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PDB: 45955 results

8QT9
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BU of 8qt9 by Molmil
Cryo-EM structure of stably reduced Streptococcus pneumoniae NADPH oxidase in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FAD-binding FR-type domain-containing protein, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Dubach, V.R.A, San Segundo-Acosta, P, Murphy, B.J.
Deposit date:2023-10-12
Release date:2024-07-24
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase.
Nat.Struct.Mol.Biol., 2024
5Z4B
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BU of 5z4b by Molmil
GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Protein LG
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
2YNP
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BU of 2ynp by Molmil
yeast betaprime COP 1-604 with KTKTN motif
Descriptor: COATOMER SUBUNIT BETA', KTKTN MOTIF
Authors:Jackson, L.P, Lewis, M, Kent, H.M, Edeling, M.A, Evans, P.R, Duden, R, Owen, D.J.
Deposit date:2012-10-17
Release date:2012-12-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.962 Å)
Cite:Molecular Basis for Recognition of Dilysine Trafficking Motifs by Copi.
Dev.Cell, 23, 2012
8B5F
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BU of 8b5f by Molmil
Human cathepsin B in complex with the carbamate inhibitor 31
Descriptor: (2S)-2-[[(2S)-2-[[3-chloranyl-4-[[3-phenyl-2-(phenylmethyl)propanoyl]amino]phenoxy]carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid, 1,2-ETHANEDIOL, Cathepsin B
Authors:Rubesova, P, Guetschow, M, Mares, M.
Deposit date:2022-09-22
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Human cathepsin B in complex with the carbamate inhibitor 31
To Be Published
4KCV
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BU of 4kcv by Molmil
Pyruvate kinase (PYK) from Trypanosoma brucei soaked with 2-oxoglutaric acid
Descriptor: 2,6-di-O-phosphono-beta-D-fructofuranose, 2-OXOGLUTARIC ACID, GLYCEROL, ...
Authors:Zhong, W, Morgan, H.P, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
Deposit date:2013-04-24
Release date:2014-01-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Pyruvate kinases have an intrinsic and conserved decarboxylase activity.
Biochem.J., 458, 2014
6HGP
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BU of 6hgp by Molmil
Crystal Structure of Human APRT wild type in complex with Phosphate ion.
Descriptor: Adenine phosphoribosyltransferase, PHOSPHATE ION
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2018-08-23
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.
J.Biol.Chem., 294, 2019
8QTA
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BU of 8qta by Molmil
Cryo-EM structure of Streptococcus pneumoniae NADPH oxidase F397A mutant in complex with NADPH
Descriptor: FAD-binding FR-type domain-containing protein, FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Dubach, V.R.A, San Segundo-Acosta, P, Murphy, B.J.
Deposit date:2023-10-12
Release date:2024-07-24
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase.
Nat.Struct.Mol.Biol., 2024
5DHM
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BU of 5dhm by Molmil
Crystal structure of the fimbrial protein Mfa4 from Porphyromonas gingivalis
Descriptor: Immunoreactive 32 kDa antigen
Authors:Kloppsteck, P, Hall, M, Persson, K.
Deposit date:2015-08-31
Release date:2016-04-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the fimbrial protein Mfa4 from Porphyromonas gingivalis in its precursor form: implications for a donor-strand complementation mechanism.
Sci Rep, 6, 2016
5DG5
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BU of 5dg5 by Molmil
CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITH ALTIRATINIB ANALOG DP-4157
Descriptor: Hepatocyte growth factor receptor, N-(2,5-difluoro-4-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}phenyl)-N'-(4-fluorophenyl)cyclopropane-1,1-dicarboxam ide
Authors:Smith, B.D, Kaufman, M.D, Leary, C.B, Turner, B.A, Wise, S.A, Ahn, Y.M, Booth, R.J, Caldwell, T.M, Ensinger, C.L, Hood, M.M, Lu, W.-P, Patt, T.W, Patt, W.C, Rutkoski, T.J, Samarakoon, T, Telikepalli, H, Vogeti, L, Vogeti, S, Yates, K.M, Chun, L, Stewart, L.J, Clare, M, Flynn, D.L.
Deposit date:2015-08-27
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Altiratinib Inhibits Tumor Growth, Invasion, Angiogenesis, and Microenvironment-Mediated Drug Resistance via Balanced Inhibition of MET, TIE2, and VEGFR2.
Mol.Cancer Ther., 14, 2015
3DD5
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BU of 3dd5 by Molmil
Glomerella cingulata E600-cutinase complex
Descriptor: Cutinase, DIETHYL PHOSPHONATE
Authors:Nyon, M.P, Rice, D.W, Berrisford, J.M, Hounslow, A.M, Moir, A.J.G, Huang, H, Nathan, S, Mahadi, N.M, Farah Diba, A.B, Craven, C.J.
Deposit date:2008-06-05
Release date:2008-11-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Catalysis by Glomerella cingulata Cutinase Requires Conformational Cycling between the Active and Inactive States of Its Catalytic Triad
J.Mol.Biol., 385, 2009
3GL9
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BU of 3gl9 by Molmil
The structure of a histidine kinase-response regulator complex sheds light into two-component signaling and reveals a novel cis autophosphorylation mechanism
Descriptor: MAGNESIUM ION, Response regulator, SULFATE ION
Authors:Casino, P, Rubio, V, Marina, A.
Deposit date:2009-03-11
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insight into Partner Specificity and Phosphoryl Transfer in Two-Component Signal Transduction
Cell(Cambridge,Mass.), 139, 2009
3LMJ
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BU of 3lmj by Molmil
Structure of human anti HIV 21c Fab
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Heavy chain of anti HIV Fab from human 21c antibody, Light chain of anti HIV Fab from human 21c antibody
Authors:Diskin, R, Marcovecchio, P.M, Bjorkman, P.J.
Deposit date:2010-01-30
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a clade C HIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity.
Nat.Struct.Mol.Biol., 17, 2010
3DMW
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BU of 3dmw by Molmil
Crystal structure of human type III collagen G982-G1023 containing C-terminal cystine knot
Descriptor: Collagen alpha-1(III) chain
Authors:Boudko, S.P, Engel, J, Okuyama, K, Mizuno, K, Bachinger, H.P, Schumacher, M.A.
Deposit date:2008-07-01
Release date:2008-09-30
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human type III collagen Gly991-Gly1032 cystine knot-containing peptide shows both 7/2 and 10/3 triple helical symmetries.
J.Biol.Chem., 283, 2008
8QT6
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BU of 8qt6 by Molmil
Cryo-EM structure of Streptococcus pneumoniae NADPH oxidase
Descriptor: FAD-binding FR-type domain-containing protein, FLAVIN-ADENINE DINUCLEOTIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dubach, V.R.A, San Segundo-Acosta, P, Murphy, B.J.
Deposit date:2023-10-12
Release date:2024-07-24
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (2.29 Å)
Cite:Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase.
Nat.Struct.Mol.Biol., 2024
3GMD
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BU of 3gmd by Molmil
Structure-based design of 7-Azaindole-pyrrolidines as inhibitors of 11beta-Hydroxysteroid-Dehydrogenase type I
Descriptor: 2-methyl-3-{(3S)-1-[(1-pyridin-2-ylcyclopropyl)carbonyl]pyrrolidin-3-yl}-1H-pyrrolo[2,3-b]pyridine, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Valeur, E, Lepifre, F, Roche, D, Christmann-Franck, S, Hillertz, P, Musil, D.
Deposit date:2009-03-13
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structure-based design of 7-azaindole-pyrrolidine amides as inhibitors of 11 beta-hydroxysteroid dehydrogenase type I.
Bioorg.Med.Chem.Lett., 22, 2012
6UAI
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BU of 6uai by Molmil
Imidazole-triggered RAS-specific subtilisin SUBT_BACAM complexed with YSAM peptide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Toth, E.A, Bryan, P.N, Orban, J.
Deposit date:2019-09-10
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Engineering subtilisin proteases that specifically degrade active RAS.
Commun Biol, 4, 2021
4FXJ
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BU of 4fxj by Molmil
Structure of M2 pyruvate kinase in complex with phenylalanine
Descriptor: PHENYLALANINE, PHOSPHATE ION, Pyruvate kinase isozymes M1/M2
Authors:Walkinshaw, M.D, Morgan, H.P.
Deposit date:2012-07-03
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:M2 pyruvate kinase provides a mechanism for nutrient sensing and regulation of cell proliferation.
Proc.Natl.Acad.Sci.USA, 110, 2013
8QT7
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BU of 8qt7 by Molmil
Cryo-EM structure of Streptococcus pneumoniae NADPH oxidase in complex with NADPH
Descriptor: FAD-binding FR-type domain-containing protein, FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Dubach, V.R.A, San Segundo-Acosta, P, Murphy, B.J.
Deposit date:2023-10-12
Release date:2024-07-24
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase.
Nat.Struct.Mol.Biol., 2024
1QWM
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BU of 1qwm by Molmil
Structure of Helicobacter pylori catalase with formic acid bound
Descriptor: AZIDE ION, FORMIC ACID, KatA catalase, ...
Authors:Loewen, P.C, Carpena, X, Perez-Luque, R, Rovira, C, Haas, R, Odenbreit, S, Nicholls, P, Fita, I.
Deposit date:2003-09-02
Release date:2004-03-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Helicobacter pylori Catalase, with and without Formic Acid Bound, at 1.6 A Resolution
Biochemistry, 43, 2004
6UBI
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BU of 6ubi by Molmil
N123-VRC34.05 HIV neutralizing antibody in complex with HIV fusion peptide residue 512-519
Descriptor: HIV fusion peptide 512-519, VRC34.05 heavy chain, VRC34.05 light chain
Authors:Xu, K, Liu, K, Kwong, P.D.
Deposit date:2019-09-11
Release date:2020-03-18
Last modified:2020-04-22
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage.
Cell Host Microbe, 27, 2020
7UAJ
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BU of 7uaj by Molmil
Crystal structure of apo HPV16 E6
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Protein E6, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Shen, Q, Leonard, P.G, Cross, J.B.
Deposit date:2022-03-13
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Disorder-to-order transition of the interdomain linker of HPV E6 upon E6AP binding reshapes p53 binding pocket
To Be Published
6DQ2
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BU of 6dq2 by Molmil
Cronobacter sakazakii (Enterobacter sakazakii) Metallo-beta-lactamse HARLDQ motif mutant S60
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Monteiro Pedroso, M, Waite, D, Natasa, M, McGeary, R, Guddat, L, Hugenholtz, P, Schenk, G.
Deposit date:2018-06-10
Release date:2019-06-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.158 Å)
Cite:Broad spectrum antibiotic-degrading metallo-beta-lactamases are phylogenetically diverse
Protein Cell, 2020
8BBD
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BU of 8bbd by Molmil
IPNS H270Q variant in complex with ACV after O2 exposure
Descriptor: Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, SULFATE ION
Authors:Rabe, P, Schofield, C.J.
Deposit date:2022-10-12
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:IPNS H270Q variant in complex ACV after O2 exposure
To Be Published
3DDL
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BU of 3ddl by Molmil
Crystallographic Structure of Xanthorhodopsin, a Light-Driven Ion Pump with Dual Chromophore
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, RETINAL, ...
Authors:Stagno, J, Luecke, H, Schobert, B, Lanyi, J.K, Imasheva, E.S, Wang, J.M, Balashov, S.P.
Deposit date:2008-06-05
Release date:2008-10-14
Last modified:2016-06-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore.
Proc.Natl.Acad.Sci.USA, 105, 2008
3PM3
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BU of 3pm3 by Molmil
Bovine trypsin variant X(tripleIle227) in complex with small molecule inhibitor
Descriptor: CALCIUM ION, Cationic trypsin, GLYCEROL, ...
Authors:Tziridis, A, Neumann, P, Kolenko, P, Stubbs, M.T.
Deposit date:2010-11-16
Release date:2011-12-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Correlating structure and ligand affinity in drug discovery: a cautionary tale involving second shell residues.
Biol.Chem., 395, 2014

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PDB entries from 2024-08-21

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