosphoribosyltransferase in complex with [3S,4R]-(4-(Guanin-9-yl)pyrrolidin-3-yl)oxymethanephosphonic acid and pyrophosphate
Descriptor: Hypoxanthine-guanine phosphoribosyltransferase, MAGNESIUM ION, PYROPHOSPHATE 2-, ...
Authors:Eng, W.S, Rejman, D, Keough, D.T, Guddat, L.W.
Deposit date:2016-06-28
Release date:2017-09-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.553 Å)
Cite:Crystal structure of Mycobacterium tuberculosis hypoxanthine guanine phosphoribosyltransferase in complex with pyrrolidine nucleoside phosphonate
To Be Published
6LXD
DownloadVisualize
BU of 6lxd by Molmil
Pri-miRNA bound DROSHA-DGCR8 complex
Descriptor: Microprocessor complex subunit DGCR8, RNA (102-mer), Ribonuclease 3, ...
Authors:Jin, W, Wang, J, Liu, C.P, Wang, H.W, Xu, R.M.
Deposit date:2020-02-10
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Basis for pri-miRNA Recognition by Drosha.
Mol.Cell, 78, 2020
2M3W
DownloadVisualize
BU of 2m3w by Molmil
Protein structure determination from a set of 4D NOESY
Descriptor: Protein S100-A1
Authors:Nowakowski, M.E, Stanek, J, Ruszczynska-Bartnik, K, Ejchart, A.O, Kozminski, W.
Deposit date:2013-01-28
Release date:2014-03-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Determination of protein structure from a set of 4D NOESY performed with non uniform sampling
To be Published
1U1W
DownloadVisualize
BU of 1u1w by Molmil
Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
Descriptor: 3-HYDROXYANTHRANILIC ACID, ACETATE ION, GLYCEROL, ...
Authors:Blankenfeldt, W, Kuzin, A.P, Skarina, T, Korniyenko, Y, Tong, L, Bayer, P, Janning, P, Thomashow, L.S, Mavrodi, D.V.
Deposit date:2004-07-16
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
Proc.Natl.Acad.Sci.USA, 101, 2004

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon