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PDB: 236 results

4YQV
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BU of 4yqv by Molmil
Glutathione S-transferase Omega 1 bound to covalent inhibitor C4-10
Descriptor: 2-(ethylsulfanyl)-N-methyl-N-[(1-phenyl-1H-pyrazol-4-yl)methyl]acetamide, Glutathione S-transferase omega-1
Authors:Stuckey, J.A.
Deposit date:2015-03-13
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor.
Nat Commun, 7, 2016
4YQU
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BU of 4yqu by Molmil
Glutathione S-transferase Omega 1 bound to covalent inhibitor C1-31
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Glutathione S-transferase omega-1, N-{5-(azepan-1-ylsulfonyl)-2-[(ethylsulfanyl)methoxy]phenyl}acetamide
Authors:Stuckey, J.A.
Deposit date:2015-03-13
Release date:2016-10-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor.
Nat Commun, 7, 2016
9BIG
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BU of 9big by Molmil
Stat6 bound to degrader AK-1690
Descriptor: Signal transducer and activator of transcription 6, [(2-{[(2S)-1-{(2S,4S)-4-[(7-{2-[(3R)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}hept-6-yn-1-yl)oxy]-2-[(2R)-2-phenylmorpholine-4-carbonyl]pyrrolidin-1-yl}-3,3-dimethyl-1-oxobutan-2-yl]carbamoyl}-1-benzothiophen-5-yl)di(fluoro)methyl]phosphonic acid
Authors:Mallik, L, Stuckey, J.A.
Deposit date:2024-04-23
Release date:2024-10-02
Method:X-RAY DIFFRACTION (3.304 Å)
Cite:Discovery of AK-1690: A Potent and Highly Selective STAT6 PROTAC Degrader.
J.Med.Chem., 2024
8GBL
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BU of 8gbl by Molmil
Structure of Apo Human SIRT5
Descriptor: NAD-dependent protein deacylase sirtuin-5, mitochondrial, ZINC ION
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2023-02-26
Release date:2024-06-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Human SIRT5 variants with reduced stability and activity do not cause neuropathology in mice.
Iscience, 27, 2024
8GBN
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BU of 8gbn by Molmil
Structure of Apo Human SIRT5 P114T Mutant
Descriptor: 1,2-ETHANEDIOL, NAD-dependent protein deacylase sirtuin-5, mitochondrial, ...
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2023-02-26
Release date:2024-06-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Human SIRT5 variants with reduced stability and activity do not cause neuropathology in mice.
Iscience, 27, 2024
8SX4
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BU of 8sx4 by Molmil
Crystal Structure of eIF4e in complex with Compound 7n
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic translation initiation factor 4E, [(~{Z})-4-[2-azanyl-7-[(5-chloranyl-1~{H}-indol-2-yl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]but-2-enyl]phosphonic acid
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2023-05-19
Release date:2023-06-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.986 Å)
Cite:Design of Cell-Permeable Inhibitors of Eukaryotic Translation Initiation Factor 4E (eIF4E) for Inhibiting Aberrant Cap-Dependent Translation in Cancer.
J.Med.Chem., 66, 2023
6EGP
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BU of 6egp by Molmil
Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide
Descriptor: LEAD (II) ION, Pb(II)(GRAND CoilSerL12AL16C)3-, ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide
To Be Published
6EGN
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BU of 6egn by Molmil
Crystal Structure of a Three-stranded Coiled Coil Peptide Containing a Trigonal Planar Hg(II)S3 Site Modified by D-Leu in the Second Coordination Sphere
Descriptor: CHLORIDE ION, Hg(II)(GRAND CoilSerL16CL19(DLE))3-, MERCURY (II) ION, ...
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2019-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
6EGO
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BU of 6ego by Molmil
Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing an Ala Residue in the Second Coordination Sphere of the Hg(II)S3 Binding Site
Descriptor: Hg(II)(GRAND CoilSerL12AL16C)3-, MERCURY (II) ION, ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2019-04-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
6EGM
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BU of 6egm by Molmil
Crystal Structure of a de novo Three-stranded Coiled Coil Peptide Containing D-Leu in a d-site Position of a Tris-thiolate Binding Site
Descriptor: Apo-(GRAND CoilSerL16CL19(DLE))3, ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2019-04-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
6EGL
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BU of 6egl by Molmil
Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing a D-Leu in the Second Coordination Sphere of a Non-metalated Tris-thiolate Binding Site
Descriptor: Apo-(GRAND CoilSerL12(DLE)L16C)3, POLYETHYLENE GLYCOL (N=34), ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2019-04-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
4TW3
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BU of 4tw3 by Molmil
Insights into Substrate and Metal Binding from the Crystal Structure of Cyanobacterial Aldehyde Deformylating Oxygenase with Substrate Bound
Descriptor: 1,2-ETHANEDIOL, Aldehyde decarbonylase, FE (III) ION, ...
Authors:Buer, B.C, Paul, B, Das, D, Stuckey, J.A, Marsh, E.N.G.
Deposit date:2014-06-29
Release date:2014-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound.
Acs Chem.Biol., 9, 2014
6U6F
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BU of 6u6f by Molmil
The crystal structure of anti-apoptotic Mcl-1 protein in complex with 2, 5-substituted benzoic acid inhibitor 21
Descriptor: 2-[({4-[(4-tert-butylphenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Yang, Y, Stuckey, J.A, Nikolovska-Coleska, Z.
Deposit date:2019-08-29
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins.
J.Med.Chem., 63, 2020
6U9K
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BU of 6u9k by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 18 (TC-5153)
Descriptor: 5'-([(3S)-3-amino-3-carboxypropyl]{[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl}amino)-5'-deoxyadenosine, GLYCEROL, Histone-lysine N-methyltransferase, ...
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
6U9N
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BU of 6u9n by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 14 (TC-5139)
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(4-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase, ZINC ION
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
6U9R
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BU of 6u9r by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 12 (TC-5140)
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(3-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase, ZINC ION
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
3PBJ
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BU of 3pbj by Molmil
Hydrolytic catalysis and structural stabilization in a designed metalloprotein
Descriptor: CHLORIDE ION, COIL SER L9L-Pen L23H, MERCURY (II) ION, ...
Authors:Zastrow, M.L, Peacock, A.F.A, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2010-10-20
Release date:2011-11-30
Last modified:2022-05-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hydrolytic catalysis and structural stabilization in a designed metalloprotein.
Nat Chem, 4, 2012
7TVA
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BU of 7tva by Molmil
Stat5a Core in complex with AK2292
Descriptor: DI(HYDROXYETHYL)ETHER, MALONATE ION, N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N-(5-{2-[(3R)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}pent-4-yn-1-yl)-N-methyl-N~3~-[4-(1,3-thiazol-2-yl)phenyl]-beta-alaninamide, ...
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2022-02-04
Release date:2023-02-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.835 Å)
Cite:A selective small-molecule STAT5 PROTAC degrader capable of achieving tumor regression in vivo.
Nat.Chem.Biol., 19, 2023
7TVB
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BU of 7tvb by Molmil
Stat5A Core in Complex with AK305
Descriptor: GLYCEROL, N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N,N-dimethyl-N~3~-[4-(1,3-thiazol-2-yl)phenyl]-beta-alaninamide, Signal transducer and activator of transcription 5A
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2022-02-04
Release date:2023-02-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.653 Å)
Cite:A selective small-molecule STAT5 PROTAC degrader capable of achieving tumor regression in vivo.
Nat.Chem.Biol., 19, 2023
7UC6
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BU of 7uc6 by Molmil
Stat5a Core in complex with Compound 12
Descriptor: N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(4-bromophenyl)-N,N-dimethyl-beta-alaninamide, Signal transducer and activator of transcription 5A
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2022-03-16
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Discovery of a Potent and Selective STAT5 PROTAC Degrader with Strong Antitumor Activity In Vivo in Acute Myeloid Leukemia.
J.Med.Chem., 66, 2023
7UBT
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BU of 7ubt by Molmil
Stat5a Core in complex with Compound 18
Descriptor: GLYCEROL, N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(1,3-benzothiazol-5-yl)-N,N-dimethyl-beta-alaninamide, Signal transducer and activator of transcription 5A
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2022-03-15
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.352 Å)
Cite:Discovery of a Potent and Selective STAT5 PROTAC Degrader with Strong Antitumor Activity In Vivo in Acute Myeloid Leukemia.
J.Med.Chem., 66, 2023
7UC7
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BU of 7uc7 by Molmil
Stat5a Core in complex with Compound 17
Descriptor: GLYCEROL, N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(1-benzofuran-5-yl)-N,N-dimethyl-beta-alaninamide, Signal transducer and activator of transcription 5A
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2022-03-16
Release date:2023-02-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Discovery of a Potent and Selective STAT5 PROTAC Degrader with Strong Antitumor Activity In Vivo in Acute Myeloid Leukemia.
J.Med.Chem., 66, 2023
2BN0
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BU of 2bn0 by Molmil
Banana Lectin bound to Laminaribiose
Descriptor: CADMIUM ION, RIPENING-ASSOCIATED PROTEIN, SULFATE ION, ...
Authors:Meagher, J.L, Winter, H.C, Ezell, P, Goldstein, I.J, Stuckey, J.A.
Deposit date:2005-03-17
Release date:2005-06-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Banana Lectin Reveals a Novel Second Sugar Binding Site.
Glycobiology, 15, 2005
2BMZ
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BU of 2bmz by Molmil
Banana Lectin bound to Xyl-b1,3 Man-a-O-Methyl (XM)
Descriptor: CADMIUM ION, RIPENING-ASSOCIATED PROTEIN, SULFATE ION, ...
Authors:Meagher, J.L, Winter, H.C, Ezell, P, Goldstein, I.J, Stuckey, J.A.
Deposit date:2005-03-17
Release date:2005-06-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Banana Lectin Reveals a Novel Second Sugar Binding Site.
Glycobiology, 15, 2005
2BMY
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BU of 2bmy by Molmil
Banana Lectin
Descriptor: CADMIUM ION, RIPENING-ASSOCIATED PROTEIN, SULFATE ION
Authors:Meagher, J.L, Winter, H.C, Ezell, P, Goldstein, I.J, Stuckey, J.A.
Deposit date:2005-03-17
Release date:2005-06-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Banana Lectin Reveals a Novel Second Sugar Binding Site.
Glycobiology, 15, 2005

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