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PDB: 86 件
8DH6
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BU of 8dh6 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
分子名称: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase subunit 1, ...
著者Godoy, A.S, Song, Y, Cheruvara, H, Quigley, A, Oliva, G.
登録日2022-06-25
公開日2022-07-20
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
To Be Published
8DH7
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BU of 8dh7 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae Succinyl-CoA:acetate CoA-transferase (Ach1p)
分子名称: Acetyl-CoA hydrolase
著者Godoy, A.S, Song, Y, Cheruvara, H, Quigley, A, Oliva, G.
登録日2022-06-25
公開日2022-07-20
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
To Be Published
8EY2
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BU of 8ey2 by Molmil
Cryo-EM structure of SARS-CoV-2 Main protease C145S in complex with N-terminal peptide
分子名称: 3C-like proteinase
著者Noske, G.D, Song, Y, Fernandes, R.S, Oliva, G, Godoy, A.S.
登録日2022-10-26
公開日2022-12-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition.
Nat Commun, 14, 2023
6KNM
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BU of 6knm by Molmil
Apelin receptor in complex with single domain antibody
分子名称: Apelin receptor,Rubredoxin,Apelin receptor, Single domain antibody JN241, ZINC ION
著者Ma, Y.B, Ding, Y, Song, X, Ma, X, Li, X, Zhang, N, Song, Y, Sun, Y, Shen, Y, Zhong, W, Hu, L.A, Ma, Y.L, Zhang, M.Y.
登録日2019-08-06
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure-guided discovery of a single-domain antibody agonist against human apelin receptor.
Sci Adv, 6, 2020
3SR4
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BU of 3sr4 by Molmil
Crystal Structure of Human DOT1L in Complex with a Selective Inhibitor
分子名称: (2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid, ACETATE ION, GLYCEROL, ...
著者Diao, J, Chen, P, Yao, Y, Prasad, B.V.V, Song, Y.
登録日2011-07-06
公開日2011-10-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Selective Inhibitors of Histone Methyltransferase DOT1L: Design, Synthesis, and Crystallographic Studies.
J.Am.Chem.Soc., 133, 2011
3RAS
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BU of 3ras by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with a lipophilic phosphonate inhibitor
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-(N-HYDROXYACETAMIDO)-1-(3,4-DICHLOROPHENYL)PROPYLPHOSPHONIC ACID, MANGANESE (II) ION, ...
著者Diao, J, Deng, L, Prasad, B.V.V, Song, Y.
登録日2011-03-28
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Inhibition of 1-deoxy-D-xylulose-5-phosphate reductoisomerase by lipophilic phosphonates: SAR, QSAR, and crystallographic studies.
J.Med.Chem., 54, 2011
4YLY
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BU of 4yly by Molmil
Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, staphylococcus aureus at 2.25 angstrom resolution
分子名称: GLYCEROL, Peptidyl-tRNA hydrolase
著者Zhang, F, Song, Y, Li, X, Teng, M.K.
登録日2015-03-06
公開日2016-01-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of Staphylococcus aureus peptidyl-tRNA hydrolase at a 2.25 angstrom resolution.
Acta Biochim.Biophys.Sin., 47, 2015
4IMZ
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BU of 4imz by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
分子名称: Genome polyprotein, SODIUM ION, THIOCYANATE ION, ...
著者Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
登録日2013-01-03
公開日2013-02-20
最終更新日2013-04-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4IN1
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BU of 4in1 by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
分子名称: 3C-like protease, SULFATE ION
著者Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
登録日2013-01-03
公開日2013-02-20
最終更新日2020-01-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4IMQ
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BU of 4imq by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
分子名称: 3C-like protease, PEPTIDE INHIBITOR, syc8, ...
著者Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
登録日2013-01-03
公開日2013-02-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4IN2
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BU of 4in2 by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
分子名称: C-like protease
著者Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
登録日2013-01-03
公開日2013-02-20
最終更新日2013-04-10
実験手法X-RAY DIFFRACTION (2.401 Å)
主引用文献Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4INH
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BU of 4inh by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
分子名称: DIMETHYL SULFOXIDE, Genome polyprotein, peptide inhibitor, ...
著者Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
登録日2013-01-04
公開日2013-02-20
最終更新日2013-04-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
2LP1
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BU of 2lp1 by Molmil
The solution NMR structure of the transmembrane C-terminal domain of the amyloid precursor protein (C99)
分子名称: C99
著者Barrett, P.J, Song, Y, Van Horn, W.D, Hustedt, E.J, Schafer, J.M, Hadziselimovic, A, Beel, A.J, Sanders, C.R.
登録日2012-01-30
公開日2012-06-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.
Science, 336, 2012
3ANN
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BU of 3ann by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with quinolin-2-ylmethylphosphonic acid
分子名称: (quinolin-2-ylmethyl)phosphonic acid, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Endo, K, Kato, M, Deng, L, Song, Y, Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
3ANM
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BU of 3anm by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with 5-phenylpyridin-2-ylmethylphosphonic acid
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, [(5-phenylpyridin-2-yl)methyl]phosphonic acid
著者Endo, K, Kato, M, Deng, L, Song, Y, Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
3ANL
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BU of 3anl by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with pyridin-2-ylmethylphosphonic acid
分子名称: (pyridin-2-ylmethyl)phosphonic acid, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Endo, K, Kato, M, Deng, L, Song, Y, Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
6ITX
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BU of 6itx by Molmil
Structure of the C-terminal head domain of the avian adenovirus EDSV fiber
分子名称: Fiber protein, GLUTAMINE, SULFATE ION
著者Wei, Q, Song, Y.
登録日2018-11-26
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Unravelling the receptor binding property of egg drop syndrome virus (EDSV) from the crystal structure of EDSV fiber head.
Int.J.Biol.Macromol., 139, 2019
2MV0
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BU of 2mv0 by Molmil
Solution NMR Structure of Maltose-binding protein from Escherichia coli, Northeast Structural Genomics Consortium (NESG) Target ER690
分子名称: Maltose-binding periplasmic protein
著者Rossi, P, Lange, O.F, Sgourakis, N.G, Song, Y, Lee, H, Aramini, J.M, Ertekin, A, Xiao, R, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2014-09-18
公開日2014-12-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
Proc.Natl.Acad.Sci.USA, 109, 2012
2NDJ
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BU of 2ndj by Molmil
Structural Basis for KCNE3 and Estrogen Modulation of the KCNQ1 Channel
分子名称: Potassium voltage-gated channel subfamily E member 3
著者Sanders, C.R, Van Horn, W.D, Kroncke, B.M, Sisco, N.J, Meiler, J, Vanoye, C.G, Song, Y, Nannemann, D.P, Welch, R.C, Kang, C, Smith, J, George, A.L.
登録日2016-06-09
公開日2016-09-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for KCNE3 modulation of potassium recycling in epithelia.
Sci Adv, 2, 2016
5CB3
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BU of 5cb3 by Molmil
Structural Insights into the Mechanism of Escherichia coli Ymdb
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, O-acetyl-ADP-ribose deacetylase
著者Zhang, W, Wang, C, Song, Y, Shao, C, Zhang, X, Zang, J.
登録日2015-06-30
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase
J.Struct.Biol., 192, 2015
5CN2
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BU of 5cn2 by Molmil
Crystal structure of yeast GGA1_GAE domain-C2221
分子名称: ADP-ribosylation factor-binding protein GGA1
著者Zhang, F, Song, Y, Li, X, Teng, M.K.
登録日2015-07-17
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural basis for the accessory protein recruitment by yeast GGA1_GAE domain
To Be Published
5CMW
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BU of 5cmw by Molmil
Crystal structure of yeast Ent5 N-terminal domain-soaked in KI
分子名称: Epsin-5, GLYCEROL, IODIDE ION
著者Zhang, F, Song, Y, Li, X, Teng, M.K.
登録日2015-07-17
公開日2016-07-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and functional insight into the N-terminal domain of the clathrin adaptor Ent5 from Saccharomyces cerevisiae
Biochem.Biophys.Res.Commun., 477, 2016
5CB5
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BU of 5cb5 by Molmil
Structural Insights into the Mechanism of Escherichia coli Ymdb
分子名称: ACETATE ION, ADENOSINE-5-DIPHOSPHORIBOSE, O-acetyl-ADP-ribose deacetylase, ...
著者Zhang, W, Wang, C, Song, Y, Shao, C, Zhang, X, Zang, J.
登録日2015-06-30
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase
J.Struct.Biol., 192, 2015
5CN1
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BU of 5cn1 by Molmil
Crystal structure of yeast GGA1_GAE domain-P21
分子名称: ADP-ribosylation factor-binding protein GGA1
著者Zhang, F, Song, Y, Li, X, Teng, M.K.
登録日2015-07-17
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structural basis for the accessory protein recruitment by yeast GGA1_GAE domain
To Be Published
5CMS
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BU of 5cms by Molmil
Structural Insights into the Mechanism of Escherichia coli Ymdb
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, O-acetyl-ADP-ribose deacetylase, SULFATE ION
著者Zhang, W, Wang, C, Song, Y, Shao, C, Zhang, X, Zang, J.
登録日2015-07-17
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase
J.Struct.Biol., 192, 2015

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件を2024-06-12に公開中

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