Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52259 results

3WL4
DownloadVisualize
BU of 3wl4 by Molmil
N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus
Descriptor: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
Deposit date:2013-11-07
Release date:2014-05-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
3QZX
DownloadVisualize
BU of 3qzx by Molmil
3D Structure of ferric methanosarcina acetivorans protoglobin Y61A mutant with unknown ligand
Descriptor: GLYCEROL, Methanosarcina acetivorans protoglobin, PHOSPHATE ION, ...
Authors:Pesce, A, Tilleman, L, Dewilde, S, Ascenzi, P, Coletta, M, Ciaccio, C, Bruno, S, Moens, L, Bolognesi, M, Nardini, M.
Deposit date:2011-03-07
Release date:2011-06-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural heterogeneity and ligand gating in ferric methanosarcina acetivorans protoglobin mutants.
Iubmb Life, 63, 2011
3WKG
DownloadVisualize
BU of 3wkg by Molmil
Crystal structure of cellobiose 2-epimerase in complex with glucosylmannose
Descriptor: CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION, ...
Authors:Fujiwara, T, Saburi, W, Tanaka, I, Yao, M.
Deposit date:2013-10-21
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars
J.Biol.Chem., 289, 2014
3WMP
DownloadVisualize
BU of 3wmp by Molmil
Crystal structure of SLL-2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kita, A, Jimbo, M, Sakai, R, Morimoto, Y, Miki, K.
Deposit date:2013-11-22
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a symbiosis-related lectin from octocoral.
Glycobiology, 25, 2015
3WN1
DownloadVisualize
BU of 3wn1 by Molmil
Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with xylotriose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Fujimoto, Z, Maehara, T, Ichinose, H, Michikawa, M, Harazono, K, Kaneko, S.
Deposit date:2013-11-29
Release date:2014-02-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and characterization of the glycoside hydrolase family 62 alpha-L-arabinofuranosidase from Streptomyces coelicolor
J.Biol.Chem., 289, 2014
3WP3
DownloadVisualize
BU of 3wp3 by Molmil
Xylanase 11C from Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus)
Descriptor: Endo-1,4-beta-xylanase
Authors:Ishikawa, K, Inoue, H, Kataoka, M.
Deposit date:2014-01-09
Release date:2014-11-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus) GH family 11 xylanase
Appl Biochem Biotechnol., 174, 2014
3WVO
DownloadVisualize
BU of 3wvo by Molmil
Crystal structure of Thermobifida fusca Cse1
Descriptor: CRISPR-associated protein, Cse1 family
Authors:Yuan, Y.A, Tay, M.
Deposit date:2014-06-02
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site.
Protein Sci., 24, 2015
3WWP
DownloadVisualize
BU of 3wwp by Molmil
S-selective hydroxynitrile lyase from Baliospermum montanum (apo2)
Descriptor: (S)-hydroxynitrile lyase, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Nakano, S, Dadashipour, M, Asano, Y.
Deposit date:2014-06-23
Release date:2014-10-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics
Biochim.Biophys.Acta, 1844, 2014
3WXP
DownloadVisualize
BU of 3wxp by Molmil
Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with cellobiose
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-08-04
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase mutant (E197A) from Pyrococcus furiosus in complex with cellobiose
To be Published
3WAP
DownloadVisualize
BU of 3wap by Molmil
Crystal structure of Atg13 LIR-fused human LC3C_8-125
Descriptor: Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3C
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
3WAM
DownloadVisualize
BU of 3wam by Molmil
Crystal structure of human LC3C_8-125
Descriptor: CITRIC ACID, Microtubule-associated proteins 1A/1B light chain 3C
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
2OAA
DownloadVisualize
BU of 2oaa by Molmil
Restriction endonuclease MvaI-cognate DNA substrate complex
Descriptor: 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3', CALCIUM ION, ...
Authors:Kaus-Drobek, M, Czapinska, H, Sokolowska, M, Tamulaitis, G, Szczepanowski, R.H, Urbanke, K, Siksnys, V, Bochtler, M.
Deposit date:2006-12-15
Release date:2007-02-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically.
Nucleic Acids Res., 35, 2007
3K4S
DownloadVisualize
BU of 3k4s by Molmil
The structure of the catalytic domain of human PDE4d with 4-(3-Butoxy-4-methoxyphenyl)methyl-2-imidazolidone
Descriptor: (4R)-4-(3-butoxy-4-methoxybenzyl)imidazolidin-2-one, MAGNESIUM ION, ZINC ION, ...
Authors:Crawley, L, Cheng, R.K.Y, Wood, M, Barker, J, Felicetti, B, Whittaker, M.
Deposit date:2009-10-06
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of the catalytic domain of human PDE4d with 4-(3-Butoxy-4-methoxyphenyl)methyl-2-imidazolidone
To be Published
3K6L
DownloadVisualize
BU of 3k6l by Molmil
The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827
Descriptor: (2S,3R)-N~4~-[(1S)-1-(dimethylcarbamoyl)-2,2-dimethylpropyl]-N~1~,2-dihydroxy-3-(2-methylpropyl)butanediamide, NICKEL (II) ION, Peptide deformylase
Authors:Cheng, R.K.Y, Crawley, L, Wood, M, Barker, J, Felicetti, B, Whittaker, M.
Deposit date:2009-10-09
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827
To be Published
4YJT
DownloadVisualize
BU of 4yjt by Molmil
THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000233
Descriptor: GLYCEROL, N~2~-(1,1-dioxido-2,3-dihydro-1,2-benzothiazol-6-yl)-N~4~-ethyl-5-fluoro-N~4~-(1H-indazol-4-yl)pyrimidine-2,4-diamine, Tyrosine-protein kinase SYK
Authors:Somers, D.O, Neu, M, Stuckey, J.
Deposit date:2015-03-03
Release date:2015-09-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Discovery of GSK143, a highly potent, selective and orally efficacious spleen tyrosine kinase inhibitor.
Bioorg. Med. Chem. Lett., 21, 2011
3K7X
DownloadVisualize
BU of 3k7x by Molmil
Crystal structure of the Lin0763 protein from Listeria innocua. Northeast Structural Genomics Consortium Target LkR23.
Descriptor: Lin0763 protein, PHOSPHATE ION
Authors:Vorobiev, S, Su, M, Seetharaman, J, Maglaqui, M, Ciccosanti, C, Buchwald, W.A, Sahdev, S, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-10-13
Release date:2009-10-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:Crystal structure of the Lin0763 protein from Listeria innocua.
To be Published
3ZJG
DownloadVisualize
BU of 3zjg by Molmil
A20 OTU domain with irreversibly oxidised Cys103 from 60 min H2O2 soak.
Descriptor: CHLORIDE ION, TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 3
Authors:Kulathu, Y, Garcia, F.J, Mevissen, T.E.T, Busch, M, Arnaudo, N, Carroll, K.S, Barford, D, Komander, D.
Deposit date:2013-01-17
Release date:2013-03-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Regulation of A20 and Other Otu Deubiquitinases by Reversible Oxidation
Nat.Commun., 4, 2013
1FWX
DownloadVisualize
BU of 1fwx by Molmil
CRYSTAL STRUCTURE OF NITROUS OXIDE REDUCTASE FROM P. DENITRIFICANS
Descriptor: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Brown, K, Djinovic-Carugo, K, Haltia, T, Cabrito, I, Saraste, M, Moura, J.J, Moura, I, Tegoni, M, Cambillau, C.
Deposit date:2000-09-25
Release date:2001-09-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Revisiting the Catalytic CuZ Cluster of Nitrous Oxide (N2O) Reductase. Evidence of a Bridging Inorganic Sulfur
J.Biol.Chem., 275, 2000
3ZVE
DownloadVisualize
BU of 3zve by Molmil
3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 84
Descriptor: 3C PROTEASE, O-tert-butyl-N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-threonyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide
Authors:Tan, J, Perbandt, M, Mesters, J.R, Hilgenfeld, R.
Deposit date:2011-07-24
Release date:2012-08-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:3C Protease of Enterovirus 68: Structure-Based Design of Michael Acceptor Inhibitors and Their Broad-Spectrum Antiviral Effects Against Picornaviruses.
J.Virol., 87, 2013
3JQQ
DownloadVisualize
BU of 3jqq by Molmil
Crystal structure of the H286K mutant of Ferredoxin-NADP+ reductase from Plasmodium falciparum in complex with 2'P-AMP
Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin NADP reductase
Authors:Canevari, G, Milani, M, Bolognesi, M.
Deposit date:2009-09-07
Release date:2010-01-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Plasmodium falciparum ferredoxin-NADP+ reductase His286 plays a dual role in NADP(H) binding and catalysis
Biochemistry, 48, 2009
3ZWX
DownloadVisualize
BU of 3zwx by Molmil
Crystal structure of ADP-ribosyl cyclase complexed with 8-bromo-ADP- ribose
Descriptor: ADP-RIBOSYL CYCLASE, CHLORIDE ION, [(2R,3S,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate
Authors:Kotaka, M, Graeff, R, Zhang, L.H, Lee, H.C, Hao, Q.
Deposit date:2011-08-03
Release date:2012-08-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Studies of Intermediates Along the Cyclization Pathway of Aplysia Adp-Ribosyl Cyclase.
To be Published
3ZY5
DownloadVisualize
BU of 3zy5 by Molmil
Crystal structure of POFUT1 in complex with GDP-fucose (crystal-form-I)
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE, PUTATIVE GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1, ...
Authors:Lira-Navarrete, E, Valero-Gonzalez, J, Villanueva, R, Martinez-Julvez, M, Tejero, T, Merino, P, Panjikar, S, Hurtado-Guerrero, R.
Deposit date:2011-08-17
Release date:2011-09-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Insights Into the Mechanism of Protein O-Fucosylation.
Plos One, 6, 2011
3JTK
DownloadVisualize
BU of 3jtk by Molmil
Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055
Descriptor: (2R)-3-benzyl-2-(2-bromo-4-hydroxy-5-methoxyphenyl)-1,3-thiazolidin-4-one, Glycylpeptide N-tetradecanoyltransferase 1, TETRADECANOYL-COA
Authors:Qiu, W, Hutchinson, A, Wernimont, A, Lin, Y.-H, Kania, A, Ravichandran, M, Kozieradzki, I, Cossar, D, Schapira, M, Arrowsmith, C.H, Bountra, C, Weigelt, J, Edwards, A.M, Wyatt, P.G, Ferguson, M.A.J, Frearson, J.A, Brand, S.Y, Robinson, D.A, Bochkarev, A, Hui, R, Structural Genomics Consortium (SGC)
Deposit date:2009-09-12
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055
To be Published
3ZG3
DownloadVisualize
BU of 3zg3 by Molmil
STEROL 14-ALPHA DEMETHYLASE (CYP51)FROM TRYPANOSOMA CRUZI IN COMPLEX WITH THE PYRIDINE INHIBITOR N-(1-(5-(trifluoromethyl)(pyridin-2-yl)) piperidin-4yl)-N-(4-(trifluoromethyl)phenyl)pyridin-3-amine (EPL- BS967, UDD)
Descriptor: N-[4-(trifluoromethyl)phenyl]-N-[1-[5-(trifluoromethyl)pyridin-2-yl]piperidin-4-yl]pyridin-3-amine, PROTOPORPHYRIN IX CONTAINING FE, STEROL 14-ALPHA DEMETHYLASE
Authors:Hargrove, T.Y, Wawrzak, Z, Keenan, M, Chatelain, E, Lepesheva, G.I.
Deposit date:2012-12-14
Release date:2013-09-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Complexes of Trypanosoma Cruzi Sterol 14Alpha-Demethylase (Cyp51) with Two Pyridine-Based Drug Candidates for Chagas Disease: Structural Basis for Pathogen-Selectivity
J.Biol.Chem., 288, 2013
3ZEZ
DownloadVisualize
BU of 3zez by Molmil
Phage dUTPases control transfer of virulence genes by a proto- oncogenic G protein-like mechanism.(Staphylococcus bacteriophage 80alpha dUTPase with dUPNHPP).
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPASE, MAGNESIUM ION, ...
Authors:Tormo-Mas, M.A, Donderis, J, Garcia-Caballer, M, Alt, A, Mir-Sanchis, I, Marina, A, Penades, J.R.
Deposit date:2012-12-10
Release date:2013-01-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism.
Mol.Cell, 49, 2013

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon