Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12521 results

8T83
DownloadVisualize
BU of 8t83 by Molmil
X-ray crystal structure of PfA-M1(M462K)
Descriptor: Aminopeptidase N, GLYCEROL, ZINC ION
Authors:Yang, W, Drinkwater, N, Webb, C.T, McGowan, S.
Deposit date:2023-06-21
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational dynamics of the Plasmodium falciparum M1 aminopeptidase.
To Be Published
3IZN
DownloadVisualize
BU of 3izn by Molmil
Mm-cpn deltalid with ATP
Descriptor: Chaperonin
Authors:Douglas, N.R, Reissmann, S, Zhang, J, Chen, B, Jakana, J, Kumar, R, Chiu, W, Frydman, J.
Deposit date:2010-10-30
Release date:2011-02-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Dual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber.
Cell(Cambridge,Mass.), 144, 2011
3IZL
DownloadVisualize
BU of 3izl by Molmil
Mm-cpn rls deltalid with ATP and AlFx
Descriptor: Mm-cpn rls deltalid
Authors:Douglas, N.R, Reissmann, S, Zhang, J, Chen, B, Jakana, J, Kumar, R, Chiu, W, Frydman, J.
Deposit date:2010-10-29
Release date:2011-02-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Dual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber.
Cell(Cambridge,Mass.), 144, 2011
3J0F
DownloadVisualize
BU of 3j0f by Molmil
Sindbis virion
Descriptor: Capsid protein, E1 envelope glycoprotein, E2 envelope glycoprotein
Authors:Tang, J, Jose, J, Zhang, W, Chipman, P, Kuhn, R.J, Baker, T.S.
Deposit date:2011-07-08
Release date:2011-10-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Molecular Links between the E2 Envelope Glycoprotein and Nucleocapsid Core in Sindbis Virus.
J.Mol.Biol., 414, 2011
8T6Q
DownloadVisualize
BU of 8t6q by Molmil
Cryo-EM structure of dodecameric CaMKII beta holoenzyme T287A T306A T307A
Descriptor: Venus-tagged CaMKII beta holoenzyme mutant
Authors:Chien, C.-T, Chiu, W, Khan, S.
Deposit date:2023-06-16
Release date:2024-06-19
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Hub stability in the calcium calmodulin-dependent protein kinase II.
Commun Biol, 7, 2024
4PZ1
DownloadVisualize
BU of 4pz1 by Molmil
Crystal structure of a sHIP (UniProt Id: Q99XU0) mutant from Streptococcus pyogenes
Descriptor: CALCIUM ION, CHLORIDE ION, sHIP
Authors:Wisniewska, M, Happonen, L, Frick, I.-M, Bjorck, L, Streicher, W, Malmstrom, J, Wikstrom, M.
Deposit date:2014-03-28
Release date:2015-03-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Functional and structural properties of a novel protein and virulence factor (Protein sHIP) in Streptococcus pyogenes.
J.Biol.Chem., 289, 2014
3IZP
DownloadVisualize
BU of 3izp by Molmil
Conformation of EF-G during translocation
Descriptor: Elongation factor G
Authors:Li, W, Trabuco, L.G, Schulten, K, Frank, J.
Deposit date:2010-11-15
Release date:2011-03-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY
Cite:Molecular dynamics of EF-G during translocation.
Proteins, 79, 2011
3IZK
DownloadVisualize
BU of 3izk by Molmil
Mm-cpn rls deltalid with ATP
Descriptor: Chaperonin
Authors:Douglas, N.R, Reissmann, S, Zhang, J, Chen, B, Jakana, J, Kumar, R, Chiu, W, Frydman, J.
Deposit date:2010-10-29
Release date:2011-02-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Dual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber.
Cell(Cambridge,Mass.), 144, 2011
4Q0N
DownloadVisualize
BU of 4q0n by Molmil
Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
Descriptor: (2E)-1-(2-hydroxyphenyl)-3-(2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)prop-2-en-1-one, 1,2-ETHANEDIOL, Protein polybromo-1
Authors:Filippakopoulos, P, Picaud, S, Felletar, I, Martin, S, Monteiro, O, Fedorov, O, Chaikuad, A, Yue, W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-04-02
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the fifth bromodomain of Human Poly-bromodomain containing protein 1 (PB1) in complex with a hydroxyphenyl-propenone ligand
To be Published
8T7P
DownloadVisualize
BU of 8t7p by Molmil
X-ray crystal structure of PfA-M1(M462S)
Descriptor: Aminopeptidase N, GLYCEROL, MAGNESIUM ION, ...
Authors:Yang, W, Drinkwater, N, Webb, C.T, McGowan, S.
Deposit date:2023-06-21
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational dynamics of the Plasmodium falciparum M1 aminopeptidase.
To Be Published
3J7N
DownloadVisualize
BU of 3j7n by Molmil
Virus model of brome mosaic virus (second half data set)
Descriptor: Capsid protein
Authors:Wang, Z, Hryc, C, Bammes, B, Afonine, P.V, Jakana, J, Chen, D.H, Liu, X, Baker, M.L, Kao, C, Ludtke, S.J, Schmid, M.F, Adams, P.D, Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J32
DownloadVisualize
BU of 3j32 by Molmil
An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Descriptor: Hemocyanin isoform 1
Authors:Zhang, Q, Dai, X, Cong, Y, Zhang, J, Chen, D.-H, Dougherty, M, Wang, J, Ludtke, S, Schmid, M.F, Chiu, W.
Deposit date:2013-02-20
Release date:2013-04-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structure of a molluscan hemocyanin suggests its allosteric mechanism.
Structure, 21, 2013
3J7L
DownloadVisualize
BU of 3j7l by Molmil
Full virus map of brome mosaic virus
Descriptor: Capsid protein
Authors:Wang, Z, Hryc, C, Bammes, B, Afonine, P.V, Jakana, J, Chen, D.H, Liu, X, Baker, M.L, Kao, C, Ludtke, S.J, Schmid, M.F, Adams, P.D, Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J8A
DownloadVisualize
BU of 3j8a by Molmil
Structure of the F-actin-tropomyosin complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:von der Ecken, J, Mueller, M, Lehman, W, Manstein, J.M, Penczek, A.P, Raunser, S.
Deposit date:2014-10-08
Release date:2014-12-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the F-actin--tropomyosin complex.
Nature, 519, 2015
3JT1
DownloadVisualize
BU of 3jt1 by Molmil
Legionella pneumophila glucosyltransferase Lgt1, UDP-bound form
Descriptor: Putative uncharacterized protein, URIDINE-5'-DIPHOSPHATE
Authors:Lu, W, Du, J, Belyi, Y, Stahl, M, Zivilikidis, T, Gerhardt, S, Aktories, K, Einsle, O.
Deposit date:2009-09-11
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Action of Glucosyltransferase Lgt1 from Legionella pneumophila.
J.Mol.Biol., 2009
7V3T
DownloadVisualize
BU of 7v3t by Molmil
Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands
Descriptor: 11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene, TBA G4 DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Liu, W, Zhu, B.C, Mao, Z.W.
Deposit date:2021-08-11
Release date:2022-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.
Chem Sci, 13, 2022
8TF7
DownloadVisualize
BU of 8tf7 by Molmil
Apo structure of protein crystal of Tri17
Descriptor: AMP-binding protein
Authors:Zhai, R, Zhang, W.
Deposit date:2023-07-09
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:De novo biosynthesis of azide by a promiscuous N-nitrosylase
To Be Published
3JYN
DownloadVisualize
BU of 3jyn by Molmil
Crystal structures of Pseudomonas syringae pv. Tomato DC3000 quinone oxidoreductase complexed with NADPH
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Quinone oxidoreductase
Authors:Pan, X, Zhang, H, Gao, Y, Li, M, Chang, W.
Deposit date:2009-09-22
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structures of Pseudomonas syringae pv. tomato DC3000 quinone oxidoreductase and its complex with NADPH
Biochem.Biophys.Res.Commun., 390, 2009
3JAB
DownloadVisualize
BU of 3jab by Molmil
Domain organization and conformational plasticity of the G protein effector, PDE6
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, GafA domain of cone phosphodiesterase 6C, GafB domain of phosphodiesterase 2A, ...
Authors:Zhang, Z, He, F, Constantine, R, Baker, M.L, Baehr, W, Schmid, M.F, Wensel, T.G, Agosto, M.A.
Deposit date:2015-05-26
Release date:2015-06-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6.
J.Biol.Chem., 290, 2015
4Q7O
DownloadVisualize
BU of 4q7o by Molmil
The crystal structure of an immunity protein NMB0503 from Neisseria meningitidis MC58
Descriptor: BROMIDE ION, FORMIC ACID, Immunity protein
Authors:Tan, K, Stols, L, Eschenfeldt, W, Babnigg, G, Low, D.A, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
Deposit date:2014-04-25
Release date:2014-05-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structure of a contact-dependent growth-inhibition (CDI) immunity protein from Neisseria meningitidis MC58.
Acta Crystallogr F Struct Biol Commun, 71, 2015
3K8W
DownloadVisualize
BU of 3k8w by Molmil
Crysatl structure of a bacterial cell-surface flagellin N20C45
Descriptor: Flagellin homolog
Authors:Maruyama, Y, Momma, M, Hashimoto, W, Murata, K.
Deposit date:2009-10-15
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of N- and C-terminal regions of flagellin
To be Published
4PXZ
DownloadVisualize
BU of 4pxz by Molmil
Crystal structure of P2Y12 receptor in complex with 2MeSADP
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate), CHOLESTEROL, ...
Authors:Zhang, J, Zhang, K, Gao, Z.G, Paoletta, S, Zhang, D, Han, G.W, Li, T, Ma, L, Zhang, W, Muller, C.E, Yang, H, Jiang, H, Cherezov, V, Katritch, V, Jacobson, K.A, Stevens, R.C, Wu, B, Zhao, Q, GPCR Network (GPCR)
Deposit date:2014-03-25
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Agonist-bound structure of the human P2Y12 receptor
Nature, 509, 2014
3J42
DownloadVisualize
BU of 3j42 by Molmil
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Descriptor: Envelope protein E, Ig heavy chain V region MOPC 21, Igh protein chimera, ...
Authors:Wang, Z, Pennington, J.G, Jiang, W, Rossmann, M.G.
Deposit date:2013-06-13
Release date:2013-07-17
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol., 87, 2013
8FG2
DownloadVisualize
BU of 8fg2 by Molmil
SARS-CoV-2 Nucleocapsid dimer structure determined from COVID-19 patients
Descriptor: Nucleoprotein
Authors:Casasanta, M, Jonaid, G.M, Kaylor, L, Luqiu, W, DiCecco, L, Solares, M, Berry, S, Kelly, D.F.
Deposit date:2022-12-12
Release date:2023-01-11
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structural Insights of the SARS-CoV-2 Nucleocapsid Protein: Implications for the Inner-workings of Rapid Antigen Tests.
Microsc Microanal, 29, 2023
8FFR
DownloadVisualize
BU of 8ffr by Molmil
Revised structure of the rabies virus nucleoprotein-RNA complex
Descriptor: Nucleoprotein, PHOSPHATE ION, RNA (99-MER)
Authors:Leyrat, C, Bourhis, J.M, Albertini, A.A.V, Wernimont, A.K, Muziol, T, Ravelli, R.B.G, Weissenhorn, W, Ruigrok, R.W.H, Jamin, M.
Deposit date:2022-12-09
Release date:2023-01-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Structure and Dynamics of the Unassembled Nucleoprotein of Rabies Virus in Complex with Its Phosphoprotein Chaperone Module.
Viruses, 14, 2022

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon