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PDB: 35 results

1D28
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CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT: D(CGTGAATTCACG)
Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Authors:Narayana, N, Ginell, S.L, Russu, I.M, Berman, H.M.
Deposit date:1990-12-18
Release date:1992-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal and molecular structure of a DNA fragment: d(CGTGAATTCACG).
Biochemistry, 30, 1991
1FMO
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CRYSTAL STRUCTURE OF A POLYHISTIDINE-TAGGED RECOMBINANT CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH THE PEPTIDE INHIBITOR PKI(5-24) AND ADENOSINE
Descriptor: ADENOSINE, CAMP-DEPENDENT PROTEIN KINASE, HEAT STABLE RABBIT SKELETAL MUSCLE INHIBITOR PROTEIN
Authors:Narayana, N, Cox, S, Shaltiel, S, Taylor, S.S, Xuong, N.-H.
Deposit date:1997-07-08
Release date:1998-01-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a polyhistidine-tagged recombinant catalytic subunit of cAMP-dependent protein kinase complexed with the peptide inhibitor PKI(5-24) and adenosine.
Biochemistry, 36, 1997
1BX6
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CRYSTAL STRUCTURE OF THE POTENT NATURAL PRODUCT INHIBITOR BALANOL IN COMPLEX WITH THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE
Descriptor: BALANOL, CAMP-DEPENDENT PROTEIN KINASE
Authors:Narayana, N, Xuong, N.-H, Ten Eyck, L.F, Taylor, S.S.
Deposit date:1998-10-13
Release date:1999-04-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the potent natural product inhibitor balanol in complex with the catalytic subunit of cAMP-dependent protein kinase.
Biochemistry, 38, 1999
1BKX
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A BINARY COMPLEX OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE AND ADENOSINE FURTHER DEFINES CONFORMATIONAL FLEXIBILITY
Descriptor: ADENOSINE MONOPHOSPHATE, CAMP-DEPENDENT PROTEIN KINASE
Authors:Narayana, N, Cox, S, Xuong, N, Ten Eyck, L.F, Taylor, S.S.
Deposit date:1997-07-01
Release date:1998-03-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A binary complex of the catalytic subunit of cAMP-dependent protein kinase and adenosine further defines conformational flexibility.
Structure, 5, 1997
1JB6
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Crystal Structure of Dimerization Domain (1-33) of HNF-1alpha
Descriptor: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
Authors:Narayana, N, Hua, Q.-X, Weiss, M.A.
Deposit date:2001-06-01
Release date:2001-07-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The dimerization domain of HNF-1alpha: structure and plasticity of an intertwined four-helix bundle with application to diabetes mellitus.
J.Mol.Biol., 310, 2001
2F8W
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Crystal structure of d(CACGTG)2
Descriptor: 1,3-DIAMINOPROPANE, 5'-D(*CP*AP*CP*GP*TP*G)-3', SPERMINE
Authors:Narayana, N, Shamala, N, Ganesh, K.N, Viswamitra, M.A.
Deposit date:2005-12-04
Release date:2006-01-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Interaction between the Z-Type DNA Duplex and 1,3-Propanediamine: Crystal Structure of d(CACGTG)2 at 1.2 A Resolution
Biochemistry, 45, 2006
2GQV
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High-resolution structure of a plasmid-encoded dihydrofolate reductase: pentagonal network of water molecules in the D2-symmetric active site
Descriptor: Dihydrofolate reductase type 2
Authors:Narayana, N.
Deposit date:2006-04-22
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution structure of a plasmid-encoded dihydrofolate reductase: pentagonal network of water molecules in the D(2)-symmetric active site.
Acta Crystallogr.,Sect.D, 62, 2006
1VIF
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STRUCTURE OF DIHYDROFOLATE REDUCTASE
Descriptor: DIHYDROFOLATE REDUCTASE, FOLIC ACID
Authors:Narayana, N, Matthews, D.A, Howell, E.E, Xuong, N.-H.
Deposit date:1996-10-03
Release date:1997-10-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A plasmid-encoded dihydrofolate reductase from trimethoprim-resistant bacteria has a novel D2-symmetric active site.
Nat.Struct.Biol., 2, 1995
1VIE
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STRUCTURE OF DIHYDROFOLATE REDUCTASE
Descriptor: DIHYDROFOLATE REDUCTASE
Authors:Narayana, N, Matthews, D.A, Howell, E.E, Xuong, N.-H.
Deposit date:1996-10-03
Release date:1997-10-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A plasmid-encoded dihydrofolate reductase from trimethoprim-resistant bacteria has a novel D2-symmetric active site.
Nat.Struct.Biol., 2, 1995
2GYP
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Diabetes mellitus due to a frustrated Schellman motif in HNF-1a
Descriptor: Hepatocyte nuclear factor 1-alpha
Authors:Narayana, N, Phillips, N.B, Hua, Q.X, Jia, W, Weiss, M.A.
Deposit date:2006-05-09
Release date:2007-03-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Diabetes mellitus due to misfolding of a beta-cell transcription factor: stereospecific frustration of a Schellman motif in HNF-1alpha.
J.Mol.Biol., 362, 2006
3BSE
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BU of 3bse by Molmil
Crystal structure analysis of a 16-base-pair B-DNA
Descriptor: CALCIUM ION, DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3')
Authors:Narayana, N.
Deposit date:2007-12-23
Release date:2008-12-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Analysis of a Sex-Specific Enhancer Element: Sequence-Dependent DNA Structure, Hydration, and Dynamics
J.Mol.Biol., 385, 2009
7WVL
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Structure of P4A2 Fab in complex with Spike-RBD from SARS-CoV-2
Descriptor: P4A2 Fab Light Chain, P4A2 Fab heavy chain, Spike protein S1
Authors:Narayanan, N, Nair, D.T.
Deposit date:2022-02-10
Release date:2022-12-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:A broadly neutralizing monoclonal antibody overcomes the mutational landscape of emerging SARS-CoV-2 variants of concern.
Plos Pathog., 18, 2022
6K0W
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DNA methyltransferase in complex with sinefungin
Descriptor: Adenine specific DNA methyltransferase (Mod), SINEFUNGIN
Authors:Narayanan, N, Nair, D.T.
Deposit date:2019-05-07
Release date:2019-12-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress.
J.Mol.Biol., 432, 2020
2KZ9
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Structure of E1-69 of Yeast V-ATPase
Descriptor: V-type proton ATPase subunit E
Authors:Sankaranarayanan, N, Gruber, G.
Deposit date:2010-06-14
Release date:2011-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Solution Structure of Subunit E (E1-69) of the Saccharomyces cerevisiae V1VO ATPase
To be Published
2K88
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Association of subunit d (Vma6p) and E (Vma4p) with G (Vma10p) and the NMR solution structure of subunit G (G1-59) of the Saccharomyces cerevisiae V1VO ATPase
Descriptor: Vacuolar proton pump subunit G
Authors:Sankaranarayanan, N, Gayen, S, Thaker, Y, Subramanian, V, Manimekalai, M.S.S, Gruber, G.
Deposit date:2008-09-04
Release date:2009-08-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Assembly of subunit d (Vma6p) and G (Vma10p) and the NMR solution structure of subunit G (G(1-59)) of the Saccharomyces cerevisiae V(1)V(O) ATPase.
Biochim.Biophys.Acta, 1787, 2009
2P4T
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Structure of the Q67H mutant of R67 dihydrofolate reductase-NADP+ complex reveals a novel cofactor binding mode
Descriptor: Dihydrofolate reductase type 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Divya, N, Grifith, E, Narayana, N.
Deposit date:2007-03-13
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure of the Q67H mutant of R67 dihydrofolate reductase-NADP+ complex reveals a novel cofactor binding mode.
Protein Sci., 16, 2007
2WKO
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Structure of metal loaded Pathogenic SOD1 Mutant G93A.
Descriptor: COPPER (II) ION, IODIDE ION, SUPEROXIDE DISMUTASE [CU-ZN], ...
Authors:Antonyuk, S.V, Galaleldeen, A, Strange, R, Whitson, L, Narayana, N, Taylor, A, Schuermann, J.P, Holloway, S.P, Hasnain, S.S, Hart, P.J.
Deposit date:2009-06-16
Release date:2009-11-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Biophysical Properties of Metal-Free Pathogenic Sod1 Mutants A4V and G93A.
Arch.Biochem.Biophys., 492, 2009
1KLS
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NMR Structure of the ZFY-6T[Y10L] Zinc Finger
Descriptor: ZINC FINGER Y-CHROMOSOMAL PROTEIN, ZINC ION
Authors:Lachenmann, M.J, Ladbury, J.E, Phillips, N.B, Narayana, N, Qian, X, Weiss, M.A.
Deposit date:2001-12-12
Release date:2002-03-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The hidden thermodynamics of a zinc finger.
J.Mol.Biol., 316, 2002
1KLR
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NMR Structure of the ZFY-6T[Y10F] Zinc Finger
Descriptor: ZINC FINGER Y-CHROMOSOMAL PROTEIN, ZINC ION
Authors:Lachenmann, M.J, Ladbury, J.E, Phillips, N.B, Narayana, N, Qian, X, Weiss, M.A.
Deposit date:2001-12-12
Release date:2002-03-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The hidden thermodynamics of a zinc finger.
J.Mol.Biol., 316, 2002
1TPU
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S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Stock, A.M, Narayana, N, Xuong, Ng.H, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-11-07
Release date:1995-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the H95N lesion by the secondary S96P mutation in triosephosphate isomerase.
Biochemistry, 35, 1996
1TPV
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S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Stock, A.M, Narayana, N, Xuong, Ng.H, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-11-07
Release date:1995-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the H95N lesion by the secondary S96P mutation in triosephosphate isomerase.
Biochemistry, 35, 1996
1TPW
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TRIOSEPHOSPHATE ISOMERASE DRINKS WATER TO KEEP HEALTHY
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Stock, A.M, Narayana, N, Xuong, Ng.H, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-11-07
Release date:1995-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The role of water in the catalytic efficiency of triosephosphate isomerase.
Biochemistry, 38, 1999
3GZO
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HUMAN SOD1 G93A Variant
Descriptor: COPPER (II) ION, GLYCEROL, MALONATE ION, ...
Authors:Galaleldeen, A, Taylor, A.B, Narayana, N, Whitson, L.J, Hart, P.J.
Deposit date:2009-04-07
Release date:2009-10-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biophysical properties of metal-free pathogenic SOD1 mutants A4V and G93A.
Arch.Biochem.Biophys., 492, 2009
6JQN
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Structure of PaaZ, a bifunctional enzyme in complex with NADP+ and OCoA
Descriptor: Bifunctional protein PaaZ, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, OCTANOYL-COENZYME A
Authors:Gakher, L, Vinothkumar, K.R, Katagihallimath, N, Sowdhamini, R, Sathyanarayanan, N, Cannone, G.
Deposit date:2019-03-31
Release date:2019-09-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.
Nat Commun, 10, 2019
6JQO
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Structure of PaaZ, a bifunctional enzyme in complex with NADP+ and CCoA
Descriptor: Bifunctional protein PaaZ, CROTONYL COENZYME A, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Gakher, L, Vinothkumar, K.R, Katagihallimath, N, Sowdhamini, R, Sathyanarayanan, N, Cannone, G.
Deposit date:2019-03-31
Release date:2019-09-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.
Nat Commun, 10, 2019

 

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