3K6L

The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827

Summary for 3K6L

DescriptorPeptide deformylase, NICKEL (II) ION, (2S,3R)-N~4~-[(1S)-1-(dimethylcarbamoyl)-2,2-dimethylpropyl]-N~1~,2-dihydroxy-3-(2-methylpropyl)butanediamide, ... (4 entities in total)
Functional Keywordsion binding, protein biosynthesis, translation, iron, metal-binding, hydrolase
Biological sourceEscherichia coli K-12
Total number of polymer chains3
Total molecular weight58939.29
Authors
Cheng, R.K.Y.,Crawley, L.,Wood, M.,Barker, J.,Felicetti, B.,Whittaker, M. (deposition date: 2009-10-09, release date: 2009-11-10, Last modification date: 2011-07-13)
Primary citation
Cheng, R.K.Y.,Crawley, L.,Wood, M.,Barker, J.,Felicetti, B.,Whittaker, M.
The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827
To be Published,
Experimental method
X-RAY DIFFRACTION (2.15 Å)
NMR Information
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.30950.2%3.7%14.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3k6l
no rotation
Molmil generated image of 3k6l
rotated about x axis by 90°
Molmil generated image of 3k6l
rotated about y axis by 90°