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PDB: 356 results

7YTW
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BU of 7ytw by Molmil
Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter
Descriptor: ASCORBIC ACID, SODIUM ION, Solute carrier family 23 member 1
Authors:She, J, Wang, M, He, J, Zhang, K, Li, S.
Deposit date:2022-08-16
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter.
Nat Commun, 14, 2023
7YTY
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BU of 7yty by Molmil
Mouse SVCT1 in an apo state
Descriptor: Solute carrier family 23 member 1
Authors:She, J, Wang, M, He, J, Zhang, K, Li, S.
Deposit date:2022-08-16
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter.
Nat Commun, 14, 2023
6C9A
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BU of 6c9a by Molmil
Cryo-EM structure of mouse TPC1 channel in the PtdIns(3,5)P2-bound state
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:She, J, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2018-01-25
Release date:2018-04-04
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel.
Nature, 556, 2018
6C96
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BU of 6c96 by Molmil
Cryo-EM structure of mouse TPC1 channel in the apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:She, J, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2018-01-25
Release date:2018-04-04
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel.
Nature, 556, 2018
8IOW
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BU of 8iow by Molmil
Cryo-EM structure of the sarilumab Fab/IL-6R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Sarilumab Fab, Interleukin-6 receptor subunit alpha, ...
Authors:She, J, Chen, L, Wang, M.X.
Deposit date:2023-03-13
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of the sarilumab Fab/IL-6R complex
To Be Published
8J6F
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BU of 8j6f by Molmil
Cryo-EM structure of the Tocilizumab Fab/IL-6R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Tocilizumab Fab, IL6R-D2 peptide, ...
Authors:She, J, Chen, L.
Deposit date:2023-04-25
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of tocilizumab and sarilumab Fabs in complex with IL-6R
To Be Published
6NQ2
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BU of 6nq2 by Molmil
Cryo-EM structure of human TPC2 channel in the ligand-bound closed state
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Two pore calcium channel protein 2
Authors:She, J, Zeng, W, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2019-01-18
Release date:2019-03-27
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural mechanisms of phospholipid activation of the human TPC2 channel.
Elife, 8, 2019
6NQ1
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BU of 6nq1 by Molmil
Cryo-EM structure of human TPC2 channel in the apo state
Descriptor: Two pore calcium channel protein 2
Authors:She, J, Zeng, W, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2019-01-18
Release date:2019-03-27
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural mechanisms of phospholipid activation of the human TPC2 channel.
Elife, 8, 2019
6NQ0
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BU of 6nq0 by Molmil
Cryo-EM structure of human TPC2 channel in the ligand-bound open state
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Two pore calcium channel protein 2
Authors:She, J, Zeng, W, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2019-01-18
Release date:2019-03-27
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural mechanisms of phospholipid activation of the human TPC2 channel.
Elife, 8, 2019
4U34
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BU of 4u34 by Molmil
Crystal Structures of RNA Duplexes Containing 2-thio-Uridine
Descriptor: RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*(SUR)P*CP*C-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
3LTR
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BU of 3ltr by Molmil
5-OMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
4U38
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BU of 4u38 by Molmil
RNA duplex containing UU mispair
Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
4U35
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BU of 4u35 by Molmil
Crystal Structures of RNA Duplexes Containing 2-thio-Uridine
Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*(SUR)P*CP*C-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
4U37
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BU of 4u37 by Molmil
Native 7mer-RNA duplex
Descriptor: RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
3LTU
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BU of 3ltu by Molmil
5-SeMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
8G3G
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BU of 8g3g by Molmil
CryoEM structure of yeast recombination mediator Rad52
Descriptor: DNA repair and recombination protein RAD52
Authors:Deveryshetty, J, Basore, K, Rau, M, Fitzpatrick, J.A.J, Antony, E.
Deposit date:2023-02-07
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes.
Nat Commun, 14, 2023
8HZ5
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BU of 8hz5 by Molmil
The homodimer of a biotin carboxylase isoform from chloroflexus aurantiacus
Descriptor: Biotin carboxylase
Authors:Shen, J, Wu, W, Xu, X.
Deposit date:2023-01-08
Release date:2024-01-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Chloroflexus aurantiacus acetyl-CoA carboxylase evolves fused biotin carboxylase and biotin carboxyl carrier protein to complete carboxylation activity.
Mbio, 15, 2024
8HZ4
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BU of 8hz4 by Molmil
The tetrameric structure of biotin carboxylase from Chloroflexus aurantiacus in complex with bicarbonate
Descriptor: Biotin carboxylase
Authors:Shen, J, Wu, W, Xu, X.
Deposit date:2023-01-08
Release date:2024-01-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Chloroflexus aurantiacus acetyl-CoA carboxylase evolves fused biotin carboxylase and biotin carboxyl carrier protein to complete carboxylation activity.
Mbio, 15, 2024
5JJD
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BU of 5jjd by Molmil
crystal structure of the ceramide transfer protein PH and START domain complex
Descriptor: Collagen type IV alpha-3-binding protein, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
Authors:Prashek, J, Bouyain, S, Yao, X.
Deposit date:2016-04-23
Release date:2017-07-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Interaction between the PH and START domains of ceramide transfer protein competes with phosphatidylinositol 4-phosphate binding by the PH domain.
J. Biol. Chem., 292, 2017
6WF2
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BU of 6wf2 by Molmil
Crystal structure of mouse SCD1 with a diiron center
Descriptor: Acyl-CoA desaturase 1, FE (III) ION, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)
Authors:Shen, J, Zhou, M.
Deposit date:2020-04-03
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure and Mechanism of a Unique Diiron Center in Mammalian Stearoyl-CoA Desaturase.
J.Mol.Biol., 432, 2020
7S8U
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BU of 7s8u by Molmil
Cryo-EM structure of a mammalian peptide transporter (PepT1/slc15a1) in nanodisc
Descriptor: Solute carrier family 15 member 1
Authors:Shen, J, Zhou, M.
Deposit date:2021-09-19
Release date:2022-07-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Extracellular domain of PepT1 interacts with TM1 to facilitate substrate transport.
Structure, 30, 2022
8DL7
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BU of 8dl7 by Molmil
Cryo-EM structure of human ferroportin/slc40 bound to minihepcidin PR73 in nanodisc
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 11F9 heavy-chain, 11F9 light-chain, ...
Authors:Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
Deposit date:2022-07-07
Release date:2022-12-07
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of ferroportin inhibition by minihepcidin PR73.
Plos Biol., 21, 2023
8DL8
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BU of 8dl8 by Molmil
Cryo-EM structure of human ferroportin/slc40 bound to Co2+ in nanodisc
Descriptor: 11F9 heavy-chain, 11F9 light-chain, COBALT (II) ION, ...
Authors:Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
Deposit date:2022-07-07
Release date:2022-12-07
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of ferroportin inhibition by minihepcidin PR73.
Plos Biol., 21, 2023
8DL6
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BU of 8dl6 by Molmil
Cryo-EM structure of human ferroportin/slc40 bound to Ca2+ in nanodisc
Descriptor: 11F9 heavy-chain, 11F9 light-chain, CALCIUM ION, ...
Authors:Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
Deposit date:2022-07-07
Release date:2023-01-25
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mechanism of Ca 2+ transport by ferroportin.
Elife, 12, 2023
6VYH
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BU of 6vyh by Molmil
Cryo-EM structure of SLC40/ferroportin in complex with Fab
Descriptor: 11F9 heavy-chain, 11F9 light-chain, COBALT (II) ION, ...
Authors:Shen, J, Ren, Z, Pan, Y, Gao, S, Yan, N, Zhou, M.
Deposit date:2020-02-26
Release date:2020-11-11
Last modified:2022-09-28
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of ion transport and inhibition in ferroportin.
Nat Commun, 11, 2020

223790

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