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PDB: 582 results

7WP8
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Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK1628x in complex with three neutralizing antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2B4 heavy chain, ...
Authors:Zheng, Q, Sun, H, Yuan, Q, Li, S, Xia, N.
Deposit date:2022-01-23
Release date:2023-03-08
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine.
Cell Host Microbe, 30, 2022
7X7U
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BU of 7x7u by Molmil
Cryo-EM structure of SARS-CoV-2 Delta variant spike protein in complex with three nAbs X01, X10 and X17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, X01 heavy chain, ...
Authors:Sun, H, Liu, L, Zhang, T, Zheng, Q, Li, S, Xia, N.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X7V
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BU of 7x7v by Molmil
Cryo-EM structure of SARS-CoV spike protein in complex with three nAbs X01, X10 and X17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, X01 heavy chain, ...
Authors:Sun, H, Liu, L, Zhang, T, Zheng, Q, Li, S, Xia, N.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X7T
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BU of 7x7t by Molmil
Cryo-EM structure of SARS-CoV-2 spike protein in complex with three nAbs X01, X10 and X17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, X01 heavy chain, ...
Authors:Sun, H, Liu, L, Zheng, Q, Li, S, Zhang, T, Xia, N.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XBM
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BU of 7xbm by Molmil
Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Descriptor: CACODYLATE ION, Cytochrome P450 monooxygenase PikC, DI(HYDROXYETHYL)ETHER, ...
Authors:Li, G.B, Pan, Y.J, Li, S.Y, Gao, X.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Nat Commun, 2023
5ZUU
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BU of 5zuu by Molmil
Crystal structure of AtCPSF30 YTH domain in complex with 10mer m6A-modified RNA
Descriptor: 30-kDa cleavage and polyadenylation specificity factor 30, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Wu, B, Nie, H, Li, S, Patel, D.J.
Deposit date:2018-05-08
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis.
Mol Plant, 2021
6J7V
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Structure of HRPV6 VP5 fitted in the cryoEM density of the spike
Descriptor: VP5
Authors:El Omari, K, Li, S, Huiskonen, J.T, Stuart, D.I.
Deposit date:2019-01-18
Release date:2019-03-06
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (16 Å)
Cite:The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.
Nat Commun, 10, 2019
7CFS
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BU of 7cfs by Molmil
Cryo-EM strucutre of human acid-sensing ion channel 1a at pH 8.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, CHOLESTEROL HEMISUCCINATE, ...
Authors:Sun, D.M, Liu, S.L, Li, S.Y, Yang, F, Tian, C.L.
Deposit date:2020-06-28
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.
Elife, 9, 2020
7CFT
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BU of 7cft by Molmil
Cryo-EM strucutre of human acid-sensing ion channel 1a in complex with snake toxin Mambalgin1 at pH 8.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, Mambalgin-1
Authors:Sun, D.M, Liu, S.L, Li, S.Y, Yang, F, Tian, C.L.
Deposit date:2020-06-28
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.
Elife, 9, 2020
6KUG
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BU of 6kug by Molmil
Crystal structure of YBX1 CSD with RNA
Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*GP*CP*CP*U)-3')
Authors:Zou, F, Li, S.
Deposit date:2019-09-02
Release date:2020-02-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:DrosophilaYBX1 homolog YPS promotes ovarian germ line stem cell development by preferentially recognizing 5-methylcytosine RNAs.
Proc.Natl.Acad.Sci.USA, 117, 2020
7WLT
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BU of 7wlt by Molmil
the Curved Structure of mPIEZO1 in Lipid Bilayer
Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine, ...
Authors:Yang, X, Lin, C, Chen, X, Li, S, Li, X, Xiao, B.
Deposit date:2022-01-13
Release date:2022-04-13
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Structure deformation and curvature sensing of PIEZO1 in lipid membranes.
Nature, 604, 2022
3KS4
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BU of 3ks4 by Molmil
Crystal structure of Reston ebolavirus VP35 RNA binding domain
Descriptor: Polymerase cofactor VP35
Authors:Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O.
Deposit date:2009-11-20
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression.
Proc.Natl.Acad.Sci.USA, 107, 2009
3KS8
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BU of 3ks8 by Molmil
Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA
Descriptor: 5'-R(*AP*GP*AP*AP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*A)-3', 5'-R(*UP*CP*CP*UP*CP*CP*CP*UP*CP*CP*CP*UP*CP*CP*UP*UP*CP*U)-3', Polymerase cofactor VP35
Authors:Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O.
Deposit date:2009-11-20
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression.
Proc.Natl.Acad.Sci.USA, 107, 2009
4PED
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BU of 4ped by Molmil
Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthes
Descriptor: Chaperone activity of bc1 complex-like, mitochondrial, SULFATE ION
Authors:Bingman, C.A, Smith, R, Joshi, S, Stefely, J.A, Reidenbach, A.G, Ulbrich, A, Oruganty, O, Floyd, B.J, Jochem, A, Saunders, J.M, Johnson, I.E, Wrobel, R.L, Barber, G.E, Lee, D, Li, S, Kannan, N, Coon, J.J, Pagliarini, D.J, Mitochondrial Protein Partnership (MPP)
Deposit date:2014-04-22
Release date:2014-11-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Mitochondrial ADCK3 Employs an Atypical Protein Kinase-like Fold to Enable Coenzyme Q Biosynthesis.
Mol.Cell, 57, 2015
5I72
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BU of 5i72 by Molmil
Crystal structure of the oligomeric form of the Lassa virus matrix protein Z
Descriptor: RING finger protein Z, ZINC ION
Authors:Hastie, K, Zandonatti, M, Liu, T, Li, S, Woods Jr, V, Saphire, E.O.
Deposit date:2016-02-16
Release date:2016-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Oligomeric Form of Lassa Virus Matrix Protein Z.
J.Virol., 90, 2016
6IY1
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BU of 6iy1 by Molmil
Structure of human Ras-related protein Rab11
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Rab-11A
Authors:Ma, P, Li, S, Li, J.
Deposit date:2018-12-12
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structure of human Ras-related protein Rab11
To Be Published
6KTC
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BU of 6ktc by Molmil
Crystal structure of YBX1 CSD with m5C RNA
Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*GP*(5MC)P*CP*U)-3')
Authors:Zou, F, Li, S.
Deposit date:2019-08-27
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:DrosophilaYBX1 homolog YPS promotes ovarian germ line stem cell development by preferentially recognizing 5-methylcytosine RNAs.
Proc.Natl.Acad.Sci.USA, 117, 2020
4ORB
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BU of 4orb by Molmil
Crystal structure of mouse calcineurin
Descriptor: CALCIUM ION, Calcineurin subunit B type 1, FE (III) ION, ...
Authors:Ma, L, Li, S.J, Wang, J, Wu, J.W, Wang, Z.X.
Deposit date:2014-02-11
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.108 Å)
Cite:Cooperative autoinhibition and multi-level activation mechanisms of calcineurin
To be Published
7WLU
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BU of 7wlu by Molmil
The Flattened Structure of mPIEZO1 in Lipid Bilayer
Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, Piezo-type mechanosensitive ion channel component 1
Authors:Yang, X, Lin, C, Chen, X, Li, S, Li, X, Xiao, B.
Deposit date:2022-01-13
Release date:2022-04-13
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (6.81 Å)
Cite:Structure deformation and curvature sensing of PIEZO1 in lipid membranes.
Nature, 604, 2022
5ZHZ
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BU of 5zhz by Molmil
Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis
Descriptor: Probable endonuclease 4, SULFATE ION, ZINC ION
Authors:Zhang, W, Xu, Y, Yan, M, Li, S, Wang, H, Yang, H, Zhou, W, Rao, Z.
Deposit date:2018-03-13
Release date:2018-04-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis.
Biochem. Biophys. Res. Commun., 498, 2018
5HYZ
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BU of 5hyz by Molmil
Crystal Structure of SCL7 in Oryza sativa
Descriptor: GRAS family transcription factor containing protein, expressed
Authors:Wu, Y, Li, S, Zhao, Y, Sun, L.
Deposit date:2016-02-02
Release date:2016-04-27
Last modified:2016-06-29
Method:X-RAY DIFFRACTION (1.822 Å)
Cite:Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
Plant Cell, 28, 2016
7XBN
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BU of 7xbn by Molmil
Crystal Structure of YC-17-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Descriptor: 4-{[4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-12-ETHYL-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE, Cytochrome P450 monooxygenase PikC, DI(HYDROXYETHYL)ETHER, ...
Authors:Li, G.B, Pan, Y.J, Li, S.Y, Gao, X.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:New mechanistic insight of cytochrome P450 PikC gained from site-specific mutagenesis by non-coding amino acids
Nat Commun, 2023
7XBO
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BU of 7xbo by Molmil
Crystal Structure of 10-dml-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Descriptor: (3R,4S,5S,7R,9E,11R,12R)-12-ETHYL-4-HYDROXY-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE, Cytochrome P450 monooxygenase PikC, DI(HYDROXYETHYL)ETHER, ...
Authors:Li, G.B, Pan, Y.J, Li, S.Y, Gao, X.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:New mechanistic insight of cytochrome P450 PikC gained from site-specific mutagenesis by non-coding amino acids
Nat Commun, 2023
4NSC
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BU of 4nsc by Molmil
Crystal Structure of CBARA1 in the Apo-form
Descriptor: Calcium uptake protein 1, mitochondrial
Authors:Wang, L, Yang, X, Li, S, Shen, Y.
Deposit date:2013-11-28
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and mechanistic insights into MICU1 regulation of mitochondrial calcium uptake.
Embo J., 33, 2014
4NSD
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BU of 4nsd by Molmil
Crystal Structure of CBARA1 in the Ca2+ Binding Form
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Wang, L, Yang, X, Li, S, Shen, Y.
Deposit date:2013-11-28
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mechanistic insights into MICU1 regulation of mitochondrial calcium uptake.
Embo J., 33, 2014

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PDB entries from 2024-05-29

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