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PDB: 470 件
5XYU
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BU of 5xyu by Molmil
Small subunit of Mycobacterium smegmatis ribosome
分子名称: 16S RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Li, Z, Zhang, Y, Zheng, L, Ge, X, Sanyal, S, Gao, N.
登録日2017-07-10
公開日2017-09-27
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers.
Protein Cell, 9, 2018
5XYM
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BU of 5xym by Molmil
Large subunit of Mycobacterium smegmatis
分子名称: 23S RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Li, Z, Ge, X, Zhang, Y, Zheng, L, Sanyal, S, Gao, N.
登録日2017-07-09
公開日2017-09-27
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers.
Protein Cell, 9, 2018
5ZNL
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BU of 5znl by Molmil
Crystal structure of PDE10A catalytic domain complexed with LHB-6
分子名称: MAGNESIUM ION, N-[2-(7-methoxy-4-morpholin-4-yl-quinazolin-6-yl)oxyethyl]-1,3-benzothiazol-2-amine, ZINC ION, ...
著者Li, Z, Huang, Y, Zhan, C.G, Luo, H.B.
登録日2018-04-09
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Absolute Binding Free Energy Calculation and Design of a Subnanomolar Inhibitor of Phosphodiesterase-10.
J. Med. Chem., 62, 2019
8JSI
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BU of 8jsi by Molmil
Cryo-EM structure of a DNA-protein complex
分子名称: Argonaute family protein, DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ...
著者Li, Z.
登録日2023-06-20
公開日2024-06-26
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structure of a DNA-protein complex
To Be Published
8KEU
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BU of 8keu by Molmil
Crystal Structures of Endo-beta-1,4-xylanase II mutant T2CT28C
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Endo-1,4-beta-xylanase II, IODIDE ION
著者Li, Z.
登録日2023-08-13
公開日2024-08-14
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High resolution crystal structure of xylanase T2CT28C
To Be Published
7C2D
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BU of 7c2d by Molmil
Esterase AlinE4 mutant-S13A
分子名称: ACETATE ION, CADMIUM ION, SGNH-hydrolase family esterase
著者Li, Z, Li, J.
登録日2020-05-07
公開日2020-05-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献C-terminal swapped dimers revealed a new catalytic mechanism of SGNH-hydrolase family esterases
To Be Published
8W9P
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BU of 8w9p by Molmil
Structure of full Banna virus
分子名称: VP10, VP2, VP4, ...
著者Li, Z, Cao, S.
登録日2023-09-05
公開日2024-03-27
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Cryo-EM structures of Banna virus in multiple states reveal stepwise detachment of viral spikes.
Nat Commun, 15, 2024
8W9R
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BU of 8w9r by Molmil
Structure of Banna virus core
分子名称: VP10, VP8, Vp2
著者Li, Z, Cao, S.
登録日2023-09-05
公開日2024-03-27
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Cryo-EM structures of Banna virus in multiple states reveal stepwise detachment of viral spikes.
Nat Commun, 15, 2024
8W9Q
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BU of 8w9q by Molmil
Structure of partial Banna virus
分子名称: VP10, VP2, VP4, ...
著者Li, Z, Cao, S.
登録日2023-09-05
公開日2024-03-27
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Cryo-EM structures of Banna virus in multiple states reveal stepwise detachment of viral spikes.
Nat Commun, 15, 2024
8WCE
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BU of 8wce by Molmil
Cryo-EM structure of a protein-RNA complex
分子名称: MAGNESIUM ION, RNA (31-MER), RNA (66-MER), ...
著者Li, Z.
登録日2023-09-11
公開日2024-05-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Molecular mechanism for target RNA recognition and cleavage of Cas13h.
Nucleic Acids Res., 52, 2024
7DFG
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BU of 7dfg by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
分子名称: 6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydropyrazine-2-carboxamide, MAGNESIUM ION, Non-structural protein 7, ...
著者Li, Z, Zhou, Z, Yu, X.
登録日2020-11-08
公開日2021-11-17
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural basis for repurpose and design of nucleotide drugs for treating COVID-19
To Be Published
7DFH
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BU of 7dfh by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
分子名称: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
著者Li, Z, Zhou, Z, Yu, X.
登録日2020-11-08
公開日2021-11-17
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structural basis for repurpose and design of nucleotide drugs for treating COVID-19
To Be Published
7EJV
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BU of 7ejv by Molmil
The co-crystal structure of DYRK2 with YK-2-69
分子名称: Dual specificity tyrosine-phosphorylation-regulated kinase 2, [6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone
著者Li, Z, Xiao, Y, Yuan, K, Kuang, W, Xiuquan, Y, Yang, P.
登録日2021-04-02
公開日2022-04-06
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Targeting dual-specificity tyrosine phosphorylation-regulated kinase 2 with a highly selective inhibitor for the treatment of prostate cancer.
Nat Commun, 13, 2022
8YEO
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BU of 8yeo by Molmil
Type I-FHNH Cascade-dsDNA R-loop complex
分子名称: 60-nt crRNA, Cas5f, Cas6f, ...
著者Li, Z.
登録日2024-02-22
公開日2024-07-31
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
8YDB
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BU of 8ydb by Molmil
Type I-FHNH Cascade-dsDNA intermediate complex
分子名称: 60-nt crRNA, Cas5f, Cas6f, ...
著者Li, Z.
登録日2024-02-19
公開日2024-07-31
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
8YB6
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BU of 8yb6 by Molmil
Type I-EHNH Cascade complex
分子名称: 61-nt crRNA, CRISPR system Cascade subunit CasC, CRISPR system Cascade subunit CasD, ...
著者Li, Z.
登録日2024-02-11
公開日2024-07-31
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
8YH9
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BU of 8yh9 by Molmil
Type I-FHNH Cascade complex
分子名称: 60-nt crRNA, Cas5f, Cas6f, ...
著者Li, Z.
登録日2024-02-27
公開日2024-07-31
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
8YHA
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BU of 8yha by Molmil
Type I-EHNH Cascade-ssDNA complex
分子名称: 61-nt crRNA, CRISPR system Cascade subunit CasC, CRISPR system Cascade subunit CasD, ...
著者Li, Z.
登録日2024-02-27
公開日2024-07-31
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
7D4F
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BU of 7d4f by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
分子名称: 8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthalene-1,3,5-trisulfonic acid, Non-structural protein 7, Non-structural protein 8, ...
著者Li, Z, Yin, W, Zhou, Z, Yu, X, Xu, H.
登録日2020-09-23
公開日2020-11-11
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Structural basis for inhibition of the SARS-CoV-2 RNA polymerase by suramin.
Nat.Struct.Mol.Biol., 28, 2021
7DOK
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BU of 7dok by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir
分子名称: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
著者Li, Z, Yu, X.
登録日2020-12-14
公開日2021-12-15
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural basis for repurpose and design of nucleotide drugs for treating COVID-19
To Be Published
7DOI
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BU of 7doi by Molmil
Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
分子名称: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
著者Li, Z, Yu, X.
登録日2020-12-14
公開日2021-12-15
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structural basis for repurpose and design of nucleotide drugs for treating COVID-19
To Be Published
7DPO
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BU of 7dpo by Molmil
Crystal Structure of BRD2(BD2)with Ligand ZB-BD-224 bound
分子名称: 5-(1-naphthoyl)-11-methyl-8-((methylsulfonyl)methyl)-4,5-dihydro-2,3a1,5-triazadibenzo[cd,h]azulen-1(2H)-one, Bromodomain-containing protein 2
著者Li, Z, Lu, T, Chen, P, Luo, C, Zhou, B.
登録日2020-12-21
公開日2021-12-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29994035 Å)
主引用文献Structure Base Design of A new chemotype of Four-Cycle Compounds as Bromodomain and Extra-Terminal (BET) Inhibitors with The Second Bromodomain Bias and Highly Anti-inflammatory Potency
To Be Published
7Y5M
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BU of 7y5m by Molmil
The OTU domain of Tacheng Tick Virus 1
分子名称: RNA-directed RNA polymerase
著者Li, Z, Wang, W.J, Xiao, Y.S, Sun, L.T.
登録日2022-06-17
公開日2023-06-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The OTU domain of Tacheng Tick Virus 1
To Be Published
7EFS
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BU of 7efs by Molmil
Fructose-bisphosphate aldolase in Artemisia sieversiana pollen
分子名称: Fructose-bisphosphate aldolase
著者Li, Z, Wei, C, Ji Fu, W, Zhi Qiang, X.
登録日2021-03-23
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Identification of fructose-bisphosphate aldose as a novel type of major allergen from Artemisia pollen
To Be Published
7ETM
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BU of 7etm by Molmil
C6 portal vertex in the enveloped virion capsid
分子名称: Portal protein
著者Li, Z, Yu, X.
登録日2021-05-13
公開日2021-07-14
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (5.9 Å)
主引用文献Structural basis for genome packaging, retention, and ejection in human cytomegalovirus.
Nat Commun, 12, 2021

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