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PDB: 136 results

2R7P
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Crystal Structure of H225A NSP2 and AMPPNP complex
Descriptor: Non-structural RNA-binding protein 35, PHOSPHATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kumar, M, Prasad, B.V.V.
Deposit date:2007-09-09
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
J.Virol., 81, 2007
2R7C
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Crystallographic and biochemical analysis of rotavirus NSP2 with nucleotides reveals an NDP kinase like activity
Descriptor: Non-structural RNA-binding protein 35, PHOSPHATE ION
Authors:Kumar, M, Prasad, B.V.V.
Deposit date:2007-09-07
Release date:2007-10-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
J.Virol., 81, 2007
2R8F
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Crystal structure of H225A NSP2 and ATP-gS complex
Descriptor: Non-structural RNA-binding protein 35, PHOSPHATE ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Kumar, M, Prasad, B.V.V.
Deposit date:2007-09-10
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
J.Virol., 81, 2007
6OQE
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X-ray structure of H6N6-NS1 delta(80-84) R38A K41A mutant
Descriptor: Non-structural protein 1
Authors:Mitra, S, Kumar, D, Hu, L, Prasad, B.V.V.
Deposit date:2019-04-26
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.899 Å)
Cite:Influenza A Virus Protein NS1 Exhibits Strain-Independent Conformational Plasticity.
J.Virol., 93, 2019
5HAR
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BU of 5har by Molmil
OXA-163 beta-lactamase - S70G mutant
Descriptor: ACETATE ION, Beta-lactamase, CHLORIDE ION
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
5HAI
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P99 beta-lactamase mutant - S64G
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
5HAQ
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OXa-48 beta-lactamase mutant - S70G
Descriptor: Beta-lactamase, CADMIUM ION, FORMIC ACID
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
5HAP
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OXA-48 beta-lactamase - S70A mutant
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, Beta-lactamase, ...
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
3F5T
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X-ray Structure of H5N1 NS1
Descriptor: Nonstructural protein 1
Authors:Bornholdt, Z.A, Prasad, B.V.V.
Deposit date:2008-11-04
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray structure of NS1 from a highly pathogenic H5N1 influenza virus
Nature, 456, 2008
2GU0
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Crystal Structure of Human Rotavirus NSP2 (Group C / Bristol Strain)
Descriptor: Nonstructural protein 2
Authors:Jiang, X, Prasad, B.V.V.
Deposit date:2006-04-28
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-function analysis of rotavirus NSP2 octamer by using a novel complementation system
J.Virol., 80, 2006
2GX9
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X-ray structure of influenza virus NS1 effector domain
Descriptor: NS1 Effector Domain, THIOCYANATE ION
Authors:Bornholdt, Z.A, Prasad, B.V.
Deposit date:2006-05-08
Release date:2006-05-30
Last modified:2020-09-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of influenza virus NS1 effector domain.
Nat.Struct.Mol.Biol., 13, 2006
3M8L
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Crystal Structure Analysis of the Feline Calicivirus Capsid Protein
Descriptor: Capsid protein
Authors:Zhou, Y, Prasad, B.V.V.
Deposit date:2010-03-18
Release date:2010-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Conformational changes in the capsid of a calicivirus upon interaction with its functional receptor
J.Virol., 84, 2010
6NRL
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BU of 6nrl by Molmil
X-ray structure of H6N6-NS1 delta(80-84) R38A K41A E71G mutant
Descriptor: Non-structural protein 1
Authors:Mitra, S, Kumar, D, Hu, L, Prasad, B.V.V.
Deposit date:2019-01-23
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Influenza A Virus Protein NS1 Exhibits Strain-Independent Conformational Plasticity.
J.Virol., 93, 2019
6O01
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BU of 6o01 by Molmil
X-ray structure of H5N1-NS1 R38A K41A G71E mutant
Descriptor: Non-structural protein 1
Authors:Mitra, S, Kumar, D, Hu, L, Prasad, B.V.V.
Deposit date:2019-02-14
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Influenza A Virus Protein NS1 Exhibits Strain-Independent Conformational Plasticity.
J.Virol., 93, 2019
7UON
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CTX-M-14 Y105W mutant
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Judge, A, Hu, L, Sankaran, B, Van Riper, J, Prasad, B.V.V, Palzkill, T.
Deposit date:2022-04-13
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mapping the determinants of catalysis and substrate specificity of the antibiotic resistance enzyme CTX-M beta-lactamase.
Commun Biol, 6, 2023
3QI0
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Structural, thermodynamic and kinetic analysis of the picomolar binding affinity interaction of the beta-lactamase inhibitor protein-II (BLIP-II) with class A beta-lactamases
Descriptor: Beta-lactamase inhibitory protein II, SULFATE ION
Authors:Brown, N.G, Chow, D.C, Sankaran, B, Zwart, P, Prasad, B.V.V, Palzkill, T.
Deposit date:2011-01-26
Release date:2011-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of the binding forces driving the tight interactions between beta-lactamase inhibitory protein-II (BLIP-II) and class A beta-lactamases.
J.Biol.Chem., 286, 2011
5K4P
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Catalytic Domain of MCR-1 phosphoethanolamine transferase
Descriptor: Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION, sorbitol
Authors:Stojanoski, V, Palzkill, T, Prasad, B.V.V, Sankaran, B.
Deposit date:2016-05-21
Release date:2016-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Structure of the catalytic domain of the colistin resistance enzyme MCR-1.
Bmc Biol., 14, 2016
5KW9
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BU of 5kw9 by Molmil
Structural Basis for Norovirus Neutralization by a HBGA Blocking Human IgA Antibody
Descriptor: Capsid protein VP1, IgA Light chain, IgA(VH)-IgG(CH) heavy chain Fab fragment, ...
Authors:Shanker, S, Prasad, B.V.V.
Deposit date:2016-07-15
Release date:2016-10-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for norovirus neutralization by an HBGA blocking human IgA antibody.
Proc.Natl.Acad.Sci.USA, 113, 2016
2GE8
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Structure of the C-terminal dimerization domain of infectious bronchitis virus nucleocapsid protein
Descriptor: Nucleocapsid protein
Authors:Jayaram, H, Fan, H, Bowman, B.R, Ooi, A, Jayaram, J, Collisson, E.W, Lescar, J, Prasad, B.V.
Deposit date:2006-03-18
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structures of the N- and C-terminal domains of a coronavirus nucleocapsid protein: implications for nucleocapsid formation.
J.Virol., 80, 2006
2FYR
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BU of 2fyr by Molmil
Crystal Structure of Norwalk Virus Protease grown in the presence of AEBSF
Descriptor: CHLORIDE ION, Chymotrypsin-like cysteine proteinase, MAGNESIUM ION
Authors:Zeitler, C.E, Estes, M.K, Venkataram Prasad, B.V.
Deposit date:2006-02-08
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.
J.Virol., 80, 2006
2FYQ
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Crystal Structure of the Norwalk Virus Protease
Descriptor: CHLORIDE ION, Chymotrypsin-like cysteine proteinase, PHOSPHATE ION
Authors:Zeitler, C.E, Estes, M.K, Venkataram Prasad, B.V.
Deposit date:2006-02-08
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.
J.Virol., 80, 2006
2GEC
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Structure of the N-terminal domain of avian infectious bronchitis virus nucleocapsid protein (strain Gray) in a novel dimeric arrangement
Descriptor: Nucleocapsid protein
Authors:Jayaram, H, Fan, H, Bowman, B.R, Ooi, A, Jayaram, J, Collisson, E.W, Lescar, J, Prasad, B.V.
Deposit date:2006-03-19
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:X-ray structures of the N- and C-terminal domains of a coronavirus nucleocapsid protein: implications for nucleocapsid formation.
J.Virol., 80, 2006
2GE7
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Structure of the C-terminal dimerization domain of infectious bronchitis virus nucleocapsid protein
Descriptor: Nucleocapsid protein
Authors:Jayaram, H, Fan, H, Bowman, B.R, Ooi, A, Jayaram, J, Collisson, E.W, Lescar, J, Prasad, B.V.
Deposit date:2006-03-18
Release date:2006-06-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structures of the N- and C-terminal domains of a coronavirus nucleocapsid protein: implications for nucleocapsid formation.
J.Virol., 80, 2006
1L9V
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Non Structural protein encoded by gene segment 8 of rotavirus (NSP2), an NTPase, ssRNA binding and nucleic acid helix-destabilizing protein
Descriptor: Rotavirus-NSP2
Authors:Jayaram, H, Taraporewala, Z, Patton, J.T, Prasad, B.V.
Deposit date:2002-03-26
Release date:2002-06-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Rotavirus protein involved in genome replication and packaging exhibits a HIT-like fold.
Nature, 417, 2002
7S5S
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CTX-M-15 WT in complex with BLIP WT
Descriptor: Beta-lactamase, Beta-lactamase inhibitory protein
Authors:Lu, S, Palzkill, T, Hu, L.Y, Prasad, B.V.V, Sankaran, B.
Deposit date:2021-09-11
Release date:2022-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An active site loop toggles between conformations to control antibiotic hydrolysis and inhibition potency for CTX-M beta-lactamase drug-resistance enzymes.
Nat Commun, 13, 2022

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