8WCE

Cryo-EM structure of a protein-RNA complex

Summary for 8WCE

• Entry DOI: 10.2210/pdb8wce/pdb
• EMDB information: 37439
• Descriptor: Uncharacterized protein, RNA (66-MER), RNA (31-MER), ... (4 entities in total)
• Functional Keywords: rna, ribonuclease, rna binding protein/rna, rna binding protein-rna complex
• Biological source: unidentified; More
• Total number of polymer chains: 3
• Total formula weight: 162236.61

Authors

Li, Z. (deposition date: 2023-09-11, release date: 2024-05-22, Last modification date: 2024-07-17)

Primary citation

Chen, F.,Zhang, C.,Xue, J.,Wang, F.,Li, Z.
Molecular mechanism for target RNA recognition and cleavage of Cas13h.
Nucleic Acids Res., 52:7279-7291, 2024

PubMed Abstract: RNA-targeting type VI CRISPR-Cas effectors are widely used in RNA applications. Cas13h is a recently identified subtype of Cas13 ribonuclease, with strong RNA cleavage activity and robust in vivo RNA knockdown efficiency. However, little is known regarding its biochemical properties and working mechanisms. Biochemical characterization of Cas13h1 indicated that it lacks in vitro pre-crRNA processing activity and adopts a central seed. The cleavage activity of Cas13h1 is enhanced by a R(G/A) 5'-PFS, and inhibited by tag:anti-tag RNA pairing. We determined the structures of Cas13h1-crRNA binary complex at 3.1 Å and Cas13h1-crRNA-target RNA ternary complex at 3.0 Å. The ternary complex adopts an elongated architecture, and encodes a nucleotide-binding pocket within Helical-2 domain to recognize the guanosine at the 5'-end of the target RNA. Base pairing between crRNA guide and target RNA disrupts Cas13h1-guide interactions, leading to dramatic movement of HEPN domains. Upon target RNA engagement, Cas13h1 adopts a complicated activation mechanism, including separation of HEPN catalytic residues and destabilization of the active site loop and NTD domain, to get activated. Collectively, these insights expand our understanding into Cas13 effectors.

PubMed: 38661236
DOI: 10.1093/nar/gkae324

Experimental method

ELECTRON MICROSCOPY (3.09 Å)