Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 835 results

8YN5
DownloadVisualize
BU of 8yn5 by Molmil
Cryo-EM structure of histamine H3 receptor in complex with histamine and Gi
Descriptor: Antibody fragment scFv16, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8YN4
DownloadVisualize
BU of 8yn4 by Molmil
Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGq
Descriptor: Antibody fragment scFv16, CHOLESTEROL, Engineered guanine nucleotide-binding protein G(q) subunit alpha, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8YN3
DownloadVisualize
BU of 8yn3 by Molmil
Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGs
Descriptor: CHOLESTEROL, Engineered guanine nucleotide,binding protein G(s) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8YNA
DownloadVisualize
BU of 8yna by Molmil
Cryo-EM structure of histamine H4 receptor in complex with immepip and Gi
Descriptor: 4-(1H-imidazol-5-ylmethyl)piperidine, Antibody fragment scFv16, CHOLESTEROL, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8YN6
DownloadVisualize
BU of 8yn6 by Molmil
Cryo-EM structure of histamine H3 receptor in complex with imetit and Gi
Descriptor: 2-(1~{H}-imidazol-5-yl)ethyl carbamimidothioate, Antibody fragment scFv16, CHOLESTEROL, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8YN8
DownloadVisualize
BU of 8yn8 by Molmil
Cryo-EM structure of histamine H3 receptor in complex with proxyfan and miniGo
Descriptor: 5-(3-phenylmethoxypropyl)-1H-imidazole, Antibody fragment scFv16, CHOLESTEROL, ...
Authors:Zhang, X, Liu, G, Li, X, Gong, W.
Deposit date:2024-03-10
Release date:2024-10-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural basis of ligand recognition and activation of the histamine receptor family.
Nat Commun, 15, 2024
8K98
DownloadVisualize
BU of 8k98 by Molmil
Cryo-EM structure of DSR2-TTP
Descriptor: a protein
Authors:Zhang, H, Li, Z, Li, X.Z.
Deposit date:2023-07-31
Release date:2024-05-01
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Insights into the modulation of bacterial NADase activity by phage proteins.
Nat Commun, 15, 2024
5TJC
DownloadVisualize
BU of 5tjc by Molmil
I-II linker of TRPML1 channel at pH 7.5
Descriptor: Mucolipin-1
Authors:Li, M, Zhang, W.K, Benvin, N.M, Zhou, X, Su, D, Li, H, Wang, S, Michailidis, I.E, Tong, L, Li, X, Yang, J.
Deposit date:2016-10-04
Release date:2017-01-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of dual Ca(2+)/pH regulation of the endolysosomal TRPML1 channel.
Nat. Struct. Mol. Biol., 24, 2017
4RFP
DownloadVisualize
BU of 4rfp by Molmil
Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom
Descriptor: Acidic phospholipase A2 5, DI(HYDROXYETHYL)ETHER
Authors:Zeng, F, Niu, L, Li, X, Teng, M.
Deposit date:2014-09-26
Release date:2014-10-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom
To be Published
7Y9O
DownloadVisualize
BU of 7y9o by Molmil
Crystal structure of a CYP109B4 variant from Bacillus sonorensis
Descriptor: CALCIUM ION, Cytochrome P450 monooxygenase YjiB, IMIDAZOLE, ...
Authors:Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-25
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family
Acs Catalysis, 13, 2023
7Y97
DownloadVisualize
BU of 7y97 by Molmil
Crystal structure of CYP109B4 from Bacillus Sonorensis
Descriptor: Cytochrome P450 monooxygenase YjiB, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-24
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family
Acs Catalysis, 13, 2023
7Y98
DownloadVisualize
BU of 7y98 by Molmil
Crystal structure of CYP109B4 from Bacillus Sonorensis in complex with Testosterone
Descriptor: Cytochrome P450 monooxygenase YjiB, PROTOPORPHYRIN IX CONTAINING FE, TESTOSTERONE
Authors:Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-24
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family
Acs Catalysis, 13, 2023
7XIO
DownloadVisualize
BU of 7xio by Molmil
Crystal structure of TYR from Ralstonia
Descriptor: PHOSPHATE ION, Polyphenol oxidase
Authors:Sun, D.Y, Cui, P.P, Liao, L.J, Liu, X.K, Liu, B, Guo, Y, Feng, Z, Zhang, J, Li, X, Zeng, Z.X.
Deposit date:2022-04-13
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of TYR from Ralstonia
To Be Published
7XMW
DownloadVisualize
BU of 7xmw by Molmil
Crystal structure of anti-CRISPR protein AcrVIA2
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, AcrVIA2, SELENIUM ATOM, ...
Authors:Yan, X, Li, X, Song, G.
Deposit date:2022-04-27
Release date:2023-05-31
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of AcrVIA2 and its binding mechanism to CRISPR-Cas13a.
Biochem.Biophys.Res.Commun., 612, 2022
4TVV
DownloadVisualize
BU of 4tvv by Molmil
Crystal structure of LppA from Legionella pneumophila
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Weber, S, Stirnimann, C, Wieser, M, Meier, R, Engelhardt, S, Li, X, Capitani, G, Kammerer, R, Hilbi, H.
Deposit date:2014-06-28
Release date:2014-11-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Type IV Translocated Legionella Cysteine Phytase Counteracts Intracellular Growth Restriction by Phytate.
J.Biol.Chem., 289, 2014
5TJB
DownloadVisualize
BU of 5tjb by Molmil
I-II linker of TRPML1 channel at pH 4.5
Descriptor: Mucolipin-1
Authors:Li, M, Zhang, W.K, Benvin, N.M, Zhou, X, Su, D, Li, H, Wang, S, Michailidis, I.E, Tong, L, Li, X, Yang, J.
Deposit date:2016-10-04
Release date:2017-01-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of dual Ca(2+)/pH regulation of the endolysosomal TRPML1 channel.
Nat. Struct. Mol. Biol., 24, 2017
5ADY
DownloadVisualize
BU of 5ady by Molmil
Cryo-EM structures of the 50S ribosome subunit bound with HflX
Descriptor: 23S RRNA, 50S RIBOSOMAL PROTEIN L1, 50S RIBOSOMAL PROTEIN L10, ...
Authors:Zhang, Y, Mandava, C.S, Cao, W, Li, X, Zhang, D, Li, N, Zhang, Y, Zhang, X, Qin, Y, Mi, K, Lei, J, Sanyal, S, Gao, N.
Deposit date:2015-08-25
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Hflx is a Ribosome Splitting Factor Rescuing Stalled Ribosomes Under Stress Conditions
Nat.Struct.Mol.Biol., 22, 2015
8TZS
DownloadVisualize
BU of 8tzs by Molmil
Structure of human WLS
Descriptor: Protein wntless homolog
Authors:Qi, X, Hu, Q, Li, X.
Deposit date:2023-08-27
Release date:2023-10-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Molecular basis of Wnt biogenesis, secretion, and Wnt7-specific signaling.
Cell, 186, 2023
8TZP
DownloadVisualize
BU of 8tzp by Molmil
Structure of human Wnt7a bound to WLS and RECK
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, PALMITOLEIC ACID, Protein Wnt-7a, ...
Authors:Qi, X, Hu, Q, Li, X.
Deposit date:2023-08-27
Release date:2023-10-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Molecular basis of Wnt biogenesis, secretion, and Wnt7-specific signaling.
Cell, 186, 2023
8CUG
DownloadVisualize
BU of 8cug by Molmil
Synthetic epi-Novo29 (2R,3S), synchrotron structure
Descriptor: ACETATE ION, Synthetic epi-Novo29 (2R,3S)
Authors:Kreutzer, A.G, Li, X, Krumberger, M, Nowick, J.S.
Deposit date:2022-05-17
Release date:2023-01-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.131 Å)
Cite:Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29.
J.Org.Chem., 88, 2023
8JA0
DownloadVisualize
BU of 8ja0 by Molmil
Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex
Descriptor: CRISPR-associated endonuclease Cas9, RNA (117-MER), Uncharacterized protein
Authors:Yin, H, Li, Z, Yu, G.M, Li, X.Z.
Deposit date:2023-05-05
Release date:2023-08-09
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex
To Be Published
2VVZ
DownloadVisualize
BU of 2vvz by Molmil
Structure of the catalytic domain of Streptococcus pneumoniae sialidase NanA
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CHLORIDE ION, SIALIDASE A
Authors:Xu, G, Li, X, Andrew, P.W, Taylor, G.L.
Deposit date:2008-06-13
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Catalytic Domain of Streptococcus Pneumoniae Sialidase Nana.
Acta Crystallogr.,Sect.F, 64, 2008
8K9A
DownloadVisualize
BU of 8k9a by Molmil
Cryo-EM structure of DSR2-DSAD1 state 2
Descriptor: SIR2-like domain-containing protein, SPbeta prophage-derived uncharacterized protein YotI
Authors:Zhang, H, Li, Z, Li, X.Z.
Deposit date:2023-07-31
Release date:2024-05-01
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Insights into the modulation of bacterial NADase activity by phage proteins.
Nat Commun, 15, 2024
6URX
DownloadVisualize
BU of 6urx by Molmil
Crystal structure of ricin A chain in complex with inhibitor 5-phenyl-2-thiophenecarboxylic acid
Descriptor: 1,2-ETHANEDIOL, 5-phenylthiophene-2-carboxylic acid, DIMETHYL SULFOXIDE, ...
Authors:Harijan, R.K, Li, X.P, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L.
Deposit date:2019-10-24
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes.
Acs Infect Dis., 6, 2020
7MLN
DownloadVisualize
BU of 7mln by Molmil
Crystal structure of ricin A chain in complex with 5-(o-tolyl)thiophene-2-carboxylic acid
Descriptor: 5-(2-methylphenyl)thiophene-2-carboxylic acid, GLYCEROL, Ricin
Authors:Harijan, R.K, Li, X.P, Cao, B, Augeri, D, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L.
Deposit date:2021-04-28
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Synthesis and Structural Characterization of Ricin Inhibitors Targeting Ribosome Binding Using Fragment-Based Methods and Structure-Based Design.
J.Med.Chem., 64, 2021

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon