2VVZ

Structure of the catalytic domain of Streptococcus pneumoniae sialidase NanA

Summary for 2VVZ

• Entry DOI: 10.2210/pdb2vvz/pdb
• Descriptor: SIALIDASE A, 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CHLORIDE ION, ... (4 entities in total)
• Functional Keywords: secreted, cell wall, sialidase, hydrolase, peptidoglycan-anchor, glycosidase, neuraminidase, virulence factor
• Biological source: STREPTOCOCCUS PNEUMONIAE
• Total number of polymer chains: 2
• Total formula weight: 113694.63

Authors

Xu, G.,Li, X.,Andrew, P.W.,Taylor, G.L. (deposition date: 2008-06-13, release date: 2008-06-24, Last modification date: 2023-12-13)

Primary citation

Xu, G.,Li, X.,Andrew, P.W.,Taylor, G.L.
Structure of the Catalytic Domain of Streptococcus Pneumoniae Sialidase Nana.
Acta Crystallogr.,Sect.F, 64:772-, 2008

PubMed Abstract: Streptococcus pneumoniae genomes encode three sialidases, NanA, NanB and NanC, which are key virulence factors that remove sialic acids from various glycoconjugates. The enzymes have potential as drug targets and also as vaccine candidates. The 115 kDa NanA is the largest of the three sialidases and is anchored to the bacterial membrane. Although recombinantly expressed full-length NanA was soluble, it failed to crystallize; therefore, a 56.5 kDa domain that retained full enzyme activity was subcloned. The purified enzyme was crystallized in 0.1 M MES pH 6.5, 30%(w/v) PEG 4000 using the sitting-drop vapour-diffusion method. Data were collected at 100 K to 2.5 A resolution from a crystal grown in the presence of the inhibitor 2-deoxy-2,3-dehydro-N-acetyl neuraminic acid. The crystal belongs to space group P2(1)2(1)2(1), with unit-cell parameters a = 49.2, b = 95.6, c = 226.6 A. The structure was solved by molecular replacement and refined to final R and R(free) factors of 0.246 and 0.298, respectively.

PubMed: 18765901
DOI: 10.1107/S1744309108024044

Experimental method

X-RAY DIFFRACTION (2.5 Å)