Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 79 results

1Z1I
DownloadVisualize
BU of 1z1i by Molmil
Crystal structure of native SARS CLpro
Descriptor: 3C-like proteinase
Authors:Liang, P.H, Wang, A.H.
Deposit date:2005-03-04
Release date:2005-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Understanding the maturation process and inhibitor design of SARS-CoV 3CLpro from the crystal structure of C145A in a product-bound form
J.Biol.Chem., 280, 2005
2YPW
DownloadVisualize
BU of 2ypw by Molmil
Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex
Descriptor: TRAO
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-02
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (12.4 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
7SR8
DownloadVisualize
BU of 7sr8 by Molmil
Molecular mechanism of the the wake-promoting agent TAK-925
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Hypocretin receptor type 2, ...
Authors:Yin, J, Chapman, K, Lian, P, De Brabander, J.K, Rosenbaum, D.M.
Deposit date:2021-11-08
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular mechanism of the wake-promoting agent TAK-925.
Nat Commun, 13, 2022
8EIT
DownloadVisualize
BU of 8eit by Molmil
Structure of FFAR1-Gq complex bound to DHA
Descriptor: A modified Guanine nucleotide-binding protein G(q) subunit alpha, DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID, Free fatty acid receptor 1, ...
Authors:Kumari, P, Inoue, A, Chapman, K, Lian, P, Rosenbaum, D.M.
Deposit date:2022-09-15
Release date:2023-05-24
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Molecular mechanism of fatty acid activation of FFAR1.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EJK
DownloadVisualize
BU of 8ejk by Molmil
Structure of FFAR1-Gq complex bound to TAK-875 in a lipid nanodisc
Descriptor: A modified Guanine nucleotide-binding protein G(q) subunit alpha, Free fatty acid receptor 1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Kumari, P, Inoue, A, Chapman, K, Lian, P, Rosenbaum, D.M.
Deposit date:2022-09-17
Release date:2023-05-24
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular mechanism of fatty acid activation of FFAR1.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EJC
DownloadVisualize
BU of 8ejc by Molmil
Structure of FFAR1-Gq complex bound to TAK-875
Descriptor: A modified Guanine nucleotide-binding protein G(q) subunit alpha, Free fatty acid receptor 1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Kumari, P, Inoue, A, Chapman, K, Lian, P, Rosenbaum, D.M.
Deposit date:2022-09-16
Release date:2023-05-24
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular mechanism of fatty acid activation of FFAR1.
Proc.Natl.Acad.Sci.USA, 120, 2023
3ZBJ
DownloadVisualize
BU of 3zbj by Molmil
Fitting results in the I-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Descriptor: TRAO PROTEIN
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-10
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
4AG6
DownloadVisualize
BU of 4ag6 by Molmil
Structure of VirB4 of Thermoanaerobacter pseudethanolicus
Descriptor: SULFATE ION, TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN
Authors:Wallden, K, Williams, R, Yan, J, Lian, P.W, Wang, L, Thalassinos, K, Orlova, E.V, Waksman, G.
Deposit date:2012-01-24
Release date:2012-07-04
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the Virb4 ATPase, Alone and Bound to the Core Complex of a Type Iv Secretion System.
Proc.Natl.Acad.Sci.USA, 109, 2012
4AG5
DownloadVisualize
BU of 4ag5 by Molmil
Structure of VirB4 of Thermoanaerobacter pseudethanolicus
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Wallden, K, Williams, R, Yan, J, Lian, P.W, Wang, L, Thalassinos, K, Orlova, E.V, Waksman, G.
Deposit date:2012-01-24
Release date:2012-07-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of the Virb4 ATPase, Alone and Bound to the Core Complex of a Type Iv Secretion System.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZBI
DownloadVisualize
BU of 3zbi by Molmil
Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Descriptor: TRAF PROTEIN, TRAN PROTEIN, TRAO PROTEIN
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-10
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
1CX9
DownloadVisualize
BU of 1cx9 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF BACTERIAL TRYPTOPHAN SYNTHASE WITH THE TRANSITION STATE ANALOGUE INHIBITOR 4-(2-AMINOPHENYLTHIO)-BUTYLPHOSPHONIC ACID
Descriptor: 4-(2-AMINOPHENYLTHIO)-BUTYLPHOSPHONIC ACID, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Sachpatzidis, A, Dealwis, C, Lubetsky, J.B, Liang, P.H, Anderson, K.S, Lolis, E.
Deposit date:1999-08-29
Release date:1999-12-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic studies of phosphonate-based alpha-reaction transition-state analogues complexed to tryptophan synthase.
Biochemistry, 38, 1999
2DH4
DownloadVisualize
BU of 2dh4 by Molmil
Geranylgeranyl pyrophosphate synthase
Descriptor: MAGNESIUM ION, YPL069C
Authors:Chang, T.-H, Guo, R.-T, Ko, T.-P, Wang, A.H, Liang, P.-H.
Deposit date:2006-03-22
Release date:2006-04-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure of Type-III Geranylgeranyl Pyrophosphate Synthase from Saccharomyces cerevisiae and the Mechanism of Product Chain Length Determination.
J.Biol.Chem., 281, 2006
2DTN
DownloadVisualize
BU of 2dtn by Molmil
Crystal structure of Helicobacter pylori undecaprenyl pyrophosphate synthase complexed with pyrophosphate
Descriptor: DIPHOSPHATE, undecaprenyl pyrophosphate synthase
Authors:Guo, R.T, Kuo, C.J, Chen, C.L, Ko, T.P, Liang, P.H, Wang, A.H.-J.
Deposit date:2006-07-13
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Biochemical characterization, crystal structure, and inhibitors of Helicobacter pylori undecaprenyl pyrophosphate synthase
To be Published
1UEH
DownloadVisualize
BU of 1ueh by Molmil
E. coli undecaprenyl pyrophosphate synthase in complex with Triton X-100, magnesium and sulfate
Descriptor: MAGNESIUM ION, OXTOXYNOL-10, SULFATE ION, ...
Authors:Chang, S.-Y, Ko, T.-P, Liang, P.-H, Wang, A.H.-J.
Deposit date:2003-05-15
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Catalytic mechanism revealed by the crystal structure of undecaprenyl pyrophosphate synthase in complex with sulfate, magnesium, and triton
J.Biol.Chem., 278, 2003
7C8T
DownloadVisualize
BU of 7c8t by Molmil
Complex Structure of SARS-CoV-2 3CL Protease with TG-0205221
Descriptor: 3C-like proteinase, N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-3-CYCLOHEXYL-N-[(1S)-2-HYDROXY-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}ETHYL]-L-ALANINAMIDE
Authors:Lee, C.C, Wang, A.H.J, Kuo, C.J, Liang, P.H.
Deposit date:2020-06-03
Release date:2020-06-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Complex Structures and Cellular Activities of the Potent SARS-CoV-2 3CLpro Inhibitors Guiding Drug Discovery Against COVID-19
To Be Published
7C8R
DownloadVisualize
BU of 7c8r by Molmil
Complex Structure of SARS-CoV-2 3CL Protease with TG-0203770
Descriptor: 3C-like proteinase, ethyl (4R)-4-[[(2S)-4-methyl-2-[[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-(phenylmethoxycarbonylamino)butanoyl]amino]pentanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate
Authors:Lee, C.C, Wang, A.H.J, Kuo, C.J, Liang, P.H.
Deposit date:2020-06-03
Release date:2020-06-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Complex Structures and Cellular Activities of the Potent SARS-CoV-2 3CLpro Inhibitors Guiding Drug Discovery Against COVID-19
To Be Published
4U3A
DownloadVisualize
BU of 4u3a by Molmil
Crystal structure of CtCel5E
Descriptor: Endoglucanase H
Authors:Yuan, S.F, Liang, P.H, Ho, M.C.
Deposit date:2014-07-19
Release date:2015-01-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Biochemical Characterization and Structural Analysis of a Bifunctional Cellulase/Xylanase from Clostridium thermocellum
J.Biol.Chem., 290, 2015
2WSY
DownloadVisualize
BU of 2wsy by Molmil
CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, TRYPTOPHAN SYNTHASE
Authors:Schneider, T.R, Gerhardt, E, Lee, M, Liang, P.-H, Anderson, K.S, Schlichting, I.
Deposit date:1998-02-18
Release date:1999-03-30
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Loop closure and intersubunit communication in tryptophan synthase.
Biochemistry, 37, 1998
8EIZ
DownloadVisualize
BU of 8eiz by Molmil
Cryo-EM structure of squid sensory receptor CRB1
Descriptor: N-benzyl-2-(2,6-dimethylanilino)-N,N-diethyl-2-oxoethan-1-aminium, Squid sensory receptor CRB1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kang, G, Kim, J.J, Allard, C.A.H, Valencia-Montoya, W.A, van Giesen, L, Kilian, P.B, Bai, X, Bellono, N.W, Hibbs, R.E.
Deposit date:2022-09-15
Release date:2023-04-12
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Sensory specializations drive octopus and squid behaviour.
Nature, 616, 2023
1J4N
DownloadVisualize
BU of 1j4n by Molmil
Crystal Structure of the AQP1 water channel
Descriptor: AQUAPORIN 1, nonyl beta-D-glucopyranoside
Authors:Sui, H, Han, B.-G, Lee, J.K, Walian, P, Jap, B.K.
Deposit date:2001-10-19
Release date:2002-03-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of water-specific transport through the AQP1 water channel.
Nature, 414, 2001
3WJO
DownloadVisualize
BU of 3wjo by Molmil
Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli with isopentenyl pyrophosphate (IPP)
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Octaprenyl diphosphate synthase
Authors:Han, X, Chen, C.C, Kuo, C.J, Huang, C.H, Zheng, Y, Ko, T.P, Zhu, Z, Feng, X, Oldfield, E, Liang, P.H, Guo, R.T, Ma, Y.H.
Deposit date:2013-10-12
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structures of ligand-bound octaprenyl pyrophosphate synthase from Escherichia coli reveal the catalytic and chain-length determining mechanisms.
Proteins, 83, 2015
3WJK
DownloadVisualize
BU of 3wjk by Molmil
Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli
Descriptor: Octaprenyl diphosphate synthase
Authors:Han, X, Chen, C.C, Kuo, C.J, Huang, C.H, Zheng, Y, Ko, T.P, Zhu, Z, Feng, X, Oldfield, E, Liang, P.H, Guo, R.T, Ma, Y.H.
Deposit date:2013-10-11
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of ligand-bound octaprenyl pyrophosphate synthase from Escherichia coli reveal the catalytic and chain-length determining mechanisms.
Proteins, 83, 2015
5BYW
DownloadVisualize
BU of 5byw by Molmil
Crystal structure of engineered trifunctional CtCEL5E
Descriptor: Endoglucanase H
Authors:Lin, W.L, Liang, P.H, Ho, M.C.
Deposit date:2015-06-11
Release date:2016-06-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of engineered trifunctional CtCel5E
to be published
3WJN
DownloadVisualize
BU of 3wjn by Molmil
Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli with farnesyl S-thiol-pyrophosphate (FSPP)
Descriptor: Octaprenyl diphosphate synthase, S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE
Authors:Han, X, Chen, C.C, Kuo, C.J, Huang, C.H, Zheng, Y, Ko, T.P, Zhu, Z, Feng, X, Oldfield, E, Liang, P.H, Guo, R.T, Ma, Y.H.
Deposit date:2013-10-12
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of ligand-bound octaprenyl pyrophosphate synthase from Escherichia coli reveal the catalytic and chain-length determining mechanisms.
Proteins, 83, 2015
2AZL
DownloadVisualize
BU of 2azl by Molmil
Crystal structure for the mutant F117E of Thermotoga maritima octaprenyl pyrophosphate synthase
Descriptor: octoprenyl-diphosphate synthase
Authors:Sun, H.Y, Ko, T.P, Kuo, C.J, Guo, R.T, Chou, C.C, Liang, P.H, Wang, A.H.
Deposit date:2005-09-12
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Homodimeric hexaprenyl pyrophosphate synthase from the thermoacidophilic crenarchaeon Sulfolobus solfataricus displays asymmetric subunit structures
J.Bacteriol., 187, 2005

 

1234>

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon