Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 256 results

6NTP
DownloadVisualize
BU of 6ntp by Molmil
PTP1B Domain of PTP1B-LOV2 Chimera
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1,NPH1-1
Authors:Hongdusit, A, Sankaran, B, Zwart, P.H, Fox, J.M.
Deposit date:2019-01-30
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Minimally disruptive optical control of protein tyrosine phosphatase 1B.
Nat Commun, 11, 2020
3TMH
DownloadVisualize
BU of 3tmh by Molmil
Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1
Descriptor: A-kinase anchor protein 10, mitochondrial, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, ...
Authors:Sarma, G.N, Phan, R.H, Sankaran, B, Taylor, S.S.
Deposit date:2011-08-31
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Differential mode of D-AKAP2 to PKA isoforms: Insights from D-AKAP2 PKA RII PDZK1 ternary complex structure
To be Published
6CWV
DownloadVisualize
BU of 6cwv by Molmil
Protein Tyrosine Phosphatase 1B A122S mutant
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Hjortness, M, Zwart, P, Sankaran, B, Fox, J.M.
Deposit date:2018-03-31
Release date:2018-10-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.98002291 Å)
Cite:Evolutionarily Conserved Allosteric Communication in Protein Tyrosine Phosphatases.
Biochemistry, 57, 2018
3HVV
DownloadVisualize
BU of 3hvv by Molmil
Escherichia coli Thiol peroxidase (Tpx) peroxidatic cysteine to serine mutant (C61S)
Descriptor: Thiol peroxidase
Authors:Hall, A, Sankaran, B, Karplus, P.A.
Deposit date:2009-06-16
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural changes common to catalysis in the Tpx peroxiredoxin subfamily.
J.Mol.Biol., 393, 2009
8U5W
DownloadVisualize
BU of 8u5w by Molmil
De novo designed pentameric helical bundle protein
Descriptor: WSHC5
Authors:Bick, M.J, Xu, C, Sankaran, B, Baker, D.
Deposit date:2023-09-13
Release date:2024-09-25
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:De novo Design of Near Infrared Fluorescent Proteins
To Be Published
4QX5
DownloadVisualize
BU of 4qx5 by Molmil
Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
8FBZ
DownloadVisualize
BU of 8fbz by Molmil
Crystal Structure of apo human Glutathione Synthetase Y270E
Descriptor: GLYCEROL, Glutathione synthetase, SULFATE ION
Authors:Stanford, S.M, Santelli, E, Sankaran, B, Murali, R, Bottini, N.
Deposit date:2022-11-30
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Targeting prostate tumor low-molecular weight tyrosine phosphatase for oxidation-sensitizing therapy.
Sci Adv, 10, 2024
4WV9
DownloadVisualize
BU of 4wv9 by Molmil
Crystal structure of acetylcholine binding protein (AChBP) from Aplysia Californica in complex with click chemistry compound (3-exo)-8,8-dimethyl-3-[4-(pyridin-4-yl)-1H-1,2,3-triazol-1-yl]-8-azoniabicyclo[3.2.1]octane
Descriptor: (3-exo)-8,8-dimethyl-3-[4-(pyridin-4-yl)-1H-1,2,3-triazol-1-yl]-8-azoniabicyclo[3.2.1]octane, Soluble acetylcholine receptor
Authors:Talley, T.T, Bobango, J, Wu, J.M, Sankaran, B.
Deposit date:2014-11-04
Release date:2015-04-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of acetylcholine binding protein (AChBP) from Aplysia Californica in complex with click chemistry compound.
To Be Published
6MSR
DownloadVisualize
BU of 6msr by Molmil
Crystal structure of pRO-2.5
Descriptor: pRO-2.5
Authors:Bick, M.J, Sankaran, B, Boyken, S.E, Baker, D.
Deposit date:2018-10-17
Release date:2019-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:De novo design of tunable, pH-driven conformational changes.
Science, 364, 2019
6CWU
DownloadVisualize
BU of 6cwu by Molmil
Protein Tyrosine Phosphatase 1B F135Y mutant
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Hjortness, M, Zwart, P, Sankaran, B, Fox, J.M.
Deposit date:2018-03-31
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Evolutionarily Conserved Allosteric Communication in Protein Tyrosine Phosphatases.
Biochemistry, 57, 2018
8DJY
DownloadVisualize
BU of 8djy by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one
Descriptor: (2M)-6-bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one, MANGANESE (II) ION, Polymerase acidic protein
Authors:Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
Deposit date:2022-07-01
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8DHN
DownloadVisualize
BU of 8dhn by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one
Descriptor: (2P)-6-bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one, MANGANESE (II) ION, PA endonuclease
Authors:Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
Deposit date:2022-06-27
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8DJV
DownloadVisualize
BU of 8djv by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-3-hydroxy-N-methoxy-4-oxo-1,4-dihydropyridine-2-carboxamide
Descriptor: 6-bromo-3-hydroxy-N-methoxy-4-oxo-1,4-dihydropyridine-2-carboxamide, MANGANESE (II) ION, Polymerase acidic protein
Authors:Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
Deposit date:2022-07-01
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
3HVX
DownloadVisualize
BU of 3hvx by Molmil
Escherichia coli Thiol peroxidase (Tpx) resolving cysteine to serine mutant (C95S) with an intermolecular disulfide bond
Descriptor: CHLORIDE ION, Thiol peroxidase
Authors:Hall, A, Sankaran, B, Karplus, P.A.
Deposit date:2009-06-16
Release date:2009-10-20
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural changes common to catalysis in the Tpx peroxiredoxin subfamily.
J.Mol.Biol., 393, 2009
4RVA
DownloadVisualize
BU of 4rva by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for deacylation
Descriptor: BICARBONATE ION, Beta-lactamase TEM
Authors:Stojanoski, V, Chow, D.-C, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
Deposit date:2014-11-25
Release date:2015-03-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4397 Å)
Cite:A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
4RX3
DownloadVisualize
BU of 4rx3 by Molmil
A triple mutant in the omega-loop of TEM-1 beta-lactamase changes the substrate profile via a large conformational change and an altered general base for catalysis
Descriptor: Beta-lactamase TEM, CITRATE ANION
Authors:Stojanoski, V, Chow, D, Hu, L, Sankaran, B, Gilbert, H, Prasad, B.V.V, Palzkill, T.
Deposit date:2014-12-08
Release date:2015-03-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:A Triple Mutant in the Omega-loop of TEM-1 beta-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis.
J.Biol.Chem., 290, 2015
8ERW
DownloadVisualize
BU of 8erw by Molmil
Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor: C2HR4_8r
Authors:Bick, M.J, Parmeggiani, F, Bethel, N.P, Sankaran, B, Baker, D.
Deposit date:2022-10-12
Release date:2023-08-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
5C67
DownloadVisualize
BU of 5c67 by Molmil
Human Mesotrypsin in complex with amyloid precursor protein inhibitor variant APPI-M17G/I18F/F34V
Descriptor: Amyloid beta A4 protein, Trypsin-3
Authors:Kayode, O, Sankaran, B, Radisky, E.S.
Deposit date:2015-06-22
Release date:2016-05-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Combinatorial protein engineering of proteolytically resistant mesotrypsin inhibitors as candidates for cancer therapy.
Biochem.J., 473, 2016
5CB9
DownloadVisualize
BU of 5cb9 by Molmil
Crystal structure of C-As lyase with mercaptoethonal
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Glyoxalase/bleomycin resistance protein/dioxygenase, ...
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-06-30
Release date:2016-07-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of C-As lyase with mercaptoethonal
To Be Published
5C6X
DownloadVisualize
BU of 5c6x by Molmil
Crystal structure of C-As lyase with Co(II)
Descriptor: COBALT (II) ION, GLYCEROL, Glyoxalase/bleomycin resistance protein/dioxygenase, ...
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-06-23
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of C-As lyase with Co(II)
To Be Published
8G0W
DownloadVisualize
BU of 8g0w by Molmil
Crystal structure of human norovirus GII.4 P domain in complex with Nanobody M4
Descriptor: Nanobody M4, VP1
Authors:Hu, L, Salmen, W, Sankaran, B, Prasad, B.V.V.
Deposit date:2023-02-01
Release date:2023-10-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Crystal structure of human norovirus GII.4 P domain in complex with Nanobody M4
To Be Published
5DRH
DownloadVisualize
BU of 5drh by Molmil
Crystal structure of apo C-As lyase
Descriptor: Glyoxalase/bleomycin resistance protein/dioxygenase, SODIUM ION
Authors:Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
Deposit date:2015-09-15
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of apo C-As lyase
To Be Published
6XT4
DownloadVisualize
BU of 6xt4 by Molmil
C3_HD-1069 (1BH-69) - fusion protein of helical bundle and repeat protein
Descriptor: 1BH_69
Authors:Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
Deposit date:2020-07-17
Release date:2020-12-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
5BRX
DownloadVisualize
BU of 5brx by Molmil
X-ray crystal structure of Aplysia californica (Ac-AChBP) in complex with 2-pyridyl azatricyclo[3.3.1.13,7]decane; 2-pyridylazaadamantane; 2-Aza (TI-8480)
Descriptor: (2R,3S,5R,7S)-2-(pyridin-3-yl)-1-azatricyclo[3.3.1.1~3,7~]decane, SULFATE ION, Soluble acetylcholine receptor, ...
Authors:Bobango, J, Sankaran, B, Park, J.F, Wu, J, Talley, T.T.
Deposit date:2015-06-01
Release date:2015-06-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Comparisons of Binding Affinities for Neuronal Nicotinic Receptors (NNRs) and AChBPs
To Be Published
6CYU
DownloadVisualize
BU of 6cyu by Molmil
Crystal structure of CTX-M-14 S70G/N106S/D240G beta-lactamase in complex with hydrolyzed cefotaxime
Descriptor: (2R)-2-[(R)-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}(carboxy)methyl]-5-methylidene-5,6-dihydro -2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase
Authors:Patel, M.P, Hu, L, Sankaran, B, Brown, C, Prasad, B.V.V, Palzkill, T.
Deposit date:2018-04-06
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Synergistic effects of functionally distinct substitutions in beta-lactamase variants shed light on the evolution of bacterial drug resistance.
J. Biol. Chem., 293, 2018

234440

건을2025-04-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon