Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 7397 results

6BWY
DownloadVisualize
BU of 6bwy by Molmil
DNA substrate selection by APOBEC3G
Descriptor: DNA (30-MER), PHOSPHATE ION, Protection of telomeres protein 1, ...
Authors:Ziegler, S.J, Buzovetsky, O.
Deposit date:2017-12-15
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies.
PLoS ONE, 13, 2018
3EW1
DownloadVisualize
BU of 3ew1 by Molmil
Crystal structure of rhizavidin
Descriptor: rhizavidin
Authors:Livnah, O, Meir, A.
Deposit date:2008-10-14
Release date:2008-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of rhizavidin: insights into the enigmatic high-affinity interaction of an innate biotin-binding protein dimer.
J.Mol.Biol., 386, 2009
1HZ4
DownloadVisualize
BU of 1hz4 by Molmil
CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR MALT DOMAIN III
Descriptor: BENZOIC ACID, GLYCEROL, MALT REGULATORY PROTEIN, ...
Authors:Steegborn, C, Danot, O, Clausen, T, Huber, R.
Deposit date:2001-01-23
Release date:2001-11-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of transcription factor MalT domain III: a novel helix repeat fold implicated in regulated oligomerization.
Structure, 9, 2001
1M2B
DownloadVisualize
BU of 1m2b by Molmil
Crystal structure at 1.25 Angstroms resolution of the Cys55Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, [2Fe-2S] ferredoxin
Authors:Yeh, A.P, Ambroggio, X.I, Andrade, S.L.A, Einsle, O, Chatelet, C, Meyer, J, Rees, D.C.
Deposit date:2002-06-22
Release date:2002-09-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:High-resolution crystal structures of the wild type and Cys-55-->Ser and Cys-59-->Ser variants of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus
J.Biol.Chem., 277, 2002
1HV6
DownloadVisualize
BU of 1hv6 by Molmil
CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT.
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-D-glucopyranuronic acid, ALGINATE LYASE, SULFATE ION
Authors:Yoon, H.-J, Hashimoto, W, Miyake, O, Murata, K, Mikami, B.
Deposit date:2001-01-08
Release date:2001-05-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution.
J.Mol.Biol., 307, 2001
1N1Q
DownloadVisualize
BU of 1n1q by Molmil
Crystal structure of a Dps protein from Bacillus brevis
Descriptor: DPS Protein, MU-OXO-DIIRON
Authors:Ren, B, Tibbelin, G, Kajino, T, Asami, O, Ladenstein, R.
Deposit date:2002-10-19
Release date:2003-05-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Multi-layered Structure of Dps with a Novel Di-nuclear Ferroxidase Center
J.Mol.Biol., 329, 2003
1HZD
DownloadVisualize
BU of 1hzd by Molmil
CRYSTAL STRUCTURE OF HUMAN AUH PROTEIN, AN RNA-BINDING HOMOLOGUE OF ENOYL-COA HYDRATASE
Descriptor: AU-BINDING PROTEIN/ENOYL-COA HYDRATASE
Authors:Kurimoto, K, Fukai, S, Nureki, O, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-01-24
Release date:2001-12-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase.
Structure, 9, 2001
1HLP
DownloadVisualize
BU of 1hlp by Molmil
STRUCTURAL FEATURES STABILIZING HALOPHILIC MALATE DEHYDROGENASE FROM AN ARCHAEBACTERIUM
Descriptor: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Dym, O, Mevarech, M, Sussman, J.L.
Deposit date:1994-10-04
Release date:1995-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Features That Stabilize Halophilic Malate Dehydrogenase from an Archaebacterium.
Science, 267, 1995
3FA4
DownloadVisualize
BU of 3fa4 by Molmil
Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, triclinic crystal form
Descriptor: 2,3-dimethylmalate lyase, MAGNESIUM ION
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009
1MXF
DownloadVisualize
BU of 1mxf by Molmil
Crystal Structure of Inhibitor Complex of Putative Pteridine Reductase 2 (PTR2) from Trypanosoma cruzi
Descriptor: METHOTREXATE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PTERIDINE REDUCTASE 2
Authors:Schormann, N, Pal, B, Senkovich, O, Carson, M, Howard, A, Smith, C, Delucas, L, Chattopadhyay, D.
Deposit date:2002-10-02
Release date:2003-10-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Trypanosoma cruzi pteridine reductase 2 in complex with a substrate and an inhibitor.
J.Struct.Biol., 152, 2005
1HYM
DownloadVisualize
BU of 1hym by Molmil
HYDROLYZED TRYPSIN INHIBITOR (CMTI-V, MINIMIZED AVERAGE NMR STRUCTURE)
Descriptor: HYDROLYZED CUCURBITA MAXIMA TRYPSIN INHIBITOR V
Authors:Cai, M, Gong, Y, Prakash, O, Krishnamoorthi, R.
Deposit date:1995-06-12
Release date:1995-09-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Reactive-site hydrolyzed Cucurbita maxima trypsin inhibitor-V: function, thermodynamic stability, and NMR solution structure.
Biochemistry, 34, 1995
1MZ6
DownloadVisualize
BU of 1mz6 by Molmil
Trypanosoma rangeli sialidase in complex with the inhibitor DANA
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, sialidase
Authors:Buschiazzo, A, Tavares, G.A, Campetella, O, Spinelli, S, Cremona, M.L, Paris, G, Amaya, M.F, Frasch, A.C.C, Alzari, P.M.
Deposit date:2002-10-05
Release date:2002-10-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of sialyltransferase activity in trypanosomal sialidases
Embo J., 19, 2000
1MWJ
DownloadVisualize
BU of 1mwj by Molmil
Crystal Structure of a MUG-DNA pseudo substrate complex
Descriptor: 5'-D(*CP*GP*CP*GP*A*GP*(DU)P*TP*CP*GP*CP*G)-3', G/U mismatch-specific DNA glycosylase
Authors:Barrett, T.E, Scharer, O, Savva, R, Brown, T, Jiricny, J, Verdine, G.L, Pearl, L.H.
Deposit date:2002-09-30
Release date:2002-10-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure of a thwarted mismatch glycosylase DNA repair complex
Embo J., 18, 1999
1MXG
DownloadVisualize
BU of 1mxg by Molmil
Crystal Structure of a (Ca,Zn)-dependent alpha-amylase from the hyperthermophilic archaeon Pyrococcus woesei in complex with acarbose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Linden, A, Mayans, O, Meyer-Klaucke, W, Antranikian, G, Wilmanns, M.
Deposit date:2002-10-02
Release date:2003-06-10
Last modified:2020-09-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Differential Regulation of a Hyperthermophilic alpha-Amylase with a Novel (Ca,Zn) Two-metal Center by Zinc
J.Biol.Chem., 278, 2003
1MZP
DownloadVisualize
BU of 1mzp by Molmil
Structure of the L1 protuberance in the ribosome
Descriptor: 50s ribosomal protein L1P, MAGNESIUM ION, fragment of 23S rRNA
Authors:Nikulin, A, Eliseikina, I, Tishchenko, S, Nevskaya, N, Davydova, N, Platonova, O, Piendl, W, Selmer, M, Liljas, A, Zimmermann, R, Garber, M, Nikonov, S.
Deposit date:2002-10-09
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of the L1 protuberance in the ribosome.
Nat.Struct.Biol., 10, 2003
6CY6
DownloadVisualize
BU of 6cy6 by Molmil
Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Escherichia coli in complex with tris(hydroxymethyl)aminomethane.
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-04
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
Acta Crystallogr D Struct Biol, 75, 2019
3FK7
DownloadVisualize
BU of 3fk7 by Molmil
Crystal structure of TetR triple mutant (H64K, S135L, S138I) in complex with 4-ddma-atc
Descriptor: (4aS,12aS)-3,10,11,12a-tetrahydroxy-6-methyl-1,12-dioxo-1,4,4a,5,12,12a-hexahydrotetracene-2-carboxamide, MAGNESIUM ION, Tetracycline repressor protein class B from transposon Tn10, ...
Authors:Klieber, M.A, Scholz, O, Lochner, S, Gmeiner, P, Hillen, W, Muller, Y.A.
Deposit date:2008-12-16
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural origins for selectivity and specificity in an engineered bacterial repressor-inducer pair.
Febs J., 276, 2009
6D0P
DownloadVisualize
BU of 6d0p by Molmil
1.88 Angstrom Resolution Crystal Structure of Quercetin 2,3-dioxygenase from Acinetobacter baumannii
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Dubrovska, I, Kiryukhina, O, Endres, M, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-10
Release date:2018-04-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:1.88 Angstrom Resolution Crystal Structure of Quercetin 2,3-dioxygenase from Acinetobacter baumannii
To be Published
1IU3
DownloadVisualize
BU of 1iu3 by Molmil
CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA
Descriptor: 5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3', SeqA protein
Authors:Fujikawa, N, Kurumizaka, H, Nureki, O, Tanaka, Y, Yamazoe, M, Hiraga, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-02-26
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.
Nucleic Acids Res., 32, 2004
1IVO
DownloadVisualize
BU of 1ivo by Molmil
Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal Growth Factor Receptor, ...
Authors:Ogiso, H, Ishitani, R, Nureki, O, Fukai, S, Yamanaka, M, Kim, J.H, Saito, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-28
Release date:2002-10-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.
Cell(Cambridge,Mass.), 110, 2002
3FOV
DownloadVisualize
BU of 3fov by Molmil
Crystal structure of protein RPA0323 of unknown function from Rhodopseudomonas palustris
Descriptor: NITRATE ION, UPF0102 protein RPA0323
Authors:Osipiuk, J, Skarina, T, Kagan, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-01-02
Release date:2009-01-13
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:X-ray crystal structure of protein RPA0323 of unknown function from Rhodopseudomonas palustris.
To be Published
1NHZ
DownloadVisualize
BU of 1nhz by Molmil
Crystal Structure of the Antagonist Form of Glucocorticoid Receptor
Descriptor: 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE, GLUCOCORTICOID RECEPTOR, HEXANE-1,6-DIOL
Authors:Kauppi, B, Jakob, C, Farnegardh, M, Yang, J, Ahola, H, Alarcon, M, Calles, K, Engstrom, O, Harlan, J, Muchmore, S, Ramqvist, A.-K, Thorell, S, Ohman, L, Greer, J, Gustafsson, J.-A, Carlstedt-Duke, J, Carlquist, M.
Deposit date:2002-12-20
Release date:2003-05-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Three-dimensional Structures of Antagonistic and Agonistic Forms of the Glucocorticoid Receptor Ligand-binding Domain: RU-486 INDUCES A TRANSCONFORMATION THAT LEADS TO ACTIVE ANTAGONISM.
J.Biol.Chem., 278, 2003
1NJH
DownloadVisualize
BU of 1njh by Molmil
Crystal Structure of Bacillus subtilis YojF protein
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, protein yojF
Authors:Kim, Y, Korolev, O, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2002-12-31
Release date:2003-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Bacillus subtilis YojF protein
To be Published
6CM2
DownloadVisualize
BU of 6cm2 by Molmil
SAMHD1 HD domain bound to decitabine triphosphate
Descriptor: 6-amino-3-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,4-dihydro-1,3,5-triazin-2(1H)-one, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Oellerich, T, Schneider, C, Thomas, D, Knecht, K.M, Buzovetsky, O, Kaderali, L, Schliemann, C, Bohnenberger, H, Angenendt, L, Hartmann, W, Wardelmann, E, Rothenburger, T, Mohr, S, Scheich, S, Comoglio, F, Wilke, A, Strobel, P, Serve, H, Michaelis, M, Ferreiros, N, Geisslinger, G, Xiong, Y, Keppler, O.T, Cinatl, J.
Deposit date:2018-03-02
Release date:2019-06-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Selective inactivation of hypomethylating agents by SAMHD1 provides a rationale for therapeutic stratification in AML.
Nat Commun, 10, 2019
6CTF
DownloadVisualize
BU of 6ctf by Molmil
Crystal structure of GltPh fast mutant - R276S/M395R
Descriptor: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION
Authors:Boudker, O, Oh, S.
Deposit date:2018-03-23
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.05 Å)
Cite:Kinetic mechanism of coupled binding in sodium-aspartate symporter GltPh.
Elife, 7, 2018

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon