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PDB: 120 results

3ZL1
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A thiazolyl-mannoside bound to FimH, monoclinic space group
Descriptor: CHLORIDE ION, N-{5-[(1R)-1-hydroxyethyl]-1,3-thiazol-2-yl}-alpha-D-mannopyranosylamine, PROTEIN FIMH
Authors:Brument, S, Sivignon, A, Dumych, T.I, Moreau, N, Roos, G, Guerardel, Y, Chalopin, T, Deniaud, D, Bilyy, R.O, Darfeuille-Michaud, A, Bouckaert, J, Gouin, S.G.
Deposit date:2013-01-27
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Thiazolylaminomannosides as Potent Antiadhesives of Type 1 Piliated Escherichia Coli Isolated from Crohn'S Disease Patients.
J.Med.Chem., 56, 2013
3ZL2
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A thiazolyl-mannoside bound to FimH, orthorhombic space group
Descriptor: N-{5-[(1R)-1-hydroxyethyl]-1,3-thiazol-2-yl}-alpha-D-mannopyranosylamine, PROTEIN FIMH
Authors:Brument, S, Sivignon, A, Dumych, T.I, Moreau, N, Roos, G, Guerardel, Y, Chalopin, T, Deniaud, D, Bilyy, R.O, Darfeuille-Michaud, A, Bouckaert, J, Gouin, S.G.
Deposit date:2013-01-27
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.251 Å)
Cite:Thiazolylaminomannosides as Potent Antiadhesives of Type 1 Piliated Escherichia Coli Isolated from Crohn'S Disease Patients.
J.Med.Chem., 56, 2013
2VQC
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BU of 2vqc by Molmil
Structure of a DNA binding winged-helix protein, F-112, from Sulfolobus Spindle-shaped Virus 1.
Descriptor: HYPOTHETICAL 13.2 KDA PROTEIN
Authors:Menon, S.K, Kraft, P, Corn, G.J, Wiedenheft, B, Young, M.J, Lawrence, C.M.
Deposit date:2008-03-12
Release date:2008-05-06
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cysteine Usage in Sulfolobus Spindle-Shaped Virus 1 and Extension to Hyperthermophilic Viruses in General.
Virology, 376, 2008
5KBX
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BU of 5kbx by Molmil
Co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer signaling protein Ypd1 and the receiver domain of its downstream response regulator Ssk1
Descriptor: GLYCEROL, Osmolarity two-component system protein SSK1, PHOSPHATE ION, ...
Authors:Menon, S.K, West, A.H.
Deposit date:2016-06-03
Release date:2017-06-07
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Insights revealed by the co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer signaling protein Ypd1 and the receiver domain of its downstream response regulator Ssk1
To Be Published
4K7F
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Newly identified epitope V60 from HBV core protein complexed with HLA-A*0201
Descriptor: Beta-2-microglobulin, Core protein, HLA class I histocompatibility antigen, ...
Authors:Meng, S.D, Zhang, Y, Wu, Y, Qi, J.X.
Deposit date:2013-04-17
Release date:2013-06-05
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:The L60V variation in hepatitis B virus core protein elicits new epitope-specific cytotoxic T lymphocytes and enhances viral replication.
J.Virol., 87, 2013
5L8D
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BU of 5l8d by Molmil
X-ray structure of NikA from Escherichia coli in complex with Ru(bis(pyrzol-1-yl)acetate scorpionate)(CO)2Cl
Descriptor: ACETATE ION, CARBON MONOXIDE, CHLORIDE ION, ...
Authors:Menage, S, Cavazza, C.
Deposit date:2016-06-07
Release date:2017-03-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Efficient conversion of alkenes to chlorohydrins by a Ru-based artificial enzyme.
Chem. Commun. (Camb.), 53, 2017
6M7W
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Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins
Descriptor: Phosphorelay intermediate protein YPD1
Authors:Menon, S.K, Soni, K.S, West, A.H.
Deposit date:2018-08-21
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins.
BMC Biochem., 20, 2019
7KD3
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BU of 7kd3 by Molmil
Structure of an HxlR/DUF24 family transcription regulator, CdTR_3200 from hypervirulent Clostridioides difficile R20291
Descriptor: Putative transcriptional regulator
Authors:Menon, S.K, Isom, C.E, Karr, E.A.
Deposit date:2020-10-07
Release date:2021-09-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an HxlR/DUF24 family transcription regulator, CdTR_3200 from hypervirulent Clostridioides difficile R20291
To Be Published
6T33
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The unusual structure of Ruminococcin C1 antimicrobial peptide confers activity against clinical pathogens
Descriptor: Ruminococcin C
Authors:Chiumento, S, Roblin, C, Bornet, O, Nouailler, M, Muller, C, Basset, C, Kieffer-Jaquinod, S, Coute, Y, Torelli, S, Le Pape, L, Shunemann, V, Jeannot, K, Nicoletti, C, Iranzo, O, Maresca, M, Giardina, T, Fons, M, Devillard, E, Perrier, J, Atta, M, Guerlesquin, F, Lafond, M, Duarte, V.
Deposit date:2019-10-10
Release date:2020-08-12
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties.
Proc.Natl.Acad.Sci.USA, 117, 2020
7SKL
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BU of 7skl by Molmil
Complex between S. aureus aureolysin and IMPI mutant I57I
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, IMPI alpha, ...
Authors:Mendes, S.R, Eckhard, U, Rodriguez-Banqueri, A, Guevara, T, Gomis-Ruth, F.X.
Deposit date:2021-10-21
Release date:2022-01-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An engineered protein-based submicromolar competitive inhibitor of the Staphylococcus aureus virulence factor aureolysin
Comput Struct Biotechnol J, 20, 2022
7SKM
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Complex between S. aureus aureolysin and wt IMPI.
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Mendes, S.R, Eckhard, U, Rodriguez-Banqueri, A, Guevara, T, Gomis-Ruth, F.X.
Deposit date:2021-10-21
Release date:2022-01-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:An engineered protein-based submicromolar competitive inhibitor of the Staphylococcus aureus virulence factor aureolysin
Comput Struct Biotechnol J, 20, 2022
7SKN
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BU of 7skn by Molmil
De novo synthetic protein DIG8-CC (tetragonal space group)
Descriptor: De novo synthetic protein DIG8-CC
Authors:Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
Deposit date:2021-10-21
Release date:2022-10-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
7SKP
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BU of 7skp by Molmil
De novo synthetic protein DIG14 (tetragonal space group)
Descriptor: De novo synthetic protein DIG14
Authors:Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
Deposit date:2021-10-21
Release date:2022-10-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
7SKO
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BU of 7sko by Molmil
De novo synthetic protein DIG8-CC (orthogonal space group)
Descriptor: De novo synthetic protein DIG8-CC, MAGNESIUM ION
Authors:Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
Deposit date:2021-10-21
Release date:2022-10-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
2W8M
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Structure of D212, a nuclease from a fusselovirus.
Descriptor: ORF D212
Authors:Menon, S.K, Young, M.J, Lawrence, C.M.
Deposit date:2009-01-17
Release date:2009-02-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.
J. Virol., 84, 2010
3R0J
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BU of 3r0j by Molmil
Structure of PhoP from Mycobacterium tuberculosis
Descriptor: POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP, R-1,2-PROPANEDIOL, SULFATE ION
Authors:Menon, S, Wang, S.
Deposit date:2011-03-08
Release date:2011-07-13
Last modified:2014-10-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Response Regulator PhoP from Mycobacterium tuberculosis Reveals a Dimer through the Receiver Domain.
Biochemistry, 50, 2011
4UQZ
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BU of 4uqz by Molmil
Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes
Descriptor: ACETATE ION, HSIB1, HSIE1
Authors:Forster, A, Planamente, S, Manoli, E, Lossi, N.S, Freemont, P.S, Filloux, A.
Deposit date:2014-06-25
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Coevolution of the ATPase Clpv, the Sheath Proteins Tssb and Tssc and the Accessory Protein Tagj/Hsie1 Distinguishes Type Vi Secretion Classes.
RNA, 20, 2014
4URH
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BU of 4urh by Molmil
High-resolution structure of partially oxidized D. fructosovorans NiFe-hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C.
Deposit date:2014-06-30
Release date:2014-10-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.
J. Biol. Inorg. Chem., 20, 2015
4UQX
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BU of 4uqx by Molmil
Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, HSIE1
Authors:Forster, A, Planamente, S, Manoli, E, Lossi, N.S, Freemont, P.S, Filloux, A.
Deposit date:2014-06-25
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Coevolution of the ATPase Clpv, the Sheath Proteins Tssb and Tssc and the Accessory Protein Tagj/Hsie1 Distinguishes Type Vi Secretion Classes.
J.Biol.Chem., 289, 2014
4UQW
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Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes
Descriptor: BENZAMIDINE, PROTEIN CLPV1
Authors:Forster, A, Planamente, S, Manoli, E, Lossi, N.S, Freemont, P.S, Filloux, A.
Deposit date:2014-06-25
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Coevolution of the ATPase Clpv, the Sheath Proteins Tssb and Tssc and the Accessory Protein Tagj/Hsie1 Distinguishes Type Vi Secretion Classes.
J.Biol.Chem., 289, 2014
7XC8
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BU of 7xc8 by Molmil
Crystal structure of cotton alpha-like expansin GhEXLA1
Descriptor: Beta-expansin, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Zhao, F, Men, S, Xue, Y, Tu, L.L, Yin, P, Zhang, X.L.
Deposit date:2022-03-23
Release date:2023-05-17
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of cotton alpha-like expansin GhEXLA1
To Be Published
2WBT
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BU of 2wbt by Molmil
The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA
Descriptor: B-129, ZINC ION
Authors:Eilers, B.J, Menon, S, Windham, A.B, Kraft, P, Dlakic, M, Young, M.J, Lawrence, C.M.
Deposit date:2009-03-03
Release date:2010-03-31
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA
To be Published
4UPE
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BU of 4upe by Molmil
Structure of the unready Ni-A state of the S499C mutant of D. fructosovorans NiFe-hydrogenase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, ...
Authors:Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C.
Deposit date:2014-06-16
Release date:2014-10-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.
J. Biol. Inorg. Chem., 20, 2015
4UCW
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Structure of the T18V small subunit mutant of D. fructosovorans NiFe- hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S.
Deposit date:2014-12-04
Release date:2015-02-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Threonine Stabilizes the Nic and Nir Catalytic Intermediates of [Nife]-Hydrogenase.
J.Biol.Chem., 290, 2015
4UCX
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Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S.
Deposit date:2014-12-05
Release date:2015-02-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.
J. Biol. Chem., 290, 2015

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