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PDB: 73 results

8EOP
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Cryo-EM Structure of Nanodisc reconstituted human ABCA7 EQ mutant in ATP bound closed state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-10-04
Release date:2022-12-21
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
8EE6
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Cryo-EM Structure of human ABCA7 in PE/Ch nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Phospholipid-transporting ATPase ABCA7, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-09-06
Release date:2022-12-21
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
8EDW
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BU of 8edw by Molmil
Cryo-EM Structure of human ABCA7 in BPL/Ch Nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-09-06
Release date:2022-12-21
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
3L1X
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BU of 3l1x by Molmil
Crystal Structure of U-box Domain of Human E4B Ubiquitin Ligase
Descriptor: Ubiquitin conjugation factor E4 B
Authors:Benirschke, R, Thompson, J.R, Mer, G.
Deposit date:2009-12-14
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
3L1Y
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Crystal structure of human UBC4 E2 conjugating enzyme
Descriptor: Ubiquitin-conjugating enzyme E2 D2
Authors:Benirschke, R, Thompson, J.R, Mer, G.
Deposit date:2009-12-14
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
3SQF
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BU of 3sqf by Molmil
Crystal structure of monomeric M-PMV retroviral protease
Descriptor: Protease
Authors:Jaskolski, M, Kazmierczyk, M, Gilski, M, Krzywda, S, Pichova, I, Zabranska, H, Khatib, F, DiMaio, F, Cooper, S, Thompson, J, Popovic, Z, Baker, D, Group, Foldit Contenders
Deposit date:2011-07-05
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6324 Å)
Cite:Crystal structure of a monomeric retroviral protease solved by protein folding game players.
Nat.Struct.Mol.Biol., 18, 2011
6CO2
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BU of 6co2 by Molmil
Structure of an engineered protein (NUDT16TI) in complex with 53BP1 Tudor domains
Descriptor: NUDT16-Tudor-interacting (NUDT16TI), TP53-binding protein 1
Authors:Botuyan, M.V, Thompson, J.R, Cui, G, Mer, G.
Deposit date:2018-03-10
Release date:2018-06-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Mechanism of 53BP1 activity regulation by RNA-binding TIRR and a designer protein.
Nat. Struct. Mol. Biol., 25, 2018
3L1Z
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BU of 3l1z by Molmil
Crystal structure of the U-BOX domain of human E4B ubiquitin ligase in complex with UBCH5C E2 ubiquitin conjugating enzyme
Descriptor: Ubiquitin conjugation factor E4 B, Ubiquitin-conjugating enzyme E2 D3
Authors:Benirschke, R, Thompson, J.R, Mer, G.
Deposit date:2009-12-14
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
1EZF
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BU of 1ezf by Molmil
CRYSTAL STRUCTURE OF HUMAN SQUALENE SYNTHASE
Descriptor: FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE, N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1,4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID
Authors:Pandit, J, Danley, D.E, Schulte, G.K, Mazzalupo, S.M, Pauly, T.A, Hayward, C.M, Hamanaka, E.S, Thompson, J.F, Harwood, H.J.
Deposit date:2000-05-10
Release date:2000-10-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of human squalene synthase. A key enzyme in cholesterol biosynthesis.
J.Biol.Chem., 275, 2000
3KTF
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BU of 3ktf by Molmil
Structure of the N-terminal BRCT domain of human microcephalin (MCPH1).
Descriptor: CHLORIDE ION, Microcephalin
Authors:Singh, N, Heroux, A, Thompson, J.R, Mer, G.
Deposit date:2009-11-25
Release date:2009-12-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of N-terminal BRCT domain of human microcephalin (MCPH1)
To be Published
4W8Q
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BU of 4w8q by Molmil
Crystal structure of truncated hemolysin A from P. mirabilis at 1.4 Angstroms resolution
Descriptor: Hemolysin
Authors:Novak, W.R.P, Glasgow, E, Thompson, J.R, Weaver, T.M.
Deposit date:2014-08-26
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.428 Å)
Cite:Proteolysis of truncated hemolysin A yields a stable dimerization interface.
Acta Crystallogr F Struct Biol Commun, 73, 2017
3SZM
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BU of 3szm by Molmil
STRUCTURE OF HUMAN MICROCEPHALIN (MCPH1) TANDEM BRCT DOMAINS IN COMPLEX WITH A GAMMA-H2AX PHOSPHOPEPTIDE
Descriptor: Histone H2A.x, Microcephalin
Authors:Singh, N, Thompson, J.R, Mer, G.
Deposit date:2011-07-19
Release date:2011-11-30
Last modified:2012-09-19
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1.
Proc.Natl.Acad.Sci.USA, 109, 2012
3T1N
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BU of 3t1n by Molmil
Structure of human MICROCEPHALIN (MCPH1) TANDEM BRCT domains in complex with a CDC27 phosphopeptide
Descriptor: Cdc27 peptide, Microcephalin
Authors:Singh, N, Thompson, J.R, Mer, G.
Deposit date:2011-07-22
Release date:2011-11-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular Basis for the Association of Microcephalin (MCPH1) Protein with the Cell Division Cycle Protein 27 (Cdc27) Subunit of the Anaphase-promoting Complex.
J.Biol.Chem., 287, 2012
8U4U
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BU of 8u4u by Molmil
Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges
Descriptor: TP53-binding protein 1
Authors:Cui, G, Botuyan, M.V, Thompson, J.R, Mer, G.
Deposit date:2023-09-11
Release date:2023-09-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.79 Å)
Cite:An autoinhibited state of 53BP1 revealed by small molecule antagonists and protein engineering.
Nat Commun, 14, 2023
3U79
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BU of 3u79 by Molmil
AL-103 Y32F Y96F
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, Amyloidogenic immunoglobulin light chain protein AL-103 Y32F Y96F, ...
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
3U3Z
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BU of 3u3z by Molmil
Structure of human microcephalin (MCPH1) tandem BRCT domains in complex with an H2A.X peptide phosphorylated at Ser139 and Tyr142
Descriptor: GLYCEROL, Histone H2A.X peptide, Microcephalin
Authors:Singh, N, Thompson, J.R, Heroux, A, Mer, G.
Deposit date:2011-10-06
Release date:2012-07-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1.
Proc.Natl.Acad.Sci.USA, 109, 2012
1DC9
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BU of 1dc9 by Molmil
PROPERTIES AND CRYSTAL STRUCTURE OF A BETA-BARREL FOLDING MUTANT, V60N INTESTINAL FATTY ACID BINDING PROTEIN (IFABP)
Descriptor: INTESTINAL FATTY ACID BINDING PROTEIN
Authors:Ropson, I.J, Yowler, B.C, Dalessio, P.M, Banaszak, L, Thompson, J.
Deposit date:1999-11-04
Release date:2000-03-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Properties and crystal structure of a beta-barrel folding mutant.
Biophys.J., 78, 2000
1IB6
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BU of 1ib6 by Molmil
CRYSTAL STRUCTURE OF R153C E. COLI MALATE DEHYDROGENASE
Descriptor: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Bell, J.K, Yennawar, H.P, Wright, S.K, Thompson, J.R, Viola, R.E, Banaszak, L.J.
Deposit date:2001-03-27
Release date:2001-09-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Analyses of a Malate Dehydrogenase with a Variable Active Site
J.Biol.Chem., 276, 2001
1IE3
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BU of 1ie3 by Molmil
CRYSTAL STRUCTURE OF R153C E. COLI MALATE DEHYDROGENASE
Descriptor: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PYRUVIC ACID
Authors:Bell, J.K, Yennawar, H.P, Wright, S.K, Thompson, J.R, Viola, R.E, Banaszak, L.J.
Deposit date:2001-04-05
Release date:2001-09-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Analyses of a Malate Dehydrogenase with a Variable Active Site
J.Biol.Chem., 276, 2001
3TVV
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BU of 3tvv by Molmil
Structure of the tandem PH domains of Rtt106 (residues 68-315)
Descriptor: Histone chaperone RTT106
Authors:Su, D, Thompson, J.R, Mer, G.
Deposit date:2011-09-20
Release date:2012-02-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.589 Å)
Cite:Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.
Nature, 483, 2012
3U7A
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BU of 3u7a by Molmil
AL-09 Y32F Y96F
Descriptor: Amyloidogenic immunoglobulin light chain protein AL-09 Y32F Y96F, variable domain
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
3TW1
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BU of 3tw1 by Molmil
Structure of Rtt106-AHN
Descriptor: GLYCEROL, Histone chaperone RTT106, N-[2-(1H-IMIDAZOL-4-YL)ETHYL]ACETAMIDE
Authors:Su, D, Thompson, J.R, Mer, G.
Deposit date:2011-09-21
Release date:2012-02-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.772 Å)
Cite:Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.
Nature, 483, 2012
5TIH
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BU of 5tih by Molmil
Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
Descriptor: ACETATE ION, CyRPA antibody Fab Heavy Chain, CyRPA antibody Fab Light Chain, ...
Authors:Chen, L, Xu, Y, Wang, W, Thompson, J.K, Goddard-Borger, E, Lawrence, M.C, Cowman, A.F.
Deposit date:2016-10-03
Release date:2017-03-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural basis for inhibition of erythrocyte invasion by antibodies toPlasmodium falciparumprotein CyRPA.
Elife, 6, 2017
5TIK
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BU of 5tik by Molmil
Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
Descriptor: Cysteine-rich protective antigen
Authors:Chen, L, Xu, Y, Wang, W, Thompson, J.K, Goddard-Borger, E, Lawrence, M.C, Cowman, A.F.
Deposit date:2016-10-03
Release date:2017-03-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural basis for inhibition of erythrocyte invasion by antibodies toPlasmodium falciparumprotein CyRPA.
Elife, 6, 2017
5TRE
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BU of 5tre by Molmil
Zinc and the Iron Donor Frataxin Regulate Oligomerization of the Scaffold Protein to Form New Fe-S Cluster Assembly Centers
Descriptor: Frataxin homolog, mitochondrial, Iron sulfur cluster assembly protein 1
Authors:Ranatunga, W, Gakh, O, Galeano, B.K, Smith IV, D.Y, Thompson, J.R, Isaya, G.
Deposit date:2016-10-26
Release date:2017-06-07
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (15.6 Å)
Cite:Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe-S cluster assembly centers.
Metallomics, 9, 2017

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