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PDB: 67 件

6SX6
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Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs
分子名称: GCn
著者Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
登録日2019-09-25
公開日2020-07-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6SYK
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Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair
分子名称: GCnCG
著者Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
登録日2019-09-30
公開日2020-07-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6SX3
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Intercalation of heterocyclic ligand between quartets in G-rich tetrahelical structure
分子名称: VK2, ~{N}2,~{N}6-bis(1-methylquinolin-1-ium-3-yl)pyridine-2,6-dicarboxamide
著者Kotar, A, Kocman, V, Plavec, J.
登録日2019-09-24
公開日2019-12-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intercalation of a Heterocyclic Ligand between Quartets in a G-Rich Tetrahelical Structure.
Chemistry, 26, 2020
6TR2
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Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
著者Wang, B, Frelih, T, Plavec, J, Sket, P.
登録日2019-12-17
公開日2020-01-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
6GH0
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Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure
分子名称: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3')
著者Kotar, A, Rigo, R, Sissi, C, Plavec, J.
登録日2018-05-04
公開日2019-01-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.
Nucleic Acids Res., 47, 2019
6FNV
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Solution structure of mule deer prion protein with polymorphism S138
分子名称: Major prion protein
著者Slapsak, U, Ilc, G, Plavec, J.
登録日2018-02-05
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of mule deer prion protein with polymorphism S138
To Be Published
5M1W
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Structure of a stable G-hairpin
分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
著者Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L.
登録日2016-10-11
公開日2017-03-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
5L6R
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PrP226* - Solution-state NMR structure of truncated human prion protein
分子名称: Major prion protein
著者Kovac, V, Zupancic, B, Ilc, G, Curin Serbec, V, Plavec, J.
登録日2016-05-31
公開日2016-10-05
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Truncated prion protein PrP226* - A structural view on its role in amyloid disease.
Biochem. Biophys. Res. Commun., 484, 2017
5LQG
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A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M2L
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Structure of DNA tetrameric AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-13
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LQH
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A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-01-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M1L
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Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-09
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5OPH
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G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2017-08-09
公開日2018-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
2JXV
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BU of 2jxv by Molmil
Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans
分子名称: RNA (33-MER)
著者Cevec, M, Thibaudeau, C, Plavec, J.
登録日2007-11-30
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KUN
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Three dimensional structure of HuPrP(90-231 M129 Q212P)
分子名称: Major prion protein
著者Ilc, G, Giachin, G, Jaremko, M, Jaremko, L, Zhukov, I, Plavec, J, Legname, G, Benetti, F.
登録日2010-02-23
公開日2010-08-25
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KPV
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NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans
分子名称: RNA (34-MER)
著者Cevec, M, Thibaudeau, C, Plavec, J.
登録日2009-10-20
公開日2010-08-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010
2KWG
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Solution structure of a fully modified 2'-F/2'-OMe siRNA construct
分子名称: 5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3', 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
著者Podbevsek, P, Bhat, B, Plavec, J.
登録日2010-04-09
公開日2010-07-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.
Nucleic Acids Res., 38, 2010
2LEJ
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human prion protein mutant HuPrP(90-231, M129, V210I)
分子名称: Major prion protein
著者Biljan, I, Ilc, G, Giachin, G, Raspadori, A, Zhukov, I, Plavec, J, Legname, G.
登録日2011-06-16
公開日2011-08-17
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation.
J.Mol.Biol., 412, 2011
2LEE
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BU of 2lee by Molmil
Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
著者Trajkovski, M, Plavec, J, Webba da Silva, M.
登録日2011-06-15
公開日2012-03-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2N2D
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Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2015-05-06
公開日2015-09-23
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
5MTA
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G-quadruplex formed within promoters of Plasmodium falciparum B var genes
分子名称: UpsB-Q-1, DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5MTG
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G-quadruplex formed within promoters of Plasmodium falciparum B var genes - form I
分子名称: UpsB-Q-1 DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5NYS
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M2 G-quadruplex dilute solution
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
著者Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
登録日2017-05-11
公開日2018-04-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5NYT
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M2 G-quadruplex 20 wt% ethylene glycol
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
著者Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
登録日2017-05-11
公開日2018-04-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5LSN
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SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
分子名称: RNA (29-MER)
著者Podbevsek, P, Plavec, J.
登録日2016-09-05
公開日2017-09-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.
Sci Rep, 8, 2018

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