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PDB: 296 results

8CH5
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BU of 8ch5 by Molmil
Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII
Descriptor: Major capsid protein pVIII
Authors:Boehning, J, Bharat, T.A.M.
Deposit date:2023-02-07
Release date:2023-12-20
Last modified:2024-01-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Biophysical basis of filamentous phage tactoid-mediated antibiotic tolerance in P. aeruginosa.
Nat Commun, 14, 2023
3LWB
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BU of 3lwb by Molmil
Crystal Structure of apo D-alanine:D-alanine Ligase (Ddl) from Mycobacterium tuberculosis
Descriptor: D-alanine--D-alanine ligase, NITRATE ION
Authors:Bruning, J.B, Murillo, A.C, Chacon, O, Barletta, R.G, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-02-23
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Mycobacterium tuberculosis D-Alanine:D-Alanine Ligase, a Target of the Antituberculosis Drug D-Cycloserine.
Antimicrob.Agents Chemother., 55, 2011
6VEB
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BU of 6veb by Molmil
Precorrin-2-bound S128A S. typhimurium siroheme synthase
Descriptor: 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13,20,24-hexahydroporphyrin-2,7,1 2,18-tetrayl]tetrapropanoic acid, CHLORIDE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-12-31
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
3OS8
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BU of 3os8 by Molmil
Estrogen Receptor
Descriptor: 4-[1-benzyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OSA
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BU of 3osa by Molmil
Estrogen Receptor
Descriptor: 4-[1-(3-methylbut-2-en-1-yl)-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OS9
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BU of 3os9 by Molmil
Estrogen Receptor
Descriptor: 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3Q0J
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BU of 3q0j by Molmil
Crystal Structure of the Mycobacterium tuberculosis Crotonase in complex with the Inhibitor AcetoacetylCoA
Descriptor: ACETOACETYL-COENZYME A, enoyl-CoA hydratase echA8
Authors:Bruning, J.B, Delgado, E, Ghosh, S, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-12-15
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure and Mechanism of the Prokaryotic Crotonase
To be Published
3Q0G
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BU of 3q0g by Molmil
Crystal Structure of the Mycobacterium tuberculosis Crotonase Bound to a Reaction Intermediate Derived from Crotonyl CoA
Descriptor: Butyryl Coenzyme A, COENZYME A, GLYCEROL, ...
Authors:Bruning, J.B, Delgado, E, Ghosh, S, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-12-15
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal Structure of the Prokaryotic Crotonase
To be Published
3PZK
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BU of 3pzk by Molmil
Crystal Structure of the Mycobacterium tuberculosis crotonase in apo form
Descriptor: SULFATE ION, e enoyl-CoA hydratase echA8
Authors:Bruning, J.B, Delgado, E, Ghosh, S, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-12-14
Release date:2011-03-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2303 Å)
Cite:Crystal Structure of the Prokaryotic Crotonase
To be Published
4ZO1
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BU of 4zo1 by Molmil
Crystal Structure of the T3-bound TR-beta Ligand-binding Domain in complex with RXR-alpha
Descriptor: 3,5,3'TRIIODOTHYRONINE, Nuclear receptor coactivator 2, Retinoic acid receptor RXR-alpha, ...
Authors:Bruning, J.B, Kojetin, D.J, Matta-Camacho, E, Hughes, T.S, Srinivasan, S, Nwachukwu, J.C, Cavett, V, Nowak, J, Chalmers, M.J, Marciano, D.P, Kamenecka, T.M, Rance, M, Shulman, A.I, Mangelsdorf, D.J, Griffin, P.R, Nettles, K.W.
Deposit date:2015-05-05
Release date:2015-09-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.221 Å)
Cite:Structural mechanism for signal transduction in RXR nuclear receptor heterodimers.
Nat Commun, 6, 2015
6P59
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BU of 6p59 by Molmil
Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Core-binding factor subunit beta, Elongin-B, ...
Authors:Binning, J.M, Chesarino, N.M, Emerman, M, Gross, J.D.
Deposit date:2019-05-29
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.942214 Å)
Cite:Structural Basis for a Species-Specific Determinant of an SIV Vif Protein toward Hominid APOBEC3G Antagonism.
Cell Host Microbe, 26, 2019
6CBI
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BU of 6cbi by Molmil
PCNA in complex with inhibitor
Descriptor: GLY-ARG-LYS-ARG-ARG-GLN-DAB-SER-MET-THR-GLU-PHE-TYR-HIS, Proliferating cell nuclear antigen, SULFATE ION
Authors:Bruning, J.B, Wegener, K.L.
Deposit date:2018-02-03
Release date:2018-07-04
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Rational Design of a 310-Helical PIP-Box Mimetic Targeting PCNA, the Human Sliding Clamp.
Chemistry, 24, 2018
5TUP
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BU of 5tup by Molmil
X-ray Crystal Structure of the Aspergillus fumigatus Sliding Clamp
Descriptor: Proliferating cell nuclear antigen
Authors:Bruning, J.B, Marshall, A.C, Kroker, A.J, Wegener, K.L, Rajapaksha, H.
Deposit date:2016-11-06
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Structure of the sliding clamp from the fungal pathogen Aspergillus fumigatus (AfumPCNA) and interactions with Human p21.
FEBS J., 284, 2017
6DDA
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BU of 6dda by Molmil
Nurr1 Covalently Modified by a Dopamine Metabolite
Descriptor: 5-hydroxy-1,2-dihydro-6H-indol-6-one, BROMIDE ION, Nuclear receptor subfamily 4 group A member 2, ...
Authors:Bruning, J.M, Wang, Y, Otrabella, F, Boxue, T, Liu, H, Bhattacharya, P, Guo, S, Holton, J.M, Fletterick, R.J, Jacobson, M.P, England, P.M.
Deposit date:2018-05-09
Release date:2019-03-20
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Covalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite.
Cell Chem Biol, 26, 2019
8AUR
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BU of 8aur by Molmil
Cryo-EM structure of a TasA fibre
Descriptor: Major biofilm matrix component
Authors:Boehning, J, Bharat, T.A.M.
Deposit date:2022-08-25
Release date:2022-11-30
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Donor-strand exchange drives assembly of the TasA scaffold in Bacillus subtilis biofilms.
Nat Commun, 13, 2022
6PR2
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BU of 6pr2 by Molmil
R261A/S128A S. typhimurium siroheme synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-07-10
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
6P5Z
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BU of 6p5z by Molmil
Cobalt-sirohydrochlorin-bound S. typhimurium siroheme synthase
Descriptor: CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, Siroheme synthase, ...
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-05-31
Release date:2021-06-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
5TTO
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BU of 5tto by Molmil
X-ray crystal structure of PPARgamma in complex with SR1643
Descriptor: 4-bromo-N-{3,5-dichloro-4-[(quinolin-3-yl)oxy]phenyl}-2,5-difluorobenzene-1-sulfonamide, Peroxisome proliferator-activated receptor gamma
Authors:Bruning, J.B, Frkic, R.L, Griffin, P, Kamenecka, T, Abell, A.
Deposit date:2016-11-04
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.246 Å)
Cite:Structure-Activity Relationship of 2,4-Dichloro-N-(3,5-dichloro-4-(quinolin-3-yloxy)phenyl)benzenesulfonamide (INT131) Analogs for PPAR gamma-Targeted Antidiabetics.
J. Med. Chem., 60, 2017
7PAB
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BU of 7pab by Molmil
Varicella zoster Orf24-Orf27 nuclear egress complex
Descriptor: Nuclear egress protein 2,Nuclear egress protein 1, SULFATE ION, ZINC ION
Authors:Schweininger, J, Muller, Y.A.
Deposit date:2021-07-29
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of the varicella-zoster Orf24-Orf27 nuclear egress complex spotlights multiple determinants of herpesvirus subfamily specificity.
J.Biol.Chem., 298, 2022
8CIO
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BU of 8cio by Molmil
Cryo-EM structure of the CupE pilus from Pseudomonas aeruginosa
Descriptor: SCPU domain-containing protein
Authors:Boehning, J, Bharat, T.A.M.
Deposit date:2023-02-10
Release date:2023-03-22
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Architecture of the biofilm-associated archaic Chaperone-Usher pilus CupE from Pseudomonas aeruginosa.
Plos Pathog., 19, 2023
6PR4
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BU of 6pr4 by Molmil
D262N/S128A S. typhimurium siroheme synthase
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, Siroheme synthase
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-07-10
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
6P7C
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BU of 6p7c by Molmil
D104A/S128A S. typhimurium siroheme synthase
Descriptor: CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, Siroheme synthase
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-06-05
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
6P7D
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BU of 6p7d by Molmil
D104N S. typhimurium siroheme synthase
Descriptor: CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, Siroheme synthase
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-06-05
Release date:2020-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020
5U5L
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BU of 5u5l by Molmil
X-ray Crystal Structure of the PPARgamma Ligand Binding Domain in Complex with Rivoglitazone
Descriptor: (5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione, Peroxisome proliferator-activated receptor gamma
Authors:Bruning, J.B, Rajapaksha, H, Wegener, K, Bhatia, H.
Deposit date:2016-12-06
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:X-ray crystal structure of rivoglitazone bound to PPAR gamma and PPAR subtype selectivity of TZDs.
Biochim. Biophys. Acta, 1861, 2017
6P5X
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BU of 6p5x by Molmil
Sirohydrochlorin-bound S. typhimurium siroheme synthase
Descriptor: 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Pennington, J.M, Stroupe, M.E.
Deposit date:2019-05-31
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun, 11, 2020

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PDB entries from 2024-07-17

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