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PDB: 12920 results

6MT7
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Phlebotomus duboscqi salivary D7 protein, selenomethionine derivative
Descriptor: 26.7 kDa salivary protein, FRAGMENT OF TRITON X-100
Authors:Andersen, J.F, Jablonka, W.
Deposit date:2018-10-19
Release date:2019-04-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Functional and structural similarities of D7 proteins in the independently-evolved salivary secretions of sand flies and mosquitoes.
Sci Rep, 9, 2019
6MTF
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D7 protein from Phlebotomus duboscqi, native
Descriptor: 26.7 kDa salivary protein, FRAGMENT OF TRITON X-100
Authors:Andersen, J.F, Jablonka, W.
Deposit date:2018-10-19
Release date:2019-04-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Functional and structural similarities of D7 proteins in the independently-evolved salivary secretions of sand flies and mosquitoes.
Sci Rep, 9, 2019
8SEK
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BU of 8sek by Molmil
Type IIIa beta-amyloid 40 Filaments from Down syndrome
Descriptor: Type IIIb beta-amyloid 40 Filament
Authors:Hoq, M.R, Vago, F.S, Bharath, S.R, Jiang, W.
Deposit date:2023-04-10
Release date:2024-04-03
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of amyloid-beta and tau filaments in Down syndrome.
Nat.Struct.Mol.Biol., 31, 2024
8SEL
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Type IIIb beta-amyloid 40 Filaments from Down Syndrome
Descriptor: Amyloid-beta protein 40
Authors:Hoq, M.R, Vago, F.S, Bharath, S.R, Jiang, W.
Deposit date:2023-04-10
Release date:2024-04-03
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of amyloid-beta and tau filaments in Down syndrome.
Nat.Struct.Mol.Biol., 31, 2024
8EQ4
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Human PAC in nanodisc at pH 4.0 with PI(4,5)P2 diC8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Proton-activated chloride channel, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Ruan, Z, Lu, W.
Deposit date:2022-10-07
Release date:2023-02-01
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Inhibition of the proton-activated chloride channel PAC by PIP 2.
Elife, 12, 2023
8SEJ
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Type I beta-amyloid 42 Filaments from Down syndrome
Descriptor: Amyloid-beta protein 42
Authors:Hoq, M.R, Bharath, S.R, Vago, F.S, Jiang, W.
Deposit date:2023-04-10
Release date:2024-04-03
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cryo-EM structures of amyloid-beta and tau filaments in Down syndrome.
Nat.Struct.Mol.Biol., 31, 2024
2LZ3
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Solution NMR structure of transmembrane domain of amyloid precursor protein WT
Descriptor: Amyloid beta A4 protein
Authors:Chen, W, Wang, C.
Deposit date:2012-09-23
Release date:2013-10-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Familial Alzheimer's mutations within APPTM increase A beta 42 production by enhancing accessibility of epsilon-cleavage site.
Nat Commun, 5, 2014
8SFT
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BU of 8sft by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with kaempferol
Descriptor: 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, SULFATE ION, UDP-glycosyltransferase 202A2, ...
Authors:Arriaza, R.H, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
Deposit date:2023-04-11
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with kaempferol
To Be Published
6MH6
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High-viscosity injector-based Pink Beam Serial Crystallography of Micro-crystals at a Synchrotron Radiation Source.
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Martin-Garcia, J.M, Zhu, L, Mendez, D, Lee, M, Chun, E, Li, C, Hu, H, Subramanian, G, Kissick, D, Ogata, C, Henning, R, Ishchenko, A, Dobson, Z, Zhan, S, Weierstall, U, Spence, J.C.H, Fromme, P, Zatsepin, N.A, Fischetti, R.F, Cherezov, V, Liu, W.
Deposit date:2018-09-17
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source.
Iucrj, 6, 2019
5JMT
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Crystal structure of Zika virus NS3 helicase
Descriptor: NS3 helicase
Authors:Tian, H, Ji, X, Yang, X, Xie, W, Yang, K, Chen, C, Wu, C, Chi, H, Mu, Z, Wang, Z, Yang, H.
Deposit date:2016-04-29
Release date:2016-05-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:The crystal structure of Zika virus helicase: basis for antiviral drug design
Protein Cell, 7, 2016
5BWN
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BU of 5bwn by Molmil
Crystal Structure of SIRT3 with a H3K9 Peptide Containing a Myristoyl Lysine
Descriptor: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, ZINC ION, ...
Authors:Gai, W, Liu, D.
Deposit date:2015-06-08
Release date:2016-07-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.942 Å)
Cite:Crystal structures of SIRT3 reveal that the alpha 2-alpha 3 loop and alpha 3-helix affect the interaction with long-chain acyl lysine.
Febs Lett., 590, 2016
6MKA
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Crystal structure of penicillin binding protein 5 (PBP5) from Enterococcus faecium in the open conformation
Descriptor: SULFATE ION, penicillin binding protein 5 (PBP5)
Authors:Moon, T.M, Lee, C, D'Andrea, E.D, Peti, W, Page, R.
Deposit date:2018-09-25
Release date:2018-10-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:The structures of penicillin-binding protein 4 (PBP4) and PBP5 fromEnterococciprovide structural insights into beta-lactam resistance.
J. Biol. Chem., 293, 2018
8SFW
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Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE
Authors:Arriaza, R.H, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
Deposit date:2023-04-11
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with quercetin
To Be Published
1NDA
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BU of 1nda by Molmil
THE STRUCTURE OF TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE IN THE OXIDIZED AND NADPH REDUCED STATE
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, TRYPANOTHIONE OXIDOREDUCTASE
Authors:Lantwin, C.B, Kabsch, W, Pai, E.F, Schlichting, I, Krauth-Siegel, R.L.
Deposit date:1993-07-02
Release date:1994-09-30
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of Trypanosoma cruzi trypanothione reductase in the oxidized and NADPH reduced state.
Proteins, 18, 1994
8F7U
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BU of 8f7u by Molmil
Macrocyclic Plasmin Inhibitor
Descriptor: (5S,8R,18S,21R)-N-{[4-(aminomethyl)phenyl]methyl}-21-[(benzenesulfonyl)amino]-3,11,20-trioxo-2,5,8,12,19-pentaazatetracyclo[21.2.2.2~5,8~.2~13,16~]hentriaconta-1(25),13,15,23,26,28-hexaene-18-carboxamide, Activation peptide, GLYCEROL, ...
Authors:Guojie, W.
Deposit date:2022-11-20
Release date:2023-02-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Synthesis and structural characterization of new macrocyclicplasmin inhibitors
Chemmedchem, 2023
2WQ5
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BU of 2wq5 by Molmil
Non-antibiotic properties of tetracyclines: structural basis for inhibition of secretory phospholipase A2.
Descriptor: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, CALCIUM ION, PHOSPHOLIPASE A2, ...
Authors:Dalm, D, Palm, G.J, Hinrichs, W.
Deposit date:2009-08-13
Release date:2010-03-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Non-Antibiotic Properties of Tetracyclines: Structural Basis for Inhibition of Secretory Phospholipase A(2).
J.Mol.Biol., 398, 2010
5JGJ
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BU of 5jgj by Molmil
Crystal structure of GtmA
Descriptor: UbiE/COQ5 family methyltransferase, putative
Authors:Dolan, S.K, Bock, T, Hering, V, Jones, G.W, Blankenfeldt, W, Doyle, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural, mechanistic and functional insight into gliotoxinbis-thiomethylation inAspergillus fumigatus.
Open Biol, 7, 2017
8F7V
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Macrocyclic plasmin inhibitor
Descriptor: (6S,9R,19S,22R)-N-{[4-(aminomethyl)phenyl]methyl}-22-[(benzenesulfonyl)amino]-3,12,21-trioxo-2,6,9,13,20-pentaazatetracyclo[22.2.2.2~6,9~.2~14,17~]dotriaconta-1(26),14,16,24,27,29-hexaene-19-carboxamide, GLYCEROL, Plasminogen, ...
Authors:Guojie, W.
Deposit date:2022-11-20
Release date:2023-02-08
Last modified:2023-06-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Synthesis and structural characterization of new macrocyclicplasmin inhibitors
Chemmedchem, 2023
6MKG
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BU of 6mkg by Molmil
Crystal structure of penicillin binding protein 5 (PBP5) from Enterococcus faecium in the benzylpenicilin-bound form
Descriptor: OPEN FORM - PENICILLIN G, SULFATE ION, penicillin binding protein 5 (PBP5)
Authors:Moon, T.M, Lee, C, D'Andrea, E.D, Peti, W, Page, R.
Deposit date:2018-09-25
Release date:2018-10-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:The structures of penicillin-binding protein 4 (PBP4) and PBP5 fromEnterococciprovide structural insights into beta-lactam resistance.
J. Biol. Chem., 293, 2018
5CPF
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Compensation of the effect of isoleucine to alanine mutation by designed inhibition in the InhA enzyme
Descriptor: 2-(2-methylphenoxy)-5-[(4-phenyl-1H-1,2,3-triazol-1-yl)methyl]phenol, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Li, H.-J, Lai, C.-T, Pan, P, Yu, W, Shah, S, Bommineni, G.R, Perrone, V, Garcia-Diaz, M, Tonge, P.J, Simmerling, C.
Deposit date:2015-07-21
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.409 Å)
Cite:Rational Modulation of the Induced-Fit Conformational Change for Slow-Onset Inhibition in Mycobacterium tuberculosis InhA.
Biochemistry, 54, 2015
2MJ2
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BU of 2mj2 by Molmil
Structure of the dimerization domain of the human polyoma, JC virus agnoprotein is an amphipathic alpha-helix.
Descriptor: Agnoprotein
Authors:Coric, P, Saribas, S.A, Abou-Gharbia, M, Childers, W, White, M, Bouaziz, S, Safak, M.
Deposit date:2013-12-23
Release date:2014-04-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The structure of the dimerization domain of the human polyoma, JC virus agnoprotein is an amphipathic alpha-helix
J.Virol., 2014
6MJW
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BU of 6mjw by Molmil
human cGAS catalytic domain bound with the inhibitor G150
Descriptor: 1-[9-(6-aminopyridin-3-yl)-6,7-dichloro-1,3,4,5-tetrahydro-2H-pyrido[4,3-b]indol-2-yl]-2-hydroxyethan-1-one, Cyclic GMP-AMP synthase, ZINC ION
Authors:Lama, L, Adura, C, Xie, W, Tomita, D, Kamei, T, Kuryavyi, V, Gogakos, T, Steinberg, J.I, Miller, M, Ramos-Espiritu, L, Asano, Y, Hashizume, S, Aida, J, Imaeda, T, Okamoto, R, Jennings, A.J, Michinom, M, Kuroita, T, Stamford, A, Gao, P, Meinke, P, Glickman, J.F, Patel, D.J, Tuschl, T.
Deposit date:2018-09-23
Release date:2019-05-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.405 Å)
Cite:Development of human cGAS-specific small-molecule inhibitors for repression of dsDNA-triggered interferon expression.
Nat Commun, 10, 2019
1GSO
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BU of 1gso by Molmil
GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE (GAR-SYN) FROM E. COLI.
Descriptor: PROTEIN (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE)
Authors:Wang, W, Kappock, T.J, Stubbe, J, Ealick, S.E.
Deposit date:1998-09-08
Release date:1998-12-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli.
Biochemistry, 37, 1998
5J1V
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Crystal structure of human CLK1 in complex with pyrido[3,4-g]quinazoline derivative ZW29 (compound 13)
Descriptor: Dual specificity protein kinase CLK1, GLYCEROL, pyrido[3,4-g]quinazoline-2,10-diamine
Authors:Chaikuad, A, Esvan, Y.J, Zeinyeh, W, Boibessot, T, Nauton, L, Thery, V, Loaec, N, Meijer, L, Giraud, F, Moreau, P, Anizon, F, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2016-03-29
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Discovery of pyrido[3,4-g]quinazoline derivatives as CMGC family protein kinase inhibitors: Design, synthesis, inhibitory potency and X-ray co-crystal structure.
Eur.J.Med.Chem., 118, 2016
8SM0
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BU of 8sm0 by Molmil
Crystal structure of human complement receptor 2 (CD21) in complex with Epstein-Barr virus major glycoprotein gp350
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Complement receptor type 2, Envelope glycoprotein gp350, ...
Authors:Chen, W.-H, Bu, W, Cohen, J.I, Kanekiyo, M, Joyce, M.G.
Deposit date:2023-04-25
Release date:2024-05-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural Basis For Receptor Engagement And Virus Neutralization Through Epstein-Barr Virus Gp350
To Be Published

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