Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27191 results

8F28
DownloadVisualize
BU of 8f28 by Molmil
Lysozyme Structures from Single-Entity Crystallization Method NanoAC
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Yang, R, Sankaran, B, Ogbonna, E, Wang, G.
Deposit date:2022-11-07
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Single-Entity Method for Actively Controlled Nucleation and High-Quality Protein Crystal Synthesis.
Anal.Chem., 95, 2023
7A0M
DownloadVisualize
BU of 7a0m by Molmil
TSC1 N-terminal domain
Descriptor: SULFATE ION, TSC1 N-terminal domain
Authors:Zech, R, Kiontke, S, Kuemmel, D.
Deposit date:2020-08-10
Release date:2021-05-26
Last modified:2021-07-14
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:TSC1 binding to lysosomal PIPs is required for TSC complex translocation and mTORC1 regulation.
Mol.Cell, 81, 2021
6ZVQ
DownloadVisualize
BU of 6zvq by Molmil
Complex between SMAD2 MH2 domain and peptide from Ski corepressor
Descriptor: D(-)-TARTARIC ACID, GLYCEROL, Mothers against decapentaplegic homolog 2, ...
Authors:Purkiss, A.G, Kjaer, S, George, R, Hill, C.S.
Deposit date:2020-07-27
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Mutations in SKI in Shprintzen-Goldberg syndrome lead to attenuated TGF-beta responses through SKI stabilization.
Elife, 10, 2021
5HYM
DownloadVisualize
BU of 5hym by Molmil
3-Hydroxybenzoate 6-hydroxylase from Rhodococcus jostii in complex with phosphatidylinositol
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Phosphatidylinositol, ...
Authors:Orru, R, Montersino, S, Mattevi, A, van Berkel, W.J.H.
Deposit date:2016-02-01
Release date:2017-02-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:3-Hydroxybenzoate 6-Hydroxylase from Rhodococcus jostii RHA1 Contains a Phosphatidylinositol Cofactor.
Front Microbiol, 8, 2017
6XUN
DownloadVisualize
BU of 6xun by Molmil
Ab 5b1 bound to CA19-9
Descriptor: GLYCEROL, Heavy chain, Light chain, ...
Authors:Diskin, R, Borenstein-Katz, A.
Deposit date:2020-01-20
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Biomolecular Recognition of the Glycan Neoantigen CA19-9 by Distinct Antibodies.
J.Mol.Biol., 433, 2021
5HT7
DownloadVisualize
BU of 5ht7 by Molmil
Crystal structure of a transition-metal-ion-binding betagamma-crystallin from Methanosaeta thermophila
Descriptor: FE (II) ION, Uncharacterized protein
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.862 Å)
Cite:A Transition Metal-Binding, Trimeric beta gamma-Crystallin from Methane-Producing Thermophilic Archaea, Methanosaeta thermophila
Biochemistry, 56, 2017
6EOP
DownloadVisualize
BU of 6eop by Molmil
DPP8 - SLRFLYEG, space group 20
Descriptor: CALCIUM ION, CITRATE ANION, Dipeptidyl peptidase 8, ...
Authors:Ross, B.R, Huber, R.
Deposit date:2017-10-10
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7YZ4
DownloadVisualize
BU of 7yz4 by Molmil
Mouse endoribonuclease Dicer (composite structure)
Descriptor: Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
6EOT
DownloadVisualize
BU of 6eot by Molmil
DPP8 - SLRFLYEG, space group 19
Descriptor: Dipeptidyl peptidase 8, SER-LEU-ARG-PHE-LEU-TYR-GLU-GLY
Authors:Ross, B.R, Huber, R.
Deposit date:2017-10-10
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7YYM
DownloadVisualize
BU of 7yym by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Descriptor: 59-nt precursor of miR-15a, Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (4.19 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
6RTY
DownloadVisualize
BU of 6rty by Molmil
Crystal structure of the Patched ectodomain in complex with nanobody NB64
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Llama-derived nanobody NB64, Protein patched homolog 1
Authors:Rudolf, A.F, Kowatsch, C, El Omari, K, Malinauskas, T, Kinnebrew, M, Ansell, T.B, Bishop, B, Pardon, E, Schwab, R.A, Qian, M, Duman, R, Covey, D.F, Steyaert, J, Wagner, A, Sansom, M.S.P, Rohatgi, R, Siebold, C.
Deposit date:2019-05-27
Release date:2019-10-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism.
Nat.Chem.Biol., 15, 2019
7YYN
DownloadVisualize
BU of 7yyn by Molmil
Mammalian Dicer in the dicing state with pre-miR-15a substrate
Descriptor: 59-nt precursor of miR-15a, Isoform 2 of Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (6.21 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
1OPX
DownloadVisualize
BU of 1opx by Molmil
Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate
Descriptor: NONAETHYLENE GLYCOL, SULFATE ION, virB11 homolog
Authors:Savvides, S.N, Yeo, H.J, Beck, M.R, Blaesing, F, Lurz, R, Lanka, E, Buhrdorf, R, Fischer, W, Haas, R, Waksman, G.
Deposit date:2003-03-06
Release date:2003-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
Embo J., 22, 2003
6UL6
DownloadVisualize
BU of 6ul6 by Molmil
Crystal Structure of BoNT/A-LCHn domain in complex with VNA ciA-D12/11/ciA-B5 and VHH ciA-H7
Descriptor: BoNT/A, ciA-D12/11/ciA-B5, ciA-H7
Authors:Lam, K, Jin, R.
Deposit date:2019-10-07
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.02000213 Å)
Cite:Structural Insights into Rational Design of Single-Domain Antibody-Based Antitoxins against Botulinum Neurotoxins
Cell Rep, 30, 2020
6UI1
DownloadVisualize
BU of 6ui1 by Molmil
Crystal structure of BoNT/A-LCHn domain in complex with VHH ciA-D12, ciA-B5, and ciA-H7
Descriptor: BoNT/A, ciA-B5, ciA-D12, ...
Authors:Lam, K, Jin, R.
Deposit date:2019-09-29
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.20000863 Å)
Cite:Structural Insights into Rational Design of Single-Domain Antibody-Based Antitoxins against Botulinum Neurotoxins
Cell Rep, 30, 2020
6EOO
DownloadVisualize
BU of 6eoo by Molmil
DPP8 - Apo, space group 20
Descriptor: Dipeptidyl peptidase 8
Authors:Ross, B.R, Huber, R.
Deposit date:2017-10-10
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7ADI
DownloadVisualize
BU of 7adi by Molmil
KirBac3.1 W46R: role of a highly conserved tryptophan at the membrane-water interface of Kir channel
Descriptor: Inward rectifier potassium channel Kirbac3.1, MAGNESIUM ION, POTASSIUM ION
Authors:Venien-Bryan, C, Fagnen, C, De Zorzi, R, Bannwarth, L, Oubella, I, Haouz, A.
Deposit date:2020-09-15
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Integrative Study of the Structural and Dynamical Properties of a KirBac3.1 Mutant: Functional Implication of a Highly Conserved Tryptophan in the Transmembrane Domain.
Int J Mol Sci, 23, 2021
6UC6
DownloadVisualize
BU of 6uc6 by Molmil
Crystal structure of BoNT/B receptor-binding domain in complex with VHH JLI-H11
Descriptor: Botulinum neurotoxin type B, JLI-H11
Authors:Lam, K, Jin, R.
Deposit date:2019-09-15
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.32005882 Å)
Cite:Structural Insights into Rational Design of Single-Domain Antibody-Based Antitoxins against Botulinum Neurotoxins
Cell Rep, 30, 2020
6XKS
DownloadVisualize
BU of 6xks by Molmil
Crystal structure of domain A from the periplasmic Lysine-, Arginine-, Ornithine-binding protein (LAO) of Salmonella typhimurium
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, Histidine ABC transporter substrate-binding protein HisJ
Authors:Romero-Romero, S, Berrocal, T, Vergara, R, Espinoza-Perez, G, Rodriguez-Romero, A.
Deposit date:2020-06-27
Release date:2021-07-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Thermodynamic and kinetic analysis of the LAO binding protein and its isolated domains reveal non-additivity in stability, folding and function.
Febs J., 2023
6RTX
DownloadVisualize
BU of 6rtx by Molmil
Crystal structure of the Patched-1 (PTCH1) ectodomain 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Protein patched homolog 1
Authors:Rudolf, A.F, Kowatsch, C, El Omari, K, Malinauskas, T, Kinnebrew, M, Ansell, T.B, Bishop, B, Pardon, E, Schwab, R.A, Qian, M, Duman, R, Covey, D.F, Steyaert, J, Wagner, A, Sansom, M.S.P, Rohatgi, R, Siebold, C.
Deposit date:2019-05-27
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism.
Nat.Chem.Biol., 15, 2019
6RVD
DownloadVisualize
BU of 6rvd by Molmil
Revised cryo-EM structure of the human 2:1 Ptch1-Shh complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:El Omari, K, Rudolf, A.F, Kowatsch, C, Malinauskas, T, Kinnebrew, M, Ansell, T.B, Bishop, B, Pardon, E, Schwab, R.A, Qian, M, Duman, R, Covey, D.F, Steyaert, J, Wagner, A, Sansom, M.S.P, Rohatgi, R, Siebold, C.
Deposit date:2019-05-31
Release date:2019-10-02
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism.
Nat.Chem.Biol., 15, 2019
6V8Z
DownloadVisualize
BU of 6v8z by Molmil
VRC03 and 10-1074 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure
Descriptor: 10-1074 Fab Heavy Chain, 10-1074 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Henderson, R, Acharya, P.
Deposit date:2019-12-12
Release date:2020-02-05
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements.
Nat Commun, 11, 2020
4QI4
DownloadVisualize
BU of 4qi4 by Molmil
Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase, MtDH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, ...
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
5IIG
DownloadVisualize
BU of 5iig by Molmil
Structure of the SPX-TTM domain fragment of the yeast inorganic polyphophate polymerase Vtc4 (form A).
Descriptor: SULFATE ION, Vacuolar transporter chaperone 4
Authors:Wild, R, Hothorn, M.
Deposit date:2016-03-01
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Control of eukaryotic phosphate homeostasis by inositol polyphosphate sensor domains.
Science, 352, 2016
6EOS
DownloadVisualize
BU of 6eos by Molmil
DPP8 - Apo, space group 19
Descriptor: Dipeptidyl peptidase 8
Authors:Ross, B.R, Huber, R.
Deposit date:2017-10-10
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon