Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 229 results

6PWY
DownloadVisualize
BU of 6pwy by Molmil
Structure of C. elegans ZK177.8, SAMHD1 ortholog
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Lim, C.S, Maehigashi, T, Wade, L.R, Bowen, N, Knecht, K, Xiong, Y, Kim, B.
Deposit date:2019-07-24
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:ZK177.8 of Caenorhabditis elegans: Aicardi-Goutieres Syndrome SAMHD1 Ortholog
To Be Published
6X1H
DownloadVisualize
BU of 6x1h by Molmil
Crystal structure of a guanine nucleotide exchange factor (GEF) domain from the Orientia tsutsugamushi protein OtDUB
Descriptor: NICKEL (II) ION, ULP_PROTEASE domain-containing protein
Authors:Lim, C.S, Xiong, Y.
Deposit date:2020-05-18
Release date:2020-11-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure of a guanine nucleotide exchange factor encoded by the scrub typhus pathogen Orientia tsutsugamushi .
Proc.Natl.Acad.Sci.USA, 117, 2020
6X1G
DownloadVisualize
BU of 6x1g by Molmil
Crystal structure of a GEF domain from the Orientia tsutsugamushi protein OtDUB in complex with Rac1
Descriptor: MAGNESIUM ION, Ras-related C3 botulinum toxin substrate 1, ULP_PROTEASE domain-containing protein
Authors:Lim, C.S, Xiong, Y.
Deposit date:2020-05-18
Release date:2020-11-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a guanine nucleotide exchange factor encoded by the scrub typhus pathogen Orientia tsutsugamushi .
Proc.Natl.Acad.Sci.USA, 117, 2020
7WVF
DownloadVisualize
BU of 7wvf by Molmil
ectoTLR3-mAb12-poly(I:C) complex
Descriptor: RNA (46-MER), Toll-like receptor 3, mAb12
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-10
Release date:2022-11-16
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
7WVJ
DownloadVisualize
BU of 7wvj by Molmil
NT-mut(K117D,K139D,K145D) TLR3 -poly I:C complex
Descriptor: RNA (46-MER), Toll-like receptor 3
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-10
Release date:2022-11-16
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
7WV5
DownloadVisualize
BU of 7wv5 by Molmil
ectoTLR3-poly(I:C)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RNA (46-MER), ...
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-09
Release date:2022-11-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
7WV4
DownloadVisualize
BU of 7wv4 by Molmil
ectoTLR3-poly(I:C) cluster
Descriptor: RNA (80-MER), Toll-like receptor 3
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-09
Release date:2022-11-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
7WVE
DownloadVisualize
BU of 7wve by Molmil
CT-mut (D523K,D524K,E527K) TLR3-poly(I:C) complex
Descriptor: RNA (46-MER), Toll-like receptor 3
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-10
Release date:2022-11-16
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
7WV3
DownloadVisualize
BU of 7wv3 by Molmil
Toll-like receptor3 linear cluster
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RNA (80-MER), ...
Authors:Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O.
Deposit date:2022-02-09
Release date:2022-11-16
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.26 Å)
Cite:TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.
Nat Commun, 13, 2022
6W6W
DownloadVisualize
BU of 6w6w by Molmil
Cryo-EM structure of CST bound to telomeric single-stranded DNA
Descriptor: CST complex subunit CTC1, CST complex subunit STN1, CST complex subunit TEN1, ...
Authors:Lim, C, Barbour, A.T, Zaug, A.J, Goodrich, K.J, McKay, A.E, Wuttke, D.S, Cech, T.R.
Deposit date:2020-03-17
Release date:2020-06-03
Last modified:2020-06-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The structure of human CST reveals a decameric assembly bound to telomeric DNA.
Science, 368, 2020
6UPU
DownloadVisualize
BU of 6upu by Molmil
Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin
Descriptor: ULP_PROTEASE domain-containing protein, Ubiquitin
Authors:Lim, C.S, Ronau, J.A, Xiong, Y.
Deposit date:2019-10-18
Release date:2020-04-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A deubiquitylase with an unusually high-affinity ubiquitin-binding domain from the scrub typhus pathogen Orientia tsutsugamushi.
Nat Commun, 11, 2020
5VZJ
DownloadVisualize
BU of 5vzj by Molmil
STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA
Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
Authors:Lima, C.D, Wasmuth, E.V.
Deposit date:2017-05-28
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elife, 6, 2017
1D8H
DownloadVisualize
BU of 1d8h by Molmil
X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.
Descriptor: MANGANESE (II) ION, SULFATE ION, mRNA TRIPHOSPHATASE CET1
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
1D8I
DownloadVisualize
BU of 1d8i by Molmil
X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH A SULFATE ION.
Descriptor: MRNA TRIPHOSPHATASE CET1, SULFATE ION
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
2FIT
DownloadVisualize
BU of 2fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
6X5E
DownloadVisualize
BU of 6x5e by Molmil
Crystal structure of a Lewis-binding Fab (ch88.2)
Descriptor: NICKEL (II) ION, ch88.2 Fab heavy chain, ch88.2 Fab light chain
Authors:Soliman, C, Ramsland, P.A.
Deposit date:2020-05-26
Release date:2020-08-26
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Molecular and structural basis for Lewis glycan recognition by a cancer-targeting antibody.
Biochem.J., 477, 2020
1FIT
DownloadVisualize
BU of 1fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
6DG4
DownloadVisualize
BU of 6dg4 by Molmil
Structure of the Chaetomium thermophilum Ulp1-like SUMO protease catalytic domain
Descriptor: GLYCEROL, SULFATE ION, Ulp1-like SUMO protease
Authors:Lima, C.D, Baytshtok, V.
Deposit date:2018-05-16
Release date:2018-07-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.442 Å)
Cite:Discovery and engineering of enhanced SUMO protease enzymes.
J. Biol. Chem., 293, 2018
5E6J
DownloadVisualize
BU of 5e6j by Molmil
Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe
Descriptor: ACETATE ION, NICKEL (II) ION, Polyubiquitin-B, ...
Authors:Lima, C.D, Bekes, M.
Deposit date:2015-10-09
Release date:2016-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease.
Mol. Cell, 62, 2016
6BE4
DownloadVisualize
BU of 6be4 by Molmil
Crystal structure of a polysaccharide-binding human Fab (F598) in complex with nona-N-acetyl-D-glucosamine (9NAc)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab (F598) Heavy Chain, Fab(F598) Light Chain
Authors:Soliman, C, Ramsland, P.A.
Deposit date:2017-10-24
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for antibody targeting of the broadly expressed microbial polysaccharide poly-N-acetylglucosamine.
J. Biol. Chem., 293, 2018
1KMK
DownloadVisualize
BU of 1kmk by Molmil
E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KMJ
DownloadVisualize
BU of 1kmj by Molmil
E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
6FIT
DownloadVisualize
BU of 6fit by Molmil
FHIT-TRANSITION STATE ANALOG
Descriptor: ADENOSINE MONOTUNGSTATE, FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
5FIT
DownloadVisualize
BU of 5fit by Molmil
FHIT-SUBSTRATE ANALOG
Descriptor: FRAGILE HISTIDINE TRIAD PROTEIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
6UG8
DownloadVisualize
BU of 6ug8 by Molmil
Complex of ch28/11 Fab and SSEA-4 (monoclinic form)
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ch28/11 Fab heavy chain, ch28/11 Fab light chain
Authors:Soliman, C, Ramsland, P.A.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The terminal sialic acid of stage-specific embryonic antigen-4 has a crucial role in binding to a cancer-targeting antibody.
J.Biol.Chem., 295, 2020

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon