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PDB: 17068 results

6YD9
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BU of 6yd9 by Molmil
Ecoli GyrB24 with inhibitor 16a
Descriptor: 1,2-ETHANEDIOL, DNA gyrase subunit B, N-[6-(3-azanylpropanoylamino)-1,3-benzothiazol-2-yl]-3,4-bis(chloranyl)-5-methyl-1H-pyrrole-2-carboxamide
Authors:Barancokova, M, Skok, Z, Benek, O, Cruz, C.D, Tammela, P, Tomasic, T, Zidar, N, Masic, L.P, Zega, A, Stevenson, C.E.M, Mundy, J, Lawson, D.M, Maxwell, A.M, Kikelj, D, Ilas, J.
Deposit date:2020-03-20
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Exploring the Chemical Space of Benzothiazole-Based DNA Gyrase B Inhibitors.
Acs Med.Chem.Lett., 11, 2020
6YDP
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BU of 6ydp by Molmil
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
Descriptor: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ...
Authors:Kummer, E, Ban, N.
Deposit date:2020-03-20
Release date:2020-07-15
Last modified:2020-08-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.
Embo J., 39, 2020
6Y1W
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BU of 6y1w by Molmil
Xcc4156, a flavin-dependent halogenase from Xanthomonas campestris
Descriptor: (2S,3S)-butane-2,3-diol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, L(+)-TARTARIC ACID, ...
Authors:Widmann, C, Ismail, M, Sewald, N, Niemann, H.H.
Deposit date:2020-02-14
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of apo flavin-dependent halogenase Xcc4156 hints at a reason for cofactor-soaking difficulties.
Acta Crystallogr D Struct Biol, 76, 2020
6Y92
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BU of 6y92 by Molmil
Structure of full-length CD20 in complex with Ofatumumab Fab
Descriptor: B-lymphocyte antigen CD20, CHOLESTEROL HEMISUCCINATE, Ofatumumab Fab heavy chain, ...
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Method:ELECTRON MICROSCOPY (4.73 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
7SPE
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BU of 7spe by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(O2beY)
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPG
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BU of 7spg by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P212121
Descriptor: CHLORIDE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPH
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BU of 7sph by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P21
Descriptor: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPF
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BU of 7spf by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(pCaaF)
Descriptor: Myoglobin, NITRATE ION, OXYGEN MOLECULE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
6Y9N
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BU of 6y9n by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with Myosin 15a C-terminal PDZ binding motif peptide
Descriptor: Unconventional myosin-XV, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
7T1U
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BU of 7t1u by Molmil
Crystal structure of a superbinder Src SH2 domain (sSrcF) in complex with a high affinity phosphopeptide
Descriptor: Proto-oncogene tyrosine-protein kinase Src, Synthetic phosphopeptide, ZINC ION
Authors:Martyn, G.D, Singer, A.U, Manczyk, N, Veggiani, G, Kurinov, I, Sicheri, F, Sidhu, S.S.
Deposit date:2021-12-02
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Engineered SH2 Domains for Targeted Phosphoproteomics.
Acs Chem.Biol., 17, 2022
6Y9O
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BU of 6y9o by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with CASK internal PDZ binding motif peptide
Descriptor: Peripheral plasma membrane protein CASK, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.632 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6YAC
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BU of 6yac by Molmil
Plant PSI-ferredoxin supercomplex
Descriptor: (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Caspy, I, Nelson, N, Shkolnisky, Y, Klaiman, D, Sheinker, A.
Deposit date:2020-03-12
Release date:2020-09-30
Last modified:2020-10-21
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:The structure of a triple complex of plant photosystem I with ferredoxin and plastocyanin.
Nat.Plants, 6, 2020
7SXL
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BU of 7sxl by Molmil
Plasmodium falciparum apicoplast DNA polymerase (exo-minus) without affinity tag
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Nieto, N, Chheda, P, Kerns, R, Nelson, S, Honzatko, R.
Deposit date:2021-11-23
Release date:2022-10-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Promising antimalarials targeting apicoplast DNA polymerase from Plasmodium falciparum.
Eur.J.Med.Chem., 243, 2022
6YDW
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BU of 6ydw by Molmil
55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
Descriptor: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ...
Authors:Kummer, E, Ban, N.
Deposit date:2020-03-21
Release date:2020-07-15
Last modified:2020-08-12
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.
Embo J., 39, 2020
7SOK
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BU of 7sok by Molmil
Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with inhibitor II329
Descriptor: (2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid, DI(HYDROXYETHYL)ETHER, NNMT protein
Authors:Yadav, R, Iyamu, I.D, Huang, R, Noinaj, N.
Deposit date:2021-10-31
Release date:2022-11-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with inhibitor II329
To Be Published
7SNW
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BU of 7snw by Molmil
1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
Descriptor: 2-(methoxycarbonyl)thiophene-3-sulfonic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
To be published
7SNY
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BU of 7sny by Molmil
2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
Descriptor: Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
To be published
7STS
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BU of 7sts by Molmil
Crystal Structure of Human Fab S24-1379 in the Complex with the N-teminal Domain of Nucleocapsid Protein from SARS CoV-2
Descriptor: Fab S24-1379, heavy chain, light chain, ...
Authors:Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-11-15
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies.
Iscience, 27, 2024
7SUE
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BU of 7sue by Molmil
Crystal Structure of Human Fab S24-188 in the complex with the N-teminal Domain of Nucleocapsid protein from SARS CoV-2
Descriptor: Nucleoprotein, S24-188 Fab Heavy chain, S24-188 Fab Light chain
Authors:Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-11-17
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies.
Iscience, 27, 2024
7SNT
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BU of 7snt by Molmil
2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
Descriptor: (4S)-8-benzyl-2-[(furan-2-yl)methyl]-3-methoxy-6-phenylimidazo[1,2-a]pyrazine, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Unch, J, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
To be published
7T32
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BU of 7t32 by Molmil
CryoEM structure of the adenosine 2A receptor-BRIL/Anti BRIL Fab complex with ZM241385
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a/Soluble cytochrome b562 Fusion Protein
Authors:Zhang, K.H, Wu, H, Hoppe, N, Manglik, A, Cheng, Y.F.
Deposit date:2021-12-06
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Fusion protein strategies for cryo-EM study of G protein-coupled receptors.
Nat Commun, 13, 2022
7SS1
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BU of 7ss1 by Molmil
The structure of NTMT1 in complex with compound GD433
Descriptor: (1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl {2-[2-(4-fluoro-3-hydroxyphenyl)-1,3-thiazol-4-yl]propan-2-yl}carbamate, N-terminal Xaa-Pro-Lys N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yadav, R, Guangping, D, Deng, Y, Huang, R, Noinaj, N.
Deposit date:2021-11-09
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of a first-in-class small molecule inhibitor for Protein N-terminal methyltransferases 1/2
To Be Published
7SNR
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BU of 7snr by Molmil
2.00A Resolution Structure of NanoLuc Luciferase
Descriptor: ACETATE ION, CITRATE ANION, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:2.00A Resolution Structure of NanoLuc Luciferase
To be published
6Y9Q
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BU of 6y9q by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with Taperin internal PDZ binding motif peptide
Descriptor: Taperin, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.315 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6YDR
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BU of 6ydr by Molmil
Crystal structure of Mengla Virus VP30 C-terminal domain
Descriptor: GLYCEROL, Minor nucleoprotein VP30, SULFATE ION
Authors:Tomas Gilabert, O, Ferrero, D.S, Verdaguer, N.
Deposit date:2020-03-20
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure of Mengla Virus VP30 C-terminal domain
To Be Published

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數據於2024-08-28公開中

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